Strain Fitness in Sphingobium sp. HT1-2 around GFF3906

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,941,849	+				-2.4
3,941,877	-				-1.0
3,941,890	+				-0.1
3,941,890	+				+0.5
3,941,904	-				+0.2
3,941,908	-				-0.1
3,941,913	+				-0.5
3,941,913	+				-1.4
3,941,913	+				-0.7
3,941,921	-				-0.8
3,941,934	-				+1.1
3,941,936	+				-1.2
3,941,939	-				-1.9
3,941,939	-				-1.4
3,941,939	-				-0.2
3,941,952	+				+0.2
3,941,958	-				-0.9
3,941,977	+				+0.2
3,941,996	+				-0.8
3,941,996	+				-1.6
3,941,996	+				+0.4
3,941,996	+				-0.2
3,941,996	+				+1.0
3,941,996	+				-0.2
3,941,996	+				-1.2
3,942,004	-				-1.1
3,942,004	-				+1.0
3,942,004	-				-0.2
3,942,004	-				+0.5
3,942,004	-				-0.3
3,942,004	-				-1.2
3,942,004	-				+0.7
3,942,004	-				-1.3
3,942,020	-				-0.8
3,942,023	+				+0.2
3,942,023	+				-0.2
3,942,079	+		GFF3906	0.12	-0.1
3,942,091	+		GFF3906	0.13	-0.9
3,942,095	+		GFF3906	0.13	-0.1
3,942,095	+		GFF3906	0.13	+0.5
3,942,101	+		GFF3906	0.13	-1.2
3,942,109	-		GFF3906	0.14	-1.5
3,942,143	+		GFF3906	0.16	-0.6
3,942,143	+		GFF3906	0.16	+0.1
3,942,149	+		GFF3906	0.16	-0.9
3,942,151	+		GFF3906	0.16	-0.0
3,942,156	+		GFF3906	0.16	-0.6
3,942,159	-		GFF3906	0.16	-0.8
3,942,177	+		GFF3906	0.17	-3.3
3,942,177	+		GFF3906	0.17	-2.0
3,942,177	+		GFF3906	0.17	+0.1
3,942,177	+		GFF3906	0.17	+1.4
3,942,177	+		GFF3906	0.17	-0.9
3,942,178	-		GFF3906	0.17	+0.1
3,942,185	-		GFF3906	0.18	-0.8
3,942,185	-		GFF3906	0.18	-0.9
3,942,185	-		GFF3906	0.18	-0.4
3,942,185	-		GFF3906	0.18	-0.6
3,942,190	-		GFF3906	0.18	-0.6
3,942,198	+		GFF3906	0.19	+0.1
3,942,203	+		GFF3906	0.19	-1.3
3,942,206	-		GFF3906	0.19	-1.5
3,942,206	-		GFF3906	0.19	+0.2
3,942,209	-		GFF3906	0.19	-1.2
3,942,217	+		GFF3906	0.20	-2.5
3,942,224	+		GFF3906	0.20	-1.1
3,942,224	+		GFF3906	0.20	-0.1
3,942,226	-		GFF3906	0.20	-1.2
3,942,232	-		GFF3906	0.20	+0.6
3,942,267	-		GFF3906	0.22	-0.9
3,942,276	+		GFF3906	0.23	+0.2
3,942,284	+		GFF3906	0.23	-1.2
3,942,284	+		GFF3906	0.23	-1.0
3,942,284	-		GFF3906	0.23	-0.2
3,942,284	-		GFF3906	0.23	-2.0
3,942,292	-		GFF3906	0.24	-2.5
3,942,292	-		GFF3906	0.24	-0.4
3,942,292	-		GFF3906	0.24	-1.9
3,942,292	-		GFF3906	0.24	+0.7
3,942,304	-		GFF3906	0.24	-0.9
3,942,343	+		GFF3906	0.27	-0.8
3,942,379	+		GFF3906	0.29	-0.7
3,942,401	+		GFF3906	0.30	-1.4
3,942,419	-		GFF3906	0.31	+0.7
3,942,425	-		GFF3906	0.31	-0.1
3,942,452	-		GFF3906	0.33	-2.1
3,942,465	+		GFF3906	0.33	-1.5
3,942,485	+		GFF3906	0.34	-0.2
3,942,497	+		GFF3906	0.35	-0.4
3,942,497	+		GFF3906	0.35	-0.3
3,942,497	+		GFF3906	0.35	-0.1
3,942,497	+		GFF3906	0.35	-0.5
3,942,505	-		GFF3906	0.36	+0.2
3,942,505	-		GFF3906	0.36	-1.8
3,942,505	-		GFF3906	0.36	+0.5
3,942,505	-		GFF3906	0.36	+0.4
3,942,505	-		GFF3906	0.36	+1.0
3,942,505	-		GFF3906	0.36	-0.3
3,942,510	-		GFF3906	0.36	-0.0
3,942,510	-		GFF3906	0.36	-1.6
3,942,520	+		GFF3906	0.36	-0.3
3,942,520	+		GFF3906	0.36	-0.6
3,942,527	-		GFF3906	0.37	-0.2
3,942,528	-		GFF3906	0.37	-0.1
3,942,541	+		GFF3906	0.38	-1.1
3,942,573	+		GFF3906	0.39	-0.6
3,942,581	-		GFF3906	0.40	-0.3
3,942,582	+		GFF3906	0.40	-0.6
3,942,592	+		GFF3906	0.40	-1.7
3,942,615	+		GFF3906	0.42	+0.6
3,942,616	+		GFF3906	0.42	-0.6
3,942,635	+		GFF3906	0.43	-1.6
3,942,638	+		GFF3906	0.43	-0.2
3,942,638	+		GFF3906	0.43	-0.2
3,942,638	+		GFF3906	0.43	-0.3
3,942,638	+		GFF3906	0.43	+2.2
3,942,638	+		GFF3906	0.43	+0.5
3,942,646	-		GFF3906	0.43	-0.9
3,942,646	-		GFF3906	0.43	-1.2
3,942,646	-		GFF3906	0.43	-1.5
3,942,646	-		GFF3906	0.43	-0.5
3,942,646	-		GFF3906	0.43	+0.3
3,942,648	+		GFF3906	0.44	-0.4
3,942,648	-		GFF3906	0.44	-0.7
3,942,648	-		GFF3906	0.44	+1.0
3,942,648	-		GFF3906	0.44	+1.2
3,942,648	-		GFF3906	0.44	-3.4
3,942,677	+		GFF3906	0.45	-0.8
3,942,677	+		GFF3906	0.45	-0.3
3,942,677	+		GFF3906	0.45	-0.2
3,942,677	+		GFF3906	0.45	-0.8
3,942,677	+		GFF3906	0.45	-0.3
3,942,677	+		GFF3906	0.45	+0.6
3,942,677	+		GFF3906	0.45	+0.6
3,942,683	+		GFF3906	0.45	-0.1
3,942,685	-		GFF3906	0.46	-0.8
3,942,685	-		GFF3906	0.46	-1.1
3,942,685	-		GFF3906	0.46	+0.2
3,942,685	-		GFF3906	0.46	-0.1
3,942,685	-		GFF3906	0.46	-0.0
3,942,685	-		GFF3906	0.46	-1.0
3,942,701	-		GFF3906	0.46	-1.4
3,942,707	+		GFF3906	0.47	-1.7
3,942,715	-		GFF3906	0.47	-0.8
3,942,740	-		GFF3906	0.49	+0.1
3,942,743	+		GFF3906	0.49	-1.9
3,942,772	-		GFF3906	0.50	-2.3
3,942,780	+		GFF3906	0.51	-1.9
3,942,787	+		GFF3906	0.51	+0.0
3,942,787	+		GFF3906	0.51	-0.2
3,942,787	+		GFF3906	0.51	-0.3
3,942,787	+		GFF3906	0.51	-0.9
3,942,787	+		GFF3906	0.51	-1.7
3,942,795	-		GFF3906	0.52	+0.2
3,942,795	-		GFF3906	0.52	-1.0
3,942,795	-		GFF3906	0.52	+0.3
3,942,795	-		GFF3906	0.52	+0.2
3,942,795	-		GFF3906	0.52	-2.0
3,942,795	-		GFF3906	0.52	-2.2
3,942,795	-		GFF3906	0.52	-1.5
3,942,795	-		GFF3906	0.52	-1.8
3,942,795	-		GFF3906	0.52	-1.0
3,942,797	+		GFF3906	0.52	-0.8
3,942,797	+		GFF3906	0.52	+0.9
3,942,797	+		GFF3906	0.52	+0.2
3,942,797	+		GFF3906	0.52	+1.7
3,942,797	+		GFF3906	0.52	-0.6
3,942,797	+		GFF3906	0.52	-0.4
3,942,805	-		GFF3906	0.52	-0.1
3,942,805	-		GFF3906	0.52	-0.7
3,942,816	+		GFF3906	0.53	+0.1
3,942,816	+		GFF3906	0.53	+0.2
3,942,819	-		GFF3906	0.53	-0.2
3,942,824	-		GFF3906	0.53	-0.3
3,942,827	+		GFF3906	0.53	-1.7
3,942,848	+		GFF3906	0.55	-0.3
3,942,853	+		GFF3906	0.55	+0.2
3,942,857	-		GFF3906	0.55	+0.2
3,942,869	-		GFF3906	0.56	+1.0
3,942,871	-		GFF3906	0.56	-1.1
3,942,884	-		GFF3906	0.57	-0.3
3,942,997	+		GFF3906	0.63	-0.3
3,943,005	+		GFF3906	0.63	-0.8
3,943,010	+		GFF3906	0.64	-0.2
3,943,036	-		GFF3906	0.65	-0.1
3,943,038	-		GFF3906	0.65	+0.6
3,943,039	+		GFF3906	0.65	-0.2
3,943,040	-		GFF3906	0.65	-0.9
3,943,053	-		GFF3906	0.66	+1.0
3,943,055	+		GFF3906	0.66	-0.7
3,943,062	+		GFF3906	0.66	+0.8
3,943,072	+		GFF3906	0.67	-1.1
3,943,072	+		GFF3906	0.67	+0.1
3,943,080	+		GFF3906	0.67	+0.7
3,943,080	+		GFF3906	0.67	-1.7
3,943,080	-		GFF3906	0.67	-1.0
3,943,080	-		GFF3906	0.67	-0.8
3,943,083	-		GFF3906	0.68	-1.2
3,943,085	+		GFF3906	0.68	+0.2
3,943,088	-		GFF3906	0.68	-0.1
3,943,098	-		GFF3906	0.68	+0.1
3,943,125	-		GFF3906	0.70	-0.5
3,943,127	+		GFF3906	0.70	-0.5
3,943,146	+		GFF3906	0.71	+0.1
3,943,146	+		GFF3906	0.71	+0.3
3,943,146	+		GFF3906	0.71	-0.5
3,943,149	+		GFF3906	0.71	+0.5
3,943,151	+		GFF3906	0.71	-1.7
3,943,154	-		GFF3906	0.72	+0.8
3,943,157	-		GFF3906	0.72	+1.6
3,943,157	-		GFF3906	0.72	-1.0
3,943,157	-		GFF3906	0.72	-0.5
3,943,157	-		GFF3906	0.72	-0.7
3,943,183	+		GFF3906	0.73	+0.7
3,943,192	+		GFF3906	0.74	+0.2
3,943,192	+		GFF3906	0.74	-0.3
3,943,200	-		GFF3906	0.74	-0.6
3,943,223	-		GFF3906	0.75	+0.7
3,943,239	+		GFF3906	0.76	-1.8
3,943,250	-		GFF3906	0.77	-1.0
3,943,261	+		GFF3906	0.77	-1.8
3,943,269	-		GFF3906	0.78	+0.2
3,943,269	-		GFF3906	0.78	-1.6
3,943,288	-		GFF3906	0.79	-1.0
3,943,288	-		GFF3906	0.79	+0.7
3,943,288	-		GFF3906	0.79	+0.1
3,943,298	-		GFF3906	0.80	-1.5
3,943,298	-		GFF3906	0.80	+0.7
3,943,332	-		GFF3906	0.81	-0.5
3,943,334	-		GFF3906	0.82	+1.9
3,943,363	-		GFF3906	0.83	+0.0
3,943,388	+		GFF3906	0.84	+0.4
3,943,405	+		GFF3906	0.85	-1.8
3,943,415	+		GFF3906	0.86	+0.7
3,943,439	+		GFF3906	0.87	-0.5
3,943,467	-		GFF3906	0.89	-0.8
3,943,482	-		GFF3906	0.90	-0.2
3,943,484	+		GFF3906	0.90	-1.3
3,943,492	+				-0.5
3,943,500	-				-0.8
3,943,502	-				-0.5
3,943,502	-				+1.1
3,943,508	+				-1.1
3,943,508	+				-1.2
3,943,512	-				+0.5
3,943,516	-				+0.3
3,943,516	-				+0.7
3,943,516	-				-0.9
3,943,519	+				-1.5
3,943,527	-				-3.0
3,943,561	+				-0.3
3,943,571	+				-0.6
3,943,571	+				+1.0
3,943,571	+				-0.4
3,943,571	+				+0.1
3,943,571	+				+0.7
3,943,571	+				-2.6
3,943,571	+				-1.0
3,943,571	-				-0.0
3,943,579	-				-0.1
3,943,579	-				+0.8
3,943,579	-				-0.3
3,943,579	-				-0.3
3,943,579	-				-0.0
3,943,579	-				-0.1
3,943,585	-				+0.2
3,943,592	+				-0.5
3,943,597	+				+0.2
3,943,607	+				-3.3
3,943,615	-				+0.6
3,943,615	-				+0.8
3,943,617	+				-0.6
3,943,622	+				-1.3
3,943,624	+				-2.8
3,943,625	-				-0.9
3,943,650	-				-0.3
3,943,665	-				-0.0
3,943,679	+				+0.0
3,943,681	-				-0.4
3,943,682	-				-0.3
3,943,686	+				-0.4
3,943,687	-				-1.8
3,943,687	-				+1.1
3,943,691	-				+0.5
3,943,734	+				-1.0
3,943,772	-				+0.2
3,943,779	+				+0.2
3,943,784	+				-0.6
3,943,784	+				-0.3
3,943,784	+				-1.9
3,943,784	+				-0.8
3,943,784	+				-0.8
3,943,784	+				-0.1
3,943,786	+				-1.2
3,943,792	-				-0.6
3,943,792	-				-0.3
3,943,792	-				+0.2
3,943,792	-				-0.3
3,943,792	-				-1.3
3,943,792	-				-1.8
3,943,792	-				-0.2
3,943,802	-				+0.3
3,943,816	-				-0.1
3,943,834	-				+0.4
3,943,843	-				-0.4
3,943,881	-		GFF3907	0.13	-0.9
3,943,882	-		GFF3907	0.13	-1.7
3,943,896	+		GFF3907	0.14	+0.2
3,943,917	+		GFF3907	0.16	-0.1
3,943,921	-		GFF3907	0.16	-2.1
3,943,923	+		GFF3907	0.16	-0.9
3,943,931	-		GFF3907	0.17	+0.1
3,943,940	+		GFF3907	0.18	-2.1
3,943,960	-		GFF3907	0.19	-3.1
3,943,966	-		GFF3907	0.20	-0.5
3,943,973	-		GFF3907	0.21	+0.2
3,943,987	+		GFF3907	0.22	+0.8
3,943,988	+		GFF3907	0.22	-0.3
3,943,998	+		GFF3907	0.23	+0.8
3,944,005	+		GFF3907	0.23	-0.0
3,944,013	+		GFF3907	0.24	+0.8
3,944,014	-		GFF3907	0.24	+1.1
3,944,056	+		GFF3907	0.28	-0.3
3,944,058	-		GFF3907	0.28	-0.9
3,944,078	+		GFF3907	0.29	-0.8
3,944,078	-		GFF3907	0.29	+0.4
3,944,086	-		GFF3907	0.30	-2.7
3,944,092	-		GFF3907	0.31	-0.1
3,944,139	-		GFF3907	0.35	+0.3
3,944,142	+		GFF3907	0.35	-0.1
3,944,142	-		GFF3907	0.35	-0.6
3,944,171	+		GFF3907	0.37	-1.3
3,944,183	+		GFF3907	0.38	-0.1
3,944,205	+		GFF3907	0.40	+0.1
3,944,257	+		GFF3907	0.45	-0.5
3,944,265	-		GFF3907	0.45	+0.3
3,944,281	+		GFF3907	0.47	-1.0
3,944,289	-		GFF3907	0.47	-0.9
3,944,292	+		GFF3907	0.48	-0.9
3,944,311	-		GFF3907	0.49	-0.4
3,944,311	-		GFF3907	0.49	-0.2
3,944,323	-		GFF3907	0.50	-2.3
3,944,328	-		GFF3907	0.51	-0.1
3,944,348	+		GFF3907	0.53	-1.3
3,944,363	+		GFF3907	0.54	-3.4
3,944,382	-		GFF3907	0.55	-0.7
3,944,384	+		GFF3907	0.56	+0.2
3,944,384	+		GFF3907	0.56	-0.3
3,944,384	+		GFF3907	0.56	+0.6
3,944,384	+		GFF3907	0.56	-0.3
3,944,384	+		GFF3907	0.56	-1.7
3,944,384	+		GFF3907	0.56	-0.3
3,944,384	+		GFF3907	0.56	+0.7
3,944,384	+		GFF3907	0.56	+0.5
3,944,384	+		GFF3907	0.56	+0.2
3,944,384	+		GFF3907	0.56	+0.0
3,944,384	+		GFF3907	0.56	-0.6
3,944,384	+		GFF3907	0.56	+1.3
3,944,384	+		GFF3907	0.56	-0.8
3,944,384	+		GFF3907	0.56	-0.4
3,944,384	+		GFF3907	0.56	-1.0
3,944,384	+		GFF3907	0.56	+0.2
3,944,384	+		GFF3907	0.56	-0.6
3,944,384	+		GFF3907	0.56	-1.5
3,944,384	+		GFF3907	0.56	-0.2
3,944,384	+		GFF3907	0.56	+0.5
3,944,384	+		GFF3907	0.56	-1.2
3,944,384	+		GFF3907	0.56	-0.5
3,944,384	+		GFF3907	0.56	+0.2
3,944,384	+		GFF3907	0.56	+0.4
3,944,384	+		GFF3907	0.56	-0.6
3,944,384	+		GFF3907	0.56	-0.0
3,944,384	+		GFF3907	0.56	+0.5
3,944,384	+		GFF3907	0.56	-0.9
3,944,384	+		GFF3907	0.56	-0.3
3,944,384	+		GFF3907	0.56	-1.4
3,944,384	+		GFF3907	0.56	-1.0
3,944,392	-		GFF3907	0.56	-0.0
3,944,392	-		GFF3907	0.56	-1.3
3,944,392	-		GFF3907	0.56	+0.0
3,944,392	-		GFF3907	0.56	+0.8
3,944,392	-		GFF3907	0.56	+1.2
3,944,392	-		GFF3907	0.56	+0.8
3,944,392	-		GFF3907	0.56	-0.5
3,944,392	-		GFF3907	0.56	-1.8
3,944,392	-		GFF3907	0.56	+0.2
3,944,392	-		GFF3907	0.56	-0.8
3,944,392	-		GFF3907	0.56	-1.8
3,944,392	-		GFF3907	0.56	+0.1
3,944,392	-		GFF3907	0.56	-1.4
3,944,392	-		GFF3907	0.56	-0.6
3,944,392	-		GFF3907	0.56	-0.2
3,944,392	-		GFF3907	0.56	-0.8
3,944,392	-		GFF3907	0.56	-0.3
3,944,392	-		GFF3907	0.56	-0.5
3,944,392	-		GFF3907	0.56	-0.9
3,944,392	-		GFF3907	0.56	+0.2
3,944,392	-		GFF3907	0.56	+0.4
3,944,392	-		GFF3907	0.56	-2.0
3,944,392	-		GFF3907	0.56	-0.0
3,944,392	-		GFF3907	0.56	-1.0
3,944,392	-		GFF3907	0.56	-1.4
3,944,392	-		GFF3907	0.56	-0.8
3,944,392	-		GFF3907	0.56	-0.4
3,944,392	-		GFF3907	0.56	-0.3
3,944,392	-		GFF3907	0.56	-0.6
3,944,392	-		GFF3907	0.56	-1.9
3,944,392	-		GFF3907	0.56	-0.5
3,944,392	-		GFF3907	0.56	-0.3
3,944,392	-		GFF3907	0.56	-1.9
3,944,392	-		GFF3907	0.56	-1.8
3,944,392	-		GFF3907	0.56	-0.1
3,944,392	-		GFF3907	0.56	-0.5
3,944,392	-		GFF3907	0.56	-0.6
3,944,392	-		GFF3907	0.56	-1.5
3,944,392	-		GFF3907	0.56	+0.2
3,944,397	-		GFF3907	0.57	-0.1
3,944,411	+		GFF3907	0.58	+0.8
3,944,411	-		GFF3907	0.58	+0.6
3,944,416	-		GFF3907	0.58	+0.5
3,944,421	+		GFF3907	0.59	-0.2
3,944,430	+		GFF3907	0.60	-0.5
3,944,438	-		GFF3907	0.60	-0.6
3,944,443	-		GFF3907	0.61	-0.1
3,944,443	-		GFF3907	0.61	-1.8
3,944,453	-		GFF3907	0.61	-1.7
3,944,453	-		GFF3907	0.61	-0.2
3,944,453	-		GFF3907	0.61	+1.0
3,944,459	+		GFF3907	0.62	+0.3
3,944,459	+		GFF3907	0.62	+0.4
3,944,485	+		GFF3907	0.64	-0.5
3,944,511	-		GFF3907	0.66	+0.2
3,944,553	+		GFF3907	0.70	-0.5
3,944,553	+		GFF3907	0.70	+0.0
3,944,560	-		GFF3907	0.71	-1.2
3,944,560	-		GFF3907	0.71	+0.2
3,944,560	-		GFF3907	0.71	-0.3
3,944,561	-		GFF3907	0.71	+0.9
3,944,616	+		GFF3907	0.75	-1.9
3,944,621	+		GFF3907	0.76	+1.4
3,944,621	-		GFF3907	0.76	-0.8
3,944,637	+		GFF3907	0.77	-0.7
3,944,645	-		GFF3907	0.78	-0.5
3,944,645	-		GFF3907	0.78	-0.8