Strain Fitness in Sphingobium sp. HT1-2 around GFF3934

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,972,388	+		GFF3933	0.63	+0.0
3,972,388	+		GFF3933	0.63	+0.1
3,972,398	+		GFF3933	0.63	+0.4
3,972,403	+		GFF3933	0.64	-1.7
3,972,403	+		GFF3933	0.64	+0.0
3,972,403	+		GFF3933	0.64	-1.1
3,972,406	-		GFF3933	0.64	-0.7
3,972,411	-		GFF3933	0.64	+0.2
3,972,411	-		GFF3933	0.64	-0.7
3,972,461	+		GFF3933	0.68	-1.7
3,972,473	+		GFF3933	0.69	-0.2
3,972,493	+		GFF3933	0.70	-2.8
3,972,493	+		GFF3933	0.70	-0.8
3,972,501	-		GFF3933	0.70	+0.8
3,972,501	-		GFF3933	0.70	-1.7
3,972,501	-		GFF3933	0.70	+0.3
3,972,502	+		GFF3933	0.71	-1.2
3,972,502	-		GFF3933	0.71	-0.3
3,972,510	-		GFF3933	0.71	+0.1
3,972,558	+		GFF3933	0.74	+0.0
3,972,559	+		GFF3933	0.74	-1.0
3,972,565	-		GFF3933	0.75	+0.7
3,972,566	-		GFF3933	0.75	+0.3
3,972,566	-		GFF3933	0.75	+0.3
3,972,566	-		GFF3933	0.75	+0.4
3,972,572	+		GFF3933	0.75	-0.8
3,972,572	+		GFF3933	0.75	-0.4
3,972,572	+		GFF3933	0.75	-0.9
3,972,572	+		GFF3933	0.75	-1.2
3,972,572	+		GFF3933	0.75	-1.1
3,972,580	-		GFF3933	0.76	+0.2
3,972,580	-		GFF3933	0.76	+0.3
3,972,587	-		GFF3933	0.76	+0.2
3,972,634	+		GFF3933	0.80	+1.2
3,972,634	+		GFF3933	0.80	-0.3
3,972,634	+		GFF3933	0.80	+0.1
3,972,634	+		GFF3933	0.80	-0.2
3,972,634	+		GFF3933	0.80	+0.3
3,972,634	+		GFF3933	0.80	-0.2
3,972,634	+		GFF3933	0.80	+1.9
3,972,637	-		GFF3933	0.80	+1.4
3,972,642	-		GFF3933	0.80	-1.4
3,972,657	-		GFF3933	0.81	-0.8
3,972,657	-		GFF3933	0.81	-1.1
3,972,689	-		GFF3933	0.84	+0.0
3,972,724	+		GFF3933	0.86	+0.2
3,972,734	+		GFF3933	0.87	+1.1
3,972,737	-		GFF3933	0.87	+0.5
3,972,742	-		GFF3933	0.87	-0.2
3,972,742	-		GFF3933	0.87	+0.8
3,972,742	-		GFF3933	0.87	-1.3
3,972,742	-		GFF3933	0.87	-2.9
3,972,747	-		GFF3933	0.88	-0.4
3,972,770	+		GFF3933	0.89	-0.8
3,972,770	+		GFF3933	0.89	-0.4
3,972,772	+		GFF3933	0.89	-1.4
3,972,778	-		GFF3933	0.90	-0.4
3,972,778	-		GFF3933	0.90	+1.2
3,972,778	-		GFF3933	0.90	-0.5
3,972,780	-		GFF3933	0.90	+0.8
3,972,780	-		GFF3933	0.90	-0.2
3,972,784	+				+0.4
3,972,789	+				-0.8
3,972,797	-				-0.8
3,972,810	-				-2.0
3,972,810	-				+0.9
3,972,824	+				-0.0
3,972,835	+				-1.3
3,972,835	+				-0.3
3,972,840	+				-1.7
3,972,853	-				+0.1
3,972,966	+				-0.5
3,972,966	+				+0.6
3,972,992	-				-0.6
3,973,000	+				-0.4
3,973,000	+				-2.6
3,973,012	-				-0.0
3,973,031	+				+0.6
3,973,083	+				-1.6
3,973,083	+				-1.6
3,973,097	-				-0.5
3,973,134	+				-0.4
3,973,148	+				-1.9
3,973,148	+				+0.1
3,973,148	+				-1.1
3,973,152	-				+0.9
3,973,156	-				-1.1
3,973,202	-				-0.8
3,973,202	-				+0.1
3,973,202	-				-0.2
3,973,202	-				-1.8
3,973,202	-				-0.4
3,973,202	-				+0.6
3,973,203	-				+0.2
3,973,290	+				+0.4
3,973,294	+				+0.5
3,973,302	-				-1.2
3,973,309	+				+0.3
3,973,309	+				-1.9
3,973,309	+				-0.3
3,973,311	+				-1.9
3,973,317	-				-1.2
3,973,317	-				-0.6
3,973,317	-				-0.5
3,973,317	-				+0.2
3,973,330	-				-0.9
3,973,332	+				-0.0
3,973,339	-				-1.1
3,973,340	-				-0.3
3,973,340	-				-1.2
3,973,345	+				-0.5
3,973,355	+				-2.1
3,973,384	+				-0.6
3,973,385	+				-0.1
3,973,390	+				+0.3
3,973,390	+				-0.1
3,973,393	-				+0.0
3,973,393	-				-1.3
3,973,398	-				+0.9
3,973,398	-				-0.9
3,973,398	-				-0.6
3,973,407	+				+1.1
3,973,432	-				+1.1
3,973,438	-				-1.4
3,973,462	+				-0.4
3,973,462	+				+1.0
3,973,477	-				-0.9
3,973,481	+				-0.8
3,973,523	-		GFF3934	0.14	-0.4
3,973,523	-		GFF3934	0.14	+1.1
3,973,544	-		GFF3934	0.17	+0.2
3,973,549	-		GFF3934	0.17	+1.2
3,973,551	-		GFF3934	0.17	-0.1
3,973,569	-		GFF3934	0.19	-0.1
3,973,605	+		GFF3934	0.23	-0.6
3,973,623	-		GFF3934	0.25	+0.8
3,973,658	+		GFF3934	0.29	+0.6
3,973,658	+		GFF3934	0.29	-0.0
3,973,680	-		GFF3934	0.31	-2.0
3,973,692	-		GFF3934	0.32	+1.4
3,973,697	+		GFF3934	0.33	+0.2
3,973,699	-		GFF3934	0.33	+1.2
3,973,705	-		GFF3934	0.34	+0.4
3,973,705	-		GFF3934	0.34	-0.5
3,973,705	-		GFF3934	0.34	+0.9
3,973,705	-		GFF3934	0.34	+0.2
3,973,736	+		GFF3934	0.37	-2.2
3,973,738	+		GFF3934	0.37	+0.4
3,973,738	+		GFF3934	0.37	-0.7
3,973,746	+		GFF3934	0.38	-0.9
3,973,746	+		GFF3934	0.38	-0.4
3,973,746	-		GFF3934	0.38	-0.9
3,973,746	-		GFF3934	0.38	-0.5
3,973,746	-		GFF3934	0.38	+1.1
3,973,773	+		GFF3934	0.41	-1.9
3,973,780	+		GFF3934	0.41	-0.8
3,973,788	-		GFF3934	0.42	+1.1
3,973,789	+		GFF3934	0.42	+0.9
3,973,826	-		GFF3934	0.46	+0.5
3,973,826	-		GFF3934	0.46	+0.9
3,973,854	-		GFF3934	0.49	-1.1
3,973,877	+		GFF3934	0.52	+1.2
3,973,909	+		GFF3934	0.55	-1.1
3,973,924	+		GFF3934	0.57	-1.1
3,973,924	+		GFF3934	0.57	+1.1
3,973,924	+		GFF3934	0.57	-1.9
3,973,932	-		GFF3934	0.57	+0.4
3,973,932	-		GFF3934	0.57	+0.1
3,973,932	-		GFF3934	0.57	+1.3
3,973,932	-		GFF3934	0.57	-2.2
3,973,955	-		GFF3934	0.60	-0.7
3,973,993	+		GFF3934	0.64	-0.8
3,973,999	+		GFF3934	0.65	+0.1
3,974,010	+		GFF3934	0.66	-0.9
3,974,010	+		GFF3934	0.66	+0.6
3,974,018	-		GFF3934	0.67	+1.1
3,974,018	-		GFF3934	0.67	+0.0
3,974,018	-		GFF3934	0.67	-0.9
3,974,018	-		GFF3934	0.67	-0.3
3,974,039	+		GFF3934	0.69	+1.0
3,974,051	+		GFF3934	0.70	-0.1
3,974,056	+		GFF3934	0.71	-2.1
3,974,056	+		GFF3934	0.71	-0.6
3,974,056	+		GFF3934	0.71	+0.5
3,974,056	+		GFF3934	0.71	-1.4
3,974,059	-		GFF3934	0.71	-0.2
3,974,059	-		GFF3934	0.71	-0.1
3,974,064	-		GFF3934	0.71	-1.4
3,974,064	-		GFF3934	0.71	-0.6
3,974,064	-		GFF3934	0.71	-0.2
3,974,064	-		GFF3934	0.71	-1.6
3,974,064	-		GFF3934	0.71	-0.9
3,974,101	+		GFF3934	0.75	-1.1
3,974,109	-		GFF3934	0.76	-0.6
3,974,131	-		GFF3934	0.78	-0.8
3,974,140	-		GFF3934	0.79	-1.0
3,974,163	+		GFF3934	0.82	-0.8
3,974,169	-		GFF3934	0.82	+0.1
3,974,171	-		GFF3934	0.83	+0.5
3,974,171	-		GFF3934	0.83	+0.6
3,974,172	-		GFF3934	0.83	-1.3
3,974,207	+		GFF3934	0.86	-2.3
3,974,217	+		GFF3934	0.88	-2.3
3,974,217	+		GFF3934	0.88	+0.2
3,974,217	+		GFF3934	0.88	-1.7
3,974,217	+		GFF3934	0.88	+2.3
3,974,225	-		GFF3934	0.88	-1.6
3,974,225	-		GFF3934	0.88	+1.1
3,974,239	+		GFF3934	0.90	+0.2
3,974,239	+		GFF3934	0.90	+0.6
3,974,258	-				+1.0
3,974,277	+				-1.5
3,974,277	+				-0.5
3,974,277	+				-1.6
3,974,277	+				-0.4
3,974,285	-				-0.2
3,974,285	-				+0.4
3,974,285	-				-1.9
3,974,285	-				+0.5
3,974,285	-				+0.9
3,974,285	-				-0.2
3,974,287	+				-0.8
3,974,306	+				+0.0
3,974,306	+				-0.4
3,974,309	+				-1.0
3,974,313	+				-1.5
3,974,314	-				-0.2
3,974,314	-				-1.9
3,974,314	-				-0.1
3,974,323	+				-1.0
3,974,323	+				-0.8
3,974,331	-				-0.6
3,974,331	-				-0.9
3,974,351	-				-0.7
3,974,354	+				+1.0
3,974,362	-				+0.0
3,974,380	-				-0.2
3,974,416	-				+0.4
3,974,421	-				-1.5
3,974,429	-				+1.4
3,974,954	+				+0.9
3,974,954	+				+0.4
3,974,959	+				-2.1
3,974,959	+				+0.2
3,974,959	+				+0.2
3,974,967	-				+0.3
3,974,967	-				+1.6
3,974,967	-				+0.2
3,974,979	+				-0.4
3,974,989	+				+0.7
3,975,008	-				-1.7
3,975,018	+				-0.5
3,975,035	+				-0.7
3,975,036	-				-0.2
3,975,036	-				-1.5
3,975,107	-		GFF3936	0.17	+0.0
3,975,110	+		GFF3936	0.17	-1.5
3,975,118	-		GFF3936	0.18	+0.9
3,975,118	-		GFF3936	0.18	+2.2
3,975,120	-		GFF3936	0.18	-0.6
3,975,163	-		GFF3936	0.22	+0.6
3,975,163	-		GFF3936	0.22	+0.6
3,975,173	-		GFF3936	0.23	+0.4
3,975,181	-		GFF3936	0.24	+0.4
3,975,198	-		GFF3936	0.26	+0.0
3,975,198	-		GFF3936	0.26	-0.0
3,975,206	+		GFF3936	0.27	-0.2
3,975,213	-		GFF3936	0.27	+0.5
3,975,214	-		GFF3936	0.28	+0.1
3,975,214	-		GFF3936	0.28	+0.2
3,975,216	+		GFF3936	0.28	-2.2
3,975,216	+		GFF3936	0.28	-0.0
3,975,216	+		GFF3936	0.28	+0.8
3,975,224	-		GFF3936	0.29	+0.3
3,975,224	-		GFF3936	0.29	-1.7
3,975,224	-		GFF3936	0.29	+0.4
3,975,224	-		GFF3936	0.29	-1.2
3,975,224	-		GFF3936	0.29	-1.6
3,975,224	-		GFF3936	0.29	-0.4
3,975,224	-		GFF3936	0.29	-0.6
3,975,224	-		GFF3936	0.29	+0.2
3,975,224	-		GFF3936	0.29	+0.2
3,975,224	-		GFF3936	0.29	-0.2
3,975,224	-		GFF3936	0.29	-1.4
3,975,224	-		GFF3936	0.29	-1.4
3,975,224	-		GFF3936	0.29	+1.3
3,975,228	+		GFF3936	0.29	-0.6
3,975,241	-		GFF3936	0.30	-1.7
3,975,248	+		GFF3936	0.31	+0.0
3,975,275	+		GFF3936	0.34	+1.2
3,975,291	-		GFF3936	0.35	-1.2
3,975,299	+		GFF3936	0.36	-0.4
3,975,307	-		GFF3936	0.37	+1.8
3,975,312	-		GFF3936	0.37	-0.5
3,975,330	+		GFF3936	0.39	-1.4