Strain Fitness in Sphingobium sp. HT1-2 around GFF3915

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,951,673	-		GFF3914	0.41	-0.2
3,951,717	-		GFF3914	0.44	-0.9
3,951,769	-		GFF3914	0.48	-1.6
3,951,773	-		GFF3914	0.48	+0.3
3,951,788	-		GFF3914	0.50	+1.1
3,951,803	+		GFF3914	0.51	-1.1
3,951,817	-		GFF3914	0.52	-0.8
3,951,846	-		GFF3914	0.54	-0.5
3,951,853	+		GFF3914	0.54	+1.0
3,951,853	+		GFF3914	0.54	-1.9
3,951,853	-		GFF3914	0.54	+2.1
3,951,861	-		GFF3914	0.55	-1.2
3,951,861	-		GFF3914	0.55	-0.7
3,951,861	-		GFF3914	0.55	+0.4
3,951,863	+		GFF3914	0.55	-0.9
3,951,871	-		GFF3914	0.56	+0.4
3,951,871	-		GFF3914	0.56	+0.3
3,951,871	-		GFF3914	0.56	+0.4
3,951,874	-		GFF3914	0.56	-0.3
3,951,926	-		GFF3914	0.60	-2.6
3,951,957	-		GFF3914	0.62	+0.2
3,951,987	-		GFF3914	0.65	-0.7
3,951,989	-		GFF3914	0.65	+1.2
3,951,999	-		GFF3914	0.66	-0.8
3,952,002	+		GFF3914	0.66	+0.1
3,952,010	-		GFF3914	0.66	-1.5
3,952,020	+		GFF3914	0.67	+0.4
3,952,028	+		GFF3914	0.68	+0.0
3,952,031	-		GFF3914	0.68	-2.3
3,952,036	-		GFF3914	0.68	-1.9
3,952,036	-		GFF3914	0.68	-0.8
3,952,037	-		GFF3914	0.68	-0.1
3,952,059	+		GFF3914	0.70	+0.4
3,952,077	+		GFF3914	0.71	-0.5
3,952,080	-		GFF3914	0.72	-0.2
3,952,080	-		GFF3914	0.72	-0.0
3,952,082	+		GFF3914	0.72	+0.6
3,952,085	-		GFF3914	0.72	+0.7
3,952,085	-		GFF3914	0.72	-1.3
3,952,087	+		GFF3914	0.72	-0.1
3,952,087	+		GFF3914	0.72	-0.1
3,952,087	+		GFF3914	0.72	+0.3
3,952,087	+		GFF3914	0.72	-1.5
3,952,087	+		GFF3914	0.72	-0.3
3,952,087	+		GFF3914	0.72	-0.6
3,952,087	+		GFF3914	0.72	+0.4
3,952,087	+		GFF3914	0.72	+0.9
3,952,087	+		GFF3914	0.72	+0.4
3,952,087	+		GFF3914	0.72	-2.4
3,952,087	+		GFF3914	0.72	-2.7
3,952,087	+		GFF3914	0.72	+0.0
3,952,087	+		GFF3914	0.72	+0.1
3,952,087	+		GFF3914	0.72	-0.5
3,952,087	+		GFF3914	0.72	-1.8
3,952,087	+		GFF3914	0.72	-0.9
3,952,087	+		GFF3914	0.72	+0.4
3,952,092	+		GFF3914	0.73	+1.0
3,952,095	-		GFF3914	0.73	+0.7
3,952,095	-		GFF3914	0.73	-0.1
3,952,095	-		GFF3914	0.73	+0.6
3,952,095	-		GFF3914	0.73	-3.0
3,952,095	-		GFF3914	0.73	-2.1
3,952,099	+		GFF3914	0.73	-2.6
3,952,099	+		GFF3914	0.73	-1.8
3,952,099	+		GFF3914	0.73	+0.3
3,952,100	-		GFF3914	0.73	-0.5
3,952,100	-		GFF3914	0.73	-0.3
3,952,107	-		GFF3914	0.74	-0.0
3,952,107	-		GFF3914	0.74	-0.3
3,952,107	-		GFF3914	0.74	+0.1
3,952,109	+		GFF3914	0.74	-0.1
3,952,112	+		GFF3914	0.74	-1.6
3,952,112	+		GFF3914	0.74	-0.1
3,952,118	+		GFF3914	0.75	-1.4
3,952,160	+		GFF3914	0.78	+0.0
3,952,168	-		GFF3914	0.78	-0.7
3,952,188	+		GFF3914	0.80	+0.3
3,952,190	+		GFF3914	0.80	-0.8
3,952,196	-		GFF3914	0.80	-0.2
3,952,196	-		GFF3914	0.80	-0.5
3,952,196	-		GFF3914	0.80	-2.0
3,952,207	+		GFF3914	0.81	-0.3
3,952,207	+		GFF3914	0.81	+0.5
3,952,207	+		GFF3914	0.81	-0.2
3,952,215	-		GFF3914	0.82	+0.8
3,952,220	+		GFF3914	0.82	-0.1
3,952,228	-		GFF3914	0.83	-1.6
3,952,269	+		GFF3914	0.86	+0.2
3,952,272	-		GFF3914	0.86	-0.8
3,952,277	-		GFF3914	0.87	-0.9
3,952,277	-		GFF3914	0.87	-0.6
3,952,306	+		GFF3914	0.89	+0.9
3,952,319	-		GFF3914	0.90	-0.7
3,952,333	-				+0.8
3,952,343	-				-1.8
3,952,348	+				+0.8
3,952,358	+				+0.9
3,952,358	+				-1.0
3,952,361	-				-0.3
3,952,377	+				-0.3
3,952,401	+				+0.5
3,952,401	+				-0.5
3,952,401	+				-0.9
3,952,439	+				+0.5
3,952,447	-				+0.2
3,952,455	+				+0.1
3,952,457	-				-0.3
3,952,473	+				-0.9
3,952,497	-				-1.2
3,952,507	+				-0.1
3,952,515	-				+0.2
3,952,541	+				-1.6
3,952,542	+				-1.0
3,952,546	+				+0.5
3,952,549	-				-0.6
3,952,551	+				+0.9
3,952,551	+				-0.5
3,952,559	-				-0.2
3,952,563	-				+0.3
3,952,579	+				-0.1
3,952,614	+				-0.7
3,952,622	-				-1.8
3,952,624	-				+0.5
3,952,632	+				-0.7
3,952,632	+				+1.6
3,952,632	+				+0.1
3,952,632	+				-1.0
3,952,632	+				-1.7
3,952,632	+				+0.4
3,952,637	+				-1.3
3,952,640	-				-0.5
3,952,640	-				-0.7
3,952,640	-				-0.8
3,952,640	-				-2.2
3,952,640	-				-1.4
3,952,640	-				+0.2
3,952,640	-				-1.3
3,952,640	-				-2.6
3,952,645	-				-0.2
3,952,645	-				-1.6
3,952,645	-				+0.4
3,952,650	-				-0.0
3,952,674	-				-1.2
3,952,677	+				-0.6
3,952,682	+				+0.8
3,952,682	+				-0.7
3,952,682	+				+0.1
3,952,682	+				+1.4
3,952,682	+				-0.5
3,952,682	+				+1.4
3,952,682	+				-0.6
3,952,682	+				+0.1
3,952,682	+				-0.7
3,952,682	+				+0.2
3,952,682	+				-0.8
3,952,682	+				-1.8
3,952,682	+				-0.4
3,952,682	+				+0.4
3,952,682	+				-1.6
3,952,682	+				-1.7
3,952,682	+				+0.7
3,952,682	+				+0.1
3,952,690	-				+1.2
3,952,690	-				-1.5
3,952,690	-				+0.7
3,952,690	-				-0.3
3,952,690	-				-0.5
3,952,690	-				+0.8
3,952,690	-				+1.8
3,952,690	-				-1.8
3,952,690	-				+0.5
3,952,690	-				-1.7
3,952,707	+				-2.5
3,952,713	+				-0.1
3,952,714	-				-0.9
3,952,721	+				-0.3
3,952,721	-				+0.4
3,952,725	+				+0.1
3,952,742	+				-1.3
3,952,746	+				-0.3
3,952,759	-				+0.2
3,952,776	+				+0.1
3,952,776	+				-2.2
3,952,781	+				+0.0
3,952,784	-				-0.9
3,952,789	-				+0.4
3,952,808	+				-1.8
3,952,827	+		GFF3915	0.11	-0.3
3,952,829	+		GFF3915	0.11	+0.3
3,952,832	+		GFF3915	0.11	+0.5
3,952,832	+		GFF3915	0.11	-0.9
3,952,835	-		GFF3915	0.11	+1.8
3,952,835	-		GFF3915	0.11	-1.4
3,952,835	-		GFF3915	0.11	+0.2
3,952,840	-		GFF3915	0.12	-0.3
3,952,845	-		GFF3915	0.12	-1.5
3,952,845	-		GFF3915	0.12	+0.5
3,952,861	+		GFF3915	0.13	-0.3
3,952,863	+		GFF3915	0.13	-0.3
3,952,863	+		GFF3915	0.13	-1.1
3,952,864	+		GFF3915	0.13	-0.1
3,952,882	+		GFF3915	0.14	-2.2
3,952,942	+		GFF3915	0.17	+0.2
3,952,950	-		GFF3915	0.18	-0.1
3,952,955	-		GFF3915	0.18	-0.8
3,952,957	+		GFF3915	0.18	+0.2
3,952,965	-		GFF3915	0.19	+0.7
3,953,005	+		GFF3915	0.21	-0.8
3,953,005	+		GFF3915	0.21	-2.2
3,953,005	+		GFF3915	0.21	-2.3
3,953,005	+		GFF3915	0.21	-1.0
3,953,005	+		GFF3915	0.21	-0.7
3,953,005	+		GFF3915	0.21	-1.5
3,953,005	+		GFF3915	0.21	+0.9
3,953,005	+		GFF3915	0.21	+0.7
3,953,005	+		GFF3915	0.21	+0.2
3,953,005	+		GFF3915	0.21	-1.3
3,953,011	+		GFF3915	0.21	-0.6
3,953,011	+		GFF3915	0.21	+1.4
3,953,013	-		GFF3915	0.21	-1.1
3,953,013	-		GFF3915	0.21	+0.4
3,953,013	-		GFF3915	0.21	+0.4
3,953,013	-		GFF3915	0.21	+0.8
3,953,013	-		GFF3915	0.21	-1.2
3,953,013	-		GFF3915	0.21	-1.5
3,953,019	-		GFF3915	0.22	-1.2
3,953,021	+		GFF3915	0.22	-2.1
3,953,024	-		GFF3915	0.22	-3.3
3,953,024	-		GFF3915	0.22	-1.2
3,953,034	-		GFF3915	0.23	+0.3
3,953,039	+		GFF3915	0.23	+0.5
3,953,039	+		GFF3915	0.23	+1.0
3,953,039	+		GFF3915	0.23	+0.1
3,953,041	-		GFF3915	0.23	-2.0
3,953,044	+		GFF3915	0.23	-0.7
3,953,044	+		GFF3915	0.23	+0.5
3,953,044	+		GFF3915	0.23	-0.4
3,953,044	+		GFF3915	0.23	-1.5
3,953,044	+		GFF3915	0.23	-0.5
3,953,052	-		GFF3915	0.24	-1.2
3,953,059	+		GFF3915	0.24	-0.5
3,953,073	+		GFF3915	0.25	-0.8
3,953,073	+		GFF3915	0.25	+0.1
3,953,101	+		GFF3915	0.26	+0.5
3,953,110	+		GFF3915	0.27	+0.2
3,953,149	-		GFF3915	0.29	-1.0
3,953,153	+		GFF3915	0.29	-0.3
3,953,153	+		GFF3915	0.29	-0.9
3,953,159	+		GFF3915	0.30	-0.1
3,953,159	+		GFF3915	0.30	+0.1
3,953,161	-		GFF3915	0.30	-0.4
3,953,161	-		GFF3915	0.30	-0.4
3,953,162	-		GFF3915	0.30	-0.4
3,953,162	-		GFF3915	0.30	-1.6
3,953,178	-		GFF3915	0.31	-0.3
3,953,183	-		GFF3915	0.31	-0.5
3,953,187	+		GFF3915	0.31	-0.2
3,953,187	+		GFF3915	0.31	+0.2
3,953,193	-		GFF3915	0.32	+0.7
3,953,193	-		GFF3915	0.32	-2.2
3,953,194	-		GFF3915	0.32	+0.3
3,953,210	+		GFF3915	0.33	-0.3
3,953,227	+		GFF3915	0.34	-0.3
3,953,230	-		GFF3915	0.34	+0.9
3,953,247	+		GFF3915	0.35	-1.6
3,953,256	-		GFF3915	0.35	+2.0
3,953,319	+		GFF3915	0.39	-0.2
3,953,327	-		GFF3915	0.39	+1.3
3,953,327	-		GFF3915	0.39	-1.4
3,953,359	-		GFF3915	0.41	-1.2
3,953,368	-		GFF3915	0.41	+0.2
3,953,388	+		GFF3915	0.43	-2.3
3,953,407	+		GFF3915	0.44	+0.0
3,953,413	-		GFF3915	0.44	+0.4
3,953,420	+		GFF3915	0.44	-2.0
3,953,420	+		GFF3915	0.44	+1.3
3,953,420	+		GFF3915	0.44	-1.7
3,953,420	+		GFF3915	0.44	+0.0
3,953,428	-		GFF3915	0.45	-0.6
3,953,428	-		GFF3915	0.45	-2.3
3,953,428	-		GFF3915	0.45	+1.4
3,953,428	-		GFF3915	0.45	-0.0
3,953,428	-		GFF3915	0.45	-0.8
3,953,428	-		GFF3915	0.45	+0.5
3,953,428	-		GFF3915	0.45	-1.2
3,953,428	-		GFF3915	0.45	-0.7
3,953,428	-		GFF3915	0.45	-3.2
3,953,428	-		GFF3915	0.45	-0.6
3,953,434	-		GFF3915	0.45	-0.5
3,953,506	+		GFF3915	0.49	-1.7
3,953,526	+		GFF3915	0.50	-1.3
3,953,531	+		GFF3915	0.51	+0.0
3,953,531	+		GFF3915	0.51	-1.3
3,953,534	-		GFF3915	0.51	-0.8
3,953,534	-		GFF3915	0.51	-1.1
3,953,539	-		GFF3915	0.51	+0.1
3,953,552	-		GFF3915	0.52	-1.5
3,953,573	-		GFF3915	0.53	+0.2
3,953,583	-		GFF3915	0.54	-0.3
3,953,618	+		GFF3915	0.56	-0.3
3,953,619	+		GFF3915	0.56	-1.0
3,953,627	-		GFF3915	0.56	+0.6
3,953,642	+		GFF3915	0.57	-0.5
3,953,642	+		GFF3915	0.57	-1.3
3,953,647	+		GFF3915	0.57	+0.1
3,953,650	-		GFF3915	0.57	+0.7
3,953,652	+		GFF3915	0.58	-0.6
3,953,655	-		GFF3915	0.58	-0.6
3,953,660	-		GFF3915	0.58	+1.1
3,953,660	-		GFF3915	0.58	-1.8
3,953,660	-		GFF3915	0.58	+0.8
3,953,660	-		GFF3915	0.58	-1.0
3,953,733	-		GFF3915	0.62	-1.4
3,953,733	-		GFF3915	0.62	-1.6
3,953,750	+		GFF3915	0.63	+1.2
3,953,766	-		GFF3915	0.64	+0.1
3,953,775	+		GFF3915	0.64	+0.0
3,953,803	-		GFF3915	0.66	-1.8
3,953,837	+		GFF3915	0.68	-2.7
3,953,861	+		GFF3915	0.69	-0.3
3,953,864	-		GFF3915	0.69	-0.6
3,953,869	-		GFF3915	0.70	-1.8
3,953,869	-		GFF3915	0.70	-1.6
3,953,882	-		GFF3915	0.71	-0.4
3,953,886	-		GFF3915	0.71	+0.4
3,953,892	-		GFF3915	0.71	-0.9
3,953,898	+		GFF3915	0.71	-0.6
3,953,906	-		GFF3915	0.72	+0.1
3,953,912	+		GFF3915	0.72	-0.6
3,953,919	+		GFF3915	0.73	-0.1
3,953,972	-		GFF3915	0.76	-1.8
3,953,983	+		GFF3915	0.76	-0.2
3,953,983	+		GFF3915	0.76	-1.5
3,953,991	-		GFF3915	0.77	-2.0
3,953,993	+		GFF3915	0.77	-0.1
3,953,998	+		GFF3915	0.77	+0.2
3,954,012	+		GFF3915	0.78	-0.1
3,954,015	-		GFF3915	0.78	-0.3
3,954,020	-		GFF3915	0.78	-0.9
3,954,022	-		GFF3915	0.78	-2.1
3,954,022	-		GFF3915	0.78	-0.8
3,954,037	-		GFF3915	0.79	-0.1
3,954,037	-		GFF3915	0.79	+1.5
3,954,037	-		GFF3915	0.79	-0.0
3,954,037	-		GFF3915	0.79	-0.1
3,954,075	+		GFF3915	0.81	+1.0
3,954,079	+		GFF3915	0.82	-1.7
3,954,079	+		GFF3915	0.82	+0.1
3,954,079	+		GFF3915	0.82	-1.9
3,954,079	+		GFF3915	0.82	+0.1
3,954,079	+		GFF3915	0.82	-0.4
3,954,079	+		GFF3915	0.82	-1.3
3,954,087	-		GFF3915	0.82	-0.3
3,954,087	-		GFF3915	0.82	+0.2
3,954,087	-		GFF3915	0.82	+0.5
3,954,114	+		GFF3915	0.84	+1.1
3,954,117	-		GFF3915	0.84	-1.3
3,954,141	-		GFF3915	0.85	+0.2
3,954,143	+		GFF3915	0.85	+0.8
3,954,151	-		GFF3915	0.86	-0.5
3,954,155	+		GFF3915	0.86	+0.0
3,954,163	+		GFF3915	0.86	+0.4
3,954,247	+				-1.9
3,954,247	+				-0.9
3,954,247	+				-1.2
3,954,250	-				-0.1
3,954,255	-				+1.2
3,954,255	-				+0.2
3,954,255	-				-1.0
3,954,255	-				+1.0
3,954,267	+				+1.0
3,954,267	+				-1.6
3,954,267	-				-0.1
3,954,267	-				+0.4
3,954,272	+				+0.9
3,954,278	+				-0.4
3,954,280	-				+0.0
3,954,285	-				+0.2
3,954,305	-				+0.5
3,954,351	-				+0.3
3,954,351	-				+1.1
3,954,351	-				-0.7
3,954,361	+				-1.3
3,954,371	-				-1.7
3,954,371	-				+0.2
3,954,378	+				+0.9
3,954,393	-				-0.0
3,954,399	+				+1.0
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3,954,406	+				-0.6
3,954,414	-				-0.5
3,954,453	-				+0.6
3,954,471	-				-0.7
3,954,488	-				-1.6
3,954,516	+				+0.2
3,954,529	+				-0.3
3,954,529	+				-1.2
3,954,529	+				-0.9
3,954,529	+				+0.2
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3,954,529	+				+0.4
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3,954,537	-				-0.3
3,954,537	-				-0.7
3,954,537	-				-0.7
3,954,584	-				+0.1
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3,954,861	-		GFF3916	0.37	-1.1
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3,954,861	-		GFF3916	0.37	-2.3
3,954,861	-		GFF3916	0.37	-1.0
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3,954,861	-		GFF3916	0.37	-1.3
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3,954,871	-		GFF3916	0.38	-2.3
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3,954,920	+		GFF3916	0.43	-2.1
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3,955,006	+		GFF3916	0.51	+1.0
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3,955,064	+		GFF3916	0.57	+1.2
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3,955,113	+		GFF3916	0.62	-1.1
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3,955,135	+		GFF3916	0.64	-0.8
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