Strain Fitness in Sphingobium sp. HT1-2 around GFF3909

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,948,627	+				+0.9
3,948,627	+				-1.1
3,948,628	+				+0.2
3,948,638	+				-0.3
3,948,646	-				+1.1
3,948,668	+		GFF3909	0.13	+0.6
3,948,711	-		GFF3909	0.23	-1.8
3,948,718	+		GFF3909	0.25	+1.0
3,948,718	+		GFF3909	0.25	+0.3
3,948,730	-		GFF3909	0.28	+0.4
3,948,775	+		GFF3909	0.39	-0.7
3,948,835	-		GFF3909	0.54	+1.0
3,948,839	-		GFF3909	0.55	-1.2
3,948,861	-		GFF3909	0.60	+0.4
3,948,876	+		GFF3909	0.64	-0.2
3,948,877	+		GFF3909	0.64	-1.0
3,948,891	+		GFF3909	0.67	-0.9
3,948,914	+		GFF3909	0.73	-0.3
3,948,916	+		GFF3909	0.73	-1.0
3,948,916	+		GFF3909	0.73	+0.2
3,948,917	-		GFF3909	0.73	+0.1
3,948,924	-		GFF3909	0.75	-0.4
3,948,939	+		GFF3909	0.79	-0.1
3,948,947	-		GFF3909	0.81	-0.6
3,948,947	-		GFF3909	0.81	-1.6
3,948,949	+		GFF3909	0.81	-1.3
3,948,964	-		GFF3909	0.85	-0.5
3,948,982	+		GFF3909	0.89	-1.8
3,949,000	+				-0.9
3,949,010	+				+0.5
3,949,010	+				-0.8
3,949,010	+				-0.3
3,949,010	+				-0.6
3,949,018	-				+1.0
3,949,018	-				+0.2
3,949,018	-				-1.0
3,949,021	+				-0.6
3,949,053	+				+0.5
3,949,053	+				+0.3
3,949,053	+				+0.7
3,949,053	+				-0.8
3,949,053	+				-0.7
3,949,053	+				-0.9
3,949,061	-				-0.1
3,949,061	-				-1.3
3,949,061	-				-0.8
3,949,065	+				-2.2
3,949,072	-				-1.1
3,949,112	+				-0.2
3,949,112	+				-0.4
3,949,112	+				-0.9
3,949,112	+				-0.8
3,949,119	-				-1.7
3,949,119	-				-1.3
3,949,120	-				-1.5
3,949,120	-				+0.5
3,949,120	-				+0.1
3,949,120	-				-0.6
3,949,120	-				-1.9
3,949,120	-				-1.2
3,949,120	-				+0.1
3,949,127	-				+0.4
3,949,141	+				-1.5
3,949,152	+				-0.4
3,949,155	-				-0.8
3,949,157	-				+0.7
3,949,174	+		GFF3910	0.11	+0.5
3,949,219	+		GFF3910	0.16	+0.7
3,949,219	+		GFF3910	0.16	-0.5
3,949,227	-		GFF3910	0.16	+0.6
3,949,227	-		GFF3910	0.16	+0.7
3,949,277	-		GFF3910	0.22	+0.6
3,949,289	+		GFF3910	0.23	-0.0
3,949,289	+		GFF3910	0.23	+0.1
3,949,289	+		GFF3910	0.23	+0.2
3,949,289	+		GFF3910	0.23	-0.0
3,949,289	+		GFF3910	0.23	+0.1
3,949,289	+		GFF3910	0.23	-0.4
3,949,289	+		GFF3910	0.23	+0.3
3,949,289	+		GFF3910	0.23	+0.6
3,949,289	+		GFF3910	0.23	+1.8
3,949,289	+		GFF3910	0.23	-0.8
3,949,289	+		GFF3910	0.23	+0.1
3,949,289	+		GFF3910	0.23	-0.2
3,949,289	+		GFF3910	0.23	-0.9
3,949,289	+		GFF3910	0.23	-1.8
3,949,289	+		GFF3910	0.23	-1.6
3,949,289	+		GFF3910	0.23	+0.7
3,949,289	+		GFF3910	0.23	-0.4
3,949,289	+		GFF3910	0.23	-0.8
3,949,289	+		GFF3910	0.23	+0.3
3,949,297	-		GFF3910	0.24	-0.9
3,949,297	-		GFF3910	0.24	-1.3
3,949,297	-		GFF3910	0.24	-0.5
3,949,297	-		GFF3910	0.24	+0.5
3,949,297	-		GFF3910	0.24	-0.2
3,949,297	-		GFF3910	0.24	+0.8
3,949,297	-		GFF3910	0.24	-0.3
3,949,297	-		GFF3910	0.24	+0.2
3,949,297	-		GFF3910	0.24	-1.8
3,949,330	+		GFF3910	0.27	+0.4
3,949,332	+		GFF3910	0.27	-0.2
3,949,366	-		GFF3910	0.31	+0.7
3,949,368	+		GFF3910	0.31	-1.5
3,949,394	+		GFF3910	0.34	+0.5
3,949,399	+		GFF3910	0.34	+0.1
3,949,399	+		GFF3910	0.34	+0.7
3,949,399	+		GFF3910	0.34	-0.0
3,949,411	+		GFF3910	0.35	+0.9
3,949,412	-		GFF3910	0.35	-0.4
3,949,417	-		GFF3910	0.36	+0.7
3,949,421	-		GFF3910	0.36	+0.3
3,949,458	-		GFF3910	0.40	+0.4
3,949,469	+		GFF3910	0.41	-0.8
3,949,488	+		GFF3910	0.43	-1.5
3,949,488	+		GFF3910	0.43	-0.5
3,949,488	+		GFF3910	0.43	-1.1
3,949,497	-		GFF3910	0.44	+0.2
3,949,498	+		GFF3910	0.44	-1.3
3,949,502	-		GFF3910	0.45	+0.1
3,949,502	-		GFF3910	0.45	+0.4
3,949,502	-		GFF3910	0.45	+0.5
3,949,506	-		GFF3910	0.45	-1.4
3,949,506	-		GFF3910	0.45	-1.1
3,949,517	-		GFF3910	0.46	-0.2
3,949,518	-		GFF3910	0.46	-0.0
3,949,531	+		GFF3910	0.48	-0.6
3,949,536	-		GFF3910	0.48	+0.3
3,949,567	+		GFF3910	0.51	-0.9
3,949,575	-		GFF3910	0.52	+0.7
3,949,579	+		GFF3910	0.53	+0.1
3,949,581	-		GFF3910	0.53	+0.2
3,949,594	+		GFF3910	0.54	-0.8
3,949,597	-		GFF3910	0.54	-0.0
3,949,598	-		GFF3910	0.54	-1.6
3,949,602	-		GFF3910	0.55	-0.4
3,949,622	+		GFF3910	0.57	-0.2
3,949,622	-		GFF3910	0.57	-0.6
3,949,625	-		GFF3910	0.57	+1.0
3,949,630	-		GFF3910	0.58	-0.8
3,949,630	-		GFF3910	0.58	-1.3
3,949,635	-		GFF3910	0.58	-1.5
3,949,640	-		GFF3910	0.59	-0.1
3,949,645	+		GFF3910	0.59	+0.4
3,949,657	+		GFF3910	0.61	+0.4
3,949,658	-		GFF3910	0.61	-0.4
3,949,665	-		GFF3910	0.61	+1.5
3,949,701	-		GFF3910	0.65	-0.8
3,949,709	-		GFF3910	0.66	+0.8
3,949,723	+		GFF3910	0.67	+0.1
3,949,728	+		GFF3910	0.68	+0.2
3,949,731	-		GFF3910	0.68	-0.4
3,949,731	-		GFF3910	0.68	-0.2
3,949,731	-		GFF3910	0.68	-2.0
3,949,751	+		GFF3910	0.70	-0.2
3,949,758	+		GFF3910	0.71	-0.2
3,949,759	-		GFF3910	0.71	+0.3
3,949,803	+		GFF3910	0.75	-2.3
3,949,820	+		GFF3910	0.77	+0.9
3,949,820	+		GFF3910	0.77	-0.4
3,949,828	-		GFF3910	0.78	-0.2
3,949,830	+		GFF3910	0.78	+0.8
3,949,833	-		GFF3910	0.79	+0.2
3,949,835	-		GFF3910	0.79	+1.1
3,949,858	+		GFF3910	0.81	-2.1
3,949,879	+		GFF3910	0.83	-0.1
3,949,885	+		GFF3910	0.84	-1.3
3,949,886	+		GFF3910	0.84	-0.6
3,949,886	+		GFF3910	0.84	+0.1
3,949,886	+		GFF3910	0.84	-0.6
3,949,886	+		GFF3910	0.84	+0.1
3,949,886	+		GFF3910	0.84	+0.9
3,949,886	+		GFF3910	0.84	-0.1
3,949,886	+		GFF3910	0.84	-0.1
3,949,886	+		GFF3910	0.84	-1.0
3,949,894	-		GFF3910	0.85	+0.5
3,949,894	-		GFF3910	0.85	-1.8
3,949,894	-		GFF3910	0.85	-1.5
3,949,894	-		GFF3910	0.85	+0.7
3,949,894	-		GFF3910	0.85	-2.1
3,949,894	-		GFF3910	0.85	-0.1
3,949,894	-		GFF3910	0.85	-1.8
3,949,894	-		GFF3910	0.85	-1.0
3,949,894	-		GFF3910	0.85	+0.7
3,949,905	+		GFF3910	0.86	+0.1
3,949,907	+		GFF3910	0.86	-1.9
3,949,913	-		GFF3910	0.87	-0.7
3,949,913	-		GFF3910	0.87	-1.2
3,949,915	+		GFF3910	0.87	-0.1
3,949,915	+		GFF3910	0.87	-0.2
3,949,915	+		GFF3910	0.87	+0.0
3,949,915	+		GFF3910	0.87	-0.2
3,949,923	-		GFF3910	0.88	-1.0
3,949,923	-		GFF3910	0.88	+0.0
3,949,934	+		GFF3910	0.89	-0.8
3,949,942	-		GFF3910	0.90	+0.3
3,949,942	-		GFF3910	0.90	-2.1
3,949,948	+				-1.0
3,949,957	-				+0.5
3,949,977	+				-1.8
3,950,021	+				+0.2
3,950,021	+				-0.9
3,950,021	+				-1.3
3,950,021	+				-1.1