Strain Fitness in Sphingobium sp. HT1-2 around GFF3922

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,959,421	+				-0.5
3,959,434	+				-1.1
3,959,449	+				+0.5
3,959,449	+				-0.8
3,959,457	+				-0.2
3,959,462	+				+0.7
3,959,465	+				+0.3
3,959,465	-				-1.8
3,959,489	-				-0.4
3,959,497	+				-0.7
3,959,512	-				-1.1
3,959,531	-				+0.1
3,959,554	+				+0.2
3,959,570	-				+0.2
3,959,584	+				+0.7
3,959,584	+				-0.2
3,959,593	-				+0.7
3,959,605	-				+0.8
3,959,609	-				-1.5
3,959,610	-				-0.9
3,959,617	-				+0.4
3,959,619	+				-0.2
3,959,630	+				-1.1
3,959,630	+				+1.4
3,959,630	+				-1.8
3,959,675	+		GFF3921	0.11	-1.9
3,959,678	-		GFF3921	0.11	+0.4
3,959,682	+		GFF3921	0.12	-0.6
3,959,682	+		GFF3921	0.12	+1.4
3,959,682	+		GFF3921	0.12	-0.7
3,959,682	+		GFF3921	0.12	-1.7
3,959,682	+		GFF3921	0.12	-2.5
3,959,682	+		GFF3921	0.12	-0.8
3,959,685	-		GFF3921	0.12	-2.1
3,959,690	-		GFF3921	0.13	+0.3
3,959,690	-		GFF3921	0.13	+0.2
3,959,692	+		GFF3921	0.14	+0.1
3,959,722	-		GFF3921	0.18	-0.2
3,959,732	+		GFF3921	0.20	-2.0
3,959,737	+		GFF3921	0.21	-1.5
3,959,740	+		GFF3921	0.21	-0.0
3,959,740	-		GFF3921	0.21	-0.9
3,959,742	+		GFF3921	0.22	+0.4
3,959,742	+		GFF3921	0.22	+0.5
3,959,742	+		GFF3921	0.22	-0.5
3,959,748	-		GFF3921	0.23	+0.2
3,959,750	-		GFF3921	0.23	+0.2
3,959,750	-		GFF3921	0.23	+0.0
3,959,758	-		GFF3921	0.24	+0.7
3,959,759	+		GFF3921	0.25	-0.2
3,959,767	-		GFF3921	0.26	-0.1
3,959,792	+		GFF3921	0.30	-2.1
3,959,792	+		GFF3921	0.30	-1.1
3,959,792	+		GFF3921	0.30	-0.5
3,959,792	+		GFF3921	0.30	-0.1
3,959,795	-		GFF3921	0.31	+0.1
3,959,797	+		GFF3921	0.31	+0.8
3,959,800	-		GFF3921	0.32	+0.9
3,959,800	-		GFF3921	0.32	-0.2
3,959,802	+		GFF3921	0.32	-0.8
3,959,802	+		GFF3921	0.32	+1.1
3,959,802	+		GFF3921	0.32	-0.7
3,959,802	+		GFF3921	0.32	+0.6
3,959,802	+		GFF3921	0.32	-1.3
3,959,802	+		GFF3921	0.32	+0.7
3,959,807	+		GFF3921	0.33	-0.2
3,959,807	+		GFF3921	0.33	-0.7
3,959,807	+		GFF3921	0.33	-0.9
3,959,807	+		GFF3921	0.33	+1.4
3,959,807	+		GFF3921	0.33	-0.1
3,959,807	+		GFF3921	0.33	+0.4
3,959,807	+		GFF3921	0.33	+0.4
3,959,807	+		GFF3921	0.33	+1.2
3,959,807	+		GFF3921	0.33	-0.1
3,959,810	-		GFF3921	0.33	+0.1
3,959,810	-		GFF3921	0.33	-0.7
3,959,810	-		GFF3921	0.33	+2.1
3,959,810	-		GFF3921	0.33	-0.8
3,959,815	-		GFF3921	0.34	-0.2
3,959,815	-		GFF3921	0.34	-0.6
3,959,815	-		GFF3921	0.34	+1.2
3,959,815	-		GFF3921	0.34	+0.6
3,959,815	-		GFF3921	0.34	+0.3
3,959,826	+		GFF3921	0.36	+0.5
3,959,839	-		GFF3921	0.38	+0.5
3,959,839	-		GFF3921	0.38	-0.1
3,959,865	-		GFF3921	0.42	-1.8
3,959,915	-		GFF3921	0.51	+0.4
3,959,961	+		GFF3921	0.58	+0.8
3,959,964	-		GFF3921	0.59	-1.3
3,959,978	+		GFF3921	0.61	-0.8
3,959,986	-		GFF3921	0.62	-1.1
3,959,997	+		GFF3921	0.64	-0.4
3,959,997	-		GFF3921	0.64	+0.1
3,959,997	-		GFF3921	0.64	-0.1
3,960,007	+		GFF3921	0.66	-0.7
3,960,015	-		GFF3921	0.67	-0.5
3,960,041	-		GFF3921	0.72	-2.4
3,960,052	+		GFF3921	0.73	-2.0
3,960,060	+		GFF3921	0.75	-2.2
3,960,075	+		GFF3921	0.77	-0.2
3,960,075	+		GFF3921	0.77	-0.8
3,960,075	+		GFF3921	0.77	-1.1
3,960,080	+		GFF3921	0.78	-0.0
3,960,083	-		GFF3921	0.79	+0.2
3,960,121	-		GFF3921	0.85	-0.1
3,960,124	+		GFF3921	0.85	-0.8
3,960,130	-		GFF3921	0.86	-1.7
3,960,132	-		GFF3921	0.87	-1.6
3,960,132	-		GFF3921	0.87	+0.4
3,960,132	-		GFF3921	0.87	-2.5
3,960,135	-		GFF3921	0.87	-1.1
3,960,171	+				+0.1
3,960,171	+				-0.3
3,960,171	+				-0.5
3,960,171	+				-1.0
3,960,179	-				-0.3
3,960,179	-				-0.7
3,960,182	+				-0.5
3,960,186	+				+0.1
3,960,217	+				+0.2
3,960,217	+				-0.6
3,960,217	+				-1.5
3,960,220	-				-1.2
3,960,222	+				-0.8
3,960,225	-				+1.5
3,960,227	+				+0.8
3,960,227	+				-0.4
3,960,230	-				-0.8
3,960,230	-				-0.2
3,960,230	-				-0.1
3,960,232	+				+1.4
3,960,255	+				-0.8
3,960,263	-				+0.2
3,960,266	+				-1.3
3,960,276	+				-0.1
3,960,286	+				-0.1
3,960,328	-				-0.5
3,960,328	-				-0.8
3,960,328	-				-0.5
3,960,350	+				-0.7
3,960,351	+				-0.7
3,960,358	-				+1.1
3,960,371	+				-0.6
3,960,371	+				+0.0
3,960,379	+				-1.2
3,960,379	-				-0.8
3,960,379	-				-0.3
3,960,381	+				-0.5
3,960,386	+				-0.7
3,960,386	+				-0.7
3,960,394	-				-1.1
3,960,394	-				+0.8
3,960,402	-				+0.4
3,960,456	-				-0.2
3,960,456	-				-0.5
3,960,458	+				+0.4
3,960,461	-				+0.8
3,960,461	-				-0.8
3,960,484	+				-1.1
3,960,484	+				+0.1
3,960,486	+				-1.4
3,960,489	+				-1.0
3,960,489	+				-0.3
3,960,492	-				+1.4
3,960,494	-				-0.1
3,960,502	-				-0.6
3,960,522	+				-0.1
3,960,523	+				+0.7
3,960,523	+				+0.5
3,960,523	+				-0.9
3,960,525	-				+0.5
3,960,531	+				-0.3
3,960,531	-				-0.1
3,960,562	-				-0.6
3,960,571	+		GFF3922	0.10	+0.4
3,960,571	+		GFF3922	0.10	-0.4
3,960,579	-		GFF3922	0.11	+1.5
3,960,580	+		GFF3922	0.11	+0.6
3,960,580	+		GFF3922	0.11	-2.3
3,960,582	+		GFF3922	0.11	+0.0
3,960,582	+		GFF3922	0.11	-1.1
3,960,582	+		GFF3922	0.11	-0.8
3,960,590	-		GFF3922	0.12	+1.0
3,960,599	+		GFF3922	0.12	-1.7
3,960,613	+		GFF3922	0.13	-1.6
3,960,613	+		GFF3922	0.13	-1.5
3,960,621	-		GFF3922	0.13	+0.5
3,960,621	-		GFF3922	0.13	-0.5
3,960,626	+		GFF3922	0.14	-0.0
3,960,631	+		GFF3922	0.14	+0.6
3,960,631	+		GFF3922	0.14	-0.5
3,960,639	-		GFF3922	0.14	-1.5
3,960,656	-		GFF3922	0.16	+0.3
3,960,671	+		GFF3922	0.16	+0.3
3,960,679	-		GFF3922	0.17	+0.2
3,960,679	-		GFF3922	0.17	-0.8
3,960,714	+		GFF3922	0.19	+0.7
3,960,738	-		GFF3922	0.20	+0.4
3,960,749	+		GFF3922	0.21	-0.1
3,960,753	+		GFF3922	0.21	-0.7
3,960,757	-		GFF3922	0.22	-1.7
3,960,757	-		GFF3922	0.22	-2.2
3,960,763	+		GFF3922	0.22	+0.4
3,960,769	-		GFF3922	0.22	-0.2
3,960,831	+		GFF3922	0.26	+0.2
3,960,841	+		GFF3922	0.27	-0.3
3,960,844	-		GFF3922	0.27	+0.8
3,960,844	-		GFF3922	0.27	+0.4
3,960,849	-		GFF3922	0.27	-0.5
3,960,849	-		GFF3922	0.27	+0.2
3,960,855	+		GFF3922	0.27	+0.4
3,960,855	-		GFF3922	0.27	-1.4
3,960,859	+		GFF3922	0.28	+1.1
3,960,860	+		GFF3922	0.28	+0.4
3,960,863	-		GFF3922	0.28	-1.9
3,960,868	-		GFF3922	0.28	+0.4
3,960,870	+		GFF3922	0.28	-1.4
3,960,874	+		GFF3922	0.28	-1.5
3,960,878	-		GFF3922	0.29	-0.3
3,960,882	-		GFF3922	0.29	-0.2
3,960,886	+		GFF3922	0.29	+0.5
3,960,889	-		GFF3922	0.29	-1.3
3,960,893	+		GFF3922	0.30	+0.1
3,960,893	+		GFF3922	0.30	+0.4
3,960,893	+		GFF3922	0.30	+0.2
3,960,894	+		GFF3922	0.30	-1.3
3,960,894	+		GFF3922	0.30	-1.3
3,960,894	+		GFF3922	0.30	+0.4
3,960,894	+		GFF3922	0.30	+0.7
3,960,894	+		GFF3922	0.30	+0.2
3,960,895	-		GFF3922	0.30	-0.3
3,960,902	-		GFF3922	0.30	-0.8
3,960,902	-		GFF3922	0.30	-0.8
3,960,902	-		GFF3922	0.30	-0.3
3,960,902	-		GFF3922	0.30	+0.7
3,960,910	+		GFF3922	0.31	-1.5
3,960,915	-		GFF3922	0.31	-1.7
3,960,923	-		GFF3922	0.31	-2.2
3,960,933	+		GFF3922	0.32	-1.2
3,960,933	+		GFF3922	0.32	+0.5
3,960,937	+		GFF3922	0.32	+0.2
3,960,972	+		GFF3922	0.34	-1.2
3,960,988	+		GFF3922	0.35	-0.1
3,960,988	+		GFF3922	0.35	-1.3
3,960,988	+		GFF3922	0.35	+0.2
3,960,988	+		GFF3922	0.35	-1.0
3,960,988	+		GFF3922	0.35	-1.7
3,960,995	+		GFF3922	0.36	-0.1
3,960,996	-		GFF3922	0.36	-0.2
3,960,996	-		GFF3922	0.36	-0.3
3,961,014	-		GFF3922	0.37	-0.6
3,961,023	+		GFF3922	0.37	-0.2
3,961,075	+		GFF3922	0.40	+1.0
3,961,126	+		GFF3922	0.43	+0.7
3,961,131	+		GFF3922	0.44	+0.8
3,961,141	+		GFF3922	0.44	-0.0
3,961,159	+		GFF3922	0.45	-1.5
3,961,167	-		GFF3922	0.46	+0.4
3,961,168	-		GFF3922	0.46	-0.1
3,961,168	-		GFF3922	0.46	-0.6
3,961,168	-		GFF3922	0.46	-1.7
3,961,168	-		GFF3922	0.46	+0.1
3,961,193	+		GFF3922	0.47	-1.2
3,961,202	+		GFF3922	0.48	-2.0
3,961,220	-		GFF3922	0.49	-1.5
3,961,222	+		GFF3922	0.49	+1.8
3,961,230	-		GFF3922	0.50	+0.2
3,961,255	+		GFF3922	0.51	+1.1
3,961,270	+		GFF3922	0.52	-0.2
3,961,293	+		GFF3922	0.53	+1.4
3,961,316	-		GFF3922	0.55	+0.8
3,961,322	+		GFF3922	0.55	+2.4
3,961,359	+		GFF3922	0.57	-0.8
3,961,371	+		GFF3922	0.58	+0.4
3,961,379	-		GFF3922	0.58	-0.4
3,961,379	-		GFF3922	0.58	+0.0
3,961,381	+		GFF3922	0.59	-1.0
3,961,394	-		GFF3922	0.59	+1.0
3,961,394	-		GFF3922	0.59	+0.1
3,961,404	+		GFF3922	0.60	+0.3
3,961,496	+		GFF3922	0.65	+0.3
3,961,496	+		GFF3922	0.65	-0.0
3,961,530	-		GFF3922	0.67	+0.1
3,961,536	-		GFF3922	0.68	+0.7
3,961,536	-		GFF3922	0.68	-0.4
3,961,546	-		GFF3922	0.68	+0.1
3,961,551	+		GFF3922	0.69	-0.7
3,961,551	+		GFF3922	0.69	+0.4
3,961,551	+		GFF3922	0.69	-0.1
3,961,551	+		GFF3922	0.69	-0.0
3,961,556	+		GFF3922	0.69	-0.6
3,961,561	+		GFF3922	0.69	+1.2
3,961,582	-		GFF3922	0.71	+1.1
3,961,584	+		GFF3922	0.71	-0.9
3,961,619	+		GFF3922	0.73	+0.3
3,961,628	+		GFF3922	0.73	-1.0
3,961,628	+		GFF3922	0.73	-0.2
3,961,644	+		GFF3922	0.74	+0.4
3,961,644	+		GFF3922	0.74	-0.1
3,961,644	+		GFF3922	0.74	-0.0
3,961,644	+		GFF3922	0.74	-1.7
3,961,644	+		GFF3922	0.74	+0.4
3,961,644	+		GFF3922	0.74	-1.2
3,961,644	+		GFF3922	0.74	-0.3
3,961,644	+		GFF3922	0.74	+1.1
3,961,644	+		GFF3922	0.74	+0.5
3,961,644	+		GFF3922	0.74	-0.7
3,961,644	+		GFF3922	0.74	-2.4
3,961,644	+		GFF3922	0.74	-0.1
3,961,644	+		GFF3922	0.74	-0.4
3,961,644	+		GFF3922	0.74	-1.8
3,961,652	-		GFF3922	0.75	-1.6
3,961,652	-		GFF3922	0.75	-0.7
3,961,652	-		GFF3922	0.75	-0.3
3,961,652	-		GFF3922	0.75	-0.0
3,961,652	-		GFF3922	0.75	+1.5
3,961,652	-		GFF3922	0.75	-0.2
3,961,652	-		GFF3922	0.75	-1.0
3,961,652	-		GFF3922	0.75	-1.3
3,961,652	-		GFF3922	0.75	-1.7
3,961,652	-		GFF3922	0.75	+0.6
3,961,661	+		GFF3922	0.75	-0.8
3,961,669	-		GFF3922	0.76	+1.1
3,961,694	-		GFF3922	0.77	-1.6
3,961,702	+		GFF3922	0.78	-0.4
3,961,702	+		GFF3922	0.78	-0.3
3,961,710	-		GFF3922	0.78	-0.9
3,961,722	+		GFF3922	0.79	-2.0
3,961,722	+		GFF3922	0.79	-0.5
3,961,725	-		GFF3922	0.79	+1.1
3,961,728	+		GFF3922	0.79	+0.6
3,961,796	-		GFF3922	0.83	-0.8
3,961,801	-		GFF3922	0.84	+1.0
3,961,809	+		GFF3922	0.84	+0.9
3,961,817	-		GFF3922	0.84	-0.3
3,961,819	+		GFF3922	0.85	+1.1
3,961,819	+		GFF3922	0.85	-0.8
3,961,826	-		GFF3922	0.85	-0.5
3,961,827	-		GFF3922	0.85	-0.7
3,961,827	-		GFF3922	0.85	-0.2
3,961,828	+		GFF3922	0.85	-0.6
3,961,835	+		GFF3922	0.86	-1.3
3,961,835	+		GFF3922	0.86	+0.2
3,961,836	-		GFF3922	0.86	+1.1
3,961,838	+		GFF3922	0.86	+0.8
3,961,840	+		GFF3922	0.86	+0.5
3,961,840	+		GFF3922	0.86	-0.9
3,961,843	-		GFF3922	0.86	-0.2
3,961,843	-		GFF3922	0.86	-1.5
3,961,846	-		GFF3922	0.86	+0.3
3,961,846	-		GFF3922	0.86	-0.5
3,961,846	-		GFF3922	0.86	+0.6
3,961,848	-		GFF3922	0.86	-1.5
3,961,848	-		GFF3922	0.86	-1.1
3,961,848	-		GFF3922	0.86	+0.5
3,961,848	-		GFF3922	0.86	+0.3
3,961,848	-		GFF3922	0.86	-0.1
3,961,848	-		GFF3922	0.86	-1.3
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3,961,861	+		GFF3922	0.87	+0.1
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3,961,900	+		GFF3922	0.89	+0.8
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3,961,933	+				-1.9
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3,961,933	+				-1.0
3,961,933	+				-1.4
3,961,933	+				-0.1
3,961,933	+				-0.5
3,961,938	+				+0.1
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3,961,941	-				-1.8
3,961,941	-				-0.9
3,961,941	-				-2.3
3,961,941	-				+0.3
3,961,941	-				-2.3
3,961,943	+				-1.0
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3,961,948	+				-2.2
3,961,948	+				+0.9
3,961,948	+				-0.7
3,961,948	+				-0.1
3,961,948	+				+0.2
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3,961,951	-				+0.3
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3,961,956	-				-0.6
3,961,956	-				-1.5
3,961,956	-				-0.2
3,961,956	-				-1.1
3,961,989	+				-1.6
3,961,990	+				+0.6
3,961,995	+				-1.3
3,961,998	-				+0.6
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3,961,998	-				-0.2
3,961,998	-				-0.2
3,962,020	-				+0.0
3,962,032	+				-1.1
3,962,032	+				-0.5
3,962,047	+				-0.6
3,962,066	+				+0.2
3,962,079	-				-0.7
3,962,079	-				-0.8
3,962,084	+				+0.4
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3,962,139	+				-0.8
3,962,146	+				-0.8
3,962,147	-				-2.6
3,962,156	+				-0.6
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