Strain Fitness in Sphingobium sp. HT1-2 around GFF3895

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,931,121	-		GFF3893	0.49	-0.8
3,931,148	+		GFF3893	0.51	-2.5
3,931,158	+		GFF3893	0.52	-0.8
3,931,179	+		GFF3893	0.54	+0.2
3,931,192	+		GFF3893	0.55	-1.1
3,931,197	+		GFF3893	0.55	-1.4
3,931,200	-		GFF3893	0.56	-0.4
3,931,200	-		GFF3893	0.56	+1.5
3,931,205	-		GFF3893	0.56	+0.7
3,931,264	+		GFF3893	0.61	-0.9
3,931,264	+		GFF3893	0.61	+0.8
3,931,272	-		GFF3893	0.62	-0.6
3,931,272	-		GFF3893	0.62	-1.7
3,931,272	-		GFF3893	0.62	-0.1
3,931,272	-		GFF3893	0.62	-1.8
3,931,272	-		GFF3893	0.62	-1.3
3,931,272	-		GFF3893	0.62	+0.2
3,931,272	-		GFF3893	0.62	-0.3
3,931,272	-		GFF3893	0.62	-2.5
3,931,274	+		GFF3893	0.62	-1.5
3,931,274	+		GFF3893	0.62	-0.8
3,931,292	-		GFF3893	0.64	-0.3
3,931,299	+		GFF3893	0.64	+0.2
3,931,307	-		GFF3893	0.65	-1.8
3,931,317	-		GFF3893	0.66	+0.4
3,931,343	+		GFF3893	0.68	-0.9
3,931,353	+		GFF3893	0.69	-1.0
3,931,384	-		GFF3893	0.72	-0.1
3,931,411	+		GFF3893	0.74	-1.2
3,931,416	-		GFF3893	0.75	+1.3
3,931,465	-		GFF3893	0.79	-0.3
3,931,509	+		GFF3893	0.83	-1.7
3,931,509	+		GFF3893	0.83	+0.5
3,931,514	+		GFF3893	0.83	-0.5
3,931,514	+		GFF3893	0.83	-0.4
3,931,517	-		GFF3893	0.84	+0.8
3,931,517	-		GFF3893	0.84	-1.4
3,931,522	+		GFF3893	0.84	+0.4
3,931,522	+		GFF3893	0.84	+0.5
3,931,522	-		GFF3893	0.84	+0.7
3,931,522	-		GFF3893	0.84	-1.6
3,931,530	-		GFF3893	0.85	-0.9
3,931,539	-		GFF3893	0.85	+0.7
3,931,547	-		GFF3893	0.86	-2.9
3,931,565	+		GFF3893	0.88	+0.4
3,931,574	+		GFF3893	0.89	+0.9
3,931,582	-		GFF3893	0.89	+1.2
3,931,609	+				+1.0
3,931,609	+				+0.6
3,931,609	+				+0.9
3,931,609	+				+0.4
3,931,612	-				+0.6
3,931,612	-				-1.0
3,931,612	-				-0.4
3,931,617	-				-1.2
3,931,617	-				-1.9
3,931,617	-				-0.3
3,931,633	+				+0.0
3,931,633	+				-0.6
3,931,633	+				+0.9
3,931,633	+				+0.5
3,931,641	-				-0.7
3,931,641	-				+1.1
3,931,641	-				-0.6
3,931,641	-				-1.1
3,931,641	-				-1.8
3,931,714	-				-0.6
3,931,729	+				-0.2
3,931,729	+				-0.2
3,931,729	+				+1.1
3,931,729	+				-2.6
3,931,737	-				+0.9
3,931,737	-				+0.6
3,931,780	+		GFF3894	0.22	-1.8
3,931,780	+		GFF3894	0.22	+0.4
3,931,780	+		GFF3894	0.22	+0.2
3,931,780	+		GFF3894	0.22	-1.8
3,931,788	-		GFF3894	0.25	+0.0
3,931,788	-		GFF3894	0.25	-1.9
3,931,806	+		GFF3894	0.30	-1.1
3,931,806	+		GFF3894	0.30	-0.3
3,931,806	+		GFF3894	0.30	-0.1
3,931,806	+		GFF3894	0.30	-0.9
3,931,809	-		GFF3894	0.31	-0.6
3,931,814	-		GFF3894	0.32	+1.1
3,931,836	+		GFF3894	0.39	-0.0
3,931,836	+		GFF3894	0.39	+1.4
3,931,836	+		GFF3894	0.39	-1.0
3,931,839	-		GFF3894	0.39	-0.2
3,931,844	-		GFF3894	0.41	+0.7
3,931,844	-		GFF3894	0.41	-0.9
3,931,846	+		GFF3894	0.41	+0.8
3,931,846	+		GFF3894	0.41	+1.5
3,931,847	+		GFF3894	0.42	-1.6
3,931,849	-		GFF3894	0.42	-1.2
3,931,849	-		GFF3894	0.42	+0.4
3,931,852	+		GFF3894	0.43	-0.7
3,931,854	-		GFF3894	0.44	-3.0
3,931,859	-		GFF3894	0.45	+1.2
3,931,882	+		GFF3894	0.52	-1.1
3,931,909	-		GFF3894	0.60	-0.1
3,931,914	-		GFF3894	0.61	+1.7
3,931,916	+		GFF3894	0.62	-0.6
3,931,938	+		GFF3894	0.68	+0.1
3,931,942	+		GFF3894	0.69	+0.4
3,931,946	+		GFF3894	0.70	-0.1
3,931,948	-		GFF3894	0.71	+0.7
3,931,957	+		GFF3894	0.74	-1.6
3,931,957	+		GFF3894	0.74	-0.2
3,931,957	+		GFF3894	0.74	-0.1
3,931,957	+		GFF3894	0.74	-1.5
3,931,957	+		GFF3894	0.74	-1.3
3,931,957	+		GFF3894	0.74	-1.3
3,931,957	+		GFF3894	0.74	+0.8
3,931,957	+		GFF3894	0.74	+0.2
3,931,957	+		GFF3894	0.74	-0.3
3,931,957	+		GFF3894	0.74	-0.5
3,931,957	+		GFF3894	0.74	+0.4
3,931,957	+		GFF3894	0.74	+0.2
3,931,965	-		GFF3894	0.76	+0.2
3,931,965	-		GFF3894	0.76	+1.4
3,931,965	-		GFF3894	0.76	+0.3
3,931,965	-		GFF3894	0.76	-0.1
3,931,965	-		GFF3894	0.76	-0.8
3,931,965	-		GFF3894	0.76	+1.4
3,931,965	-		GFF3894	0.76	-0.8
3,931,965	-		GFF3894	0.76	+0.1
3,931,965	-		GFF3894	0.76	-0.9
3,931,965	-		GFF3894	0.76	+1.0
3,931,965	-		GFF3894	0.76	-0.1
3,931,965	-		GFF3894	0.76	+0.7
3,931,965	-		GFF3894	0.76	+0.1
3,931,965	-		GFF3894	0.76	-0.1
3,931,965	-		GFF3894	0.76	-0.4
3,931,965	-		GFF3894	0.76	+0.5
3,931,965	-		GFF3894	0.76	-1.7
3,931,965	-		GFF3894	0.76	-1.3
3,931,965	-		GFF3894	0.76	-3.1
3,931,965	-		GFF3894	0.76	-0.6
3,931,965	-		GFF3894	0.76	-0.8
3,931,965	-		GFF3894	0.76	+0.7
3,931,965	-		GFF3894	0.76	+0.2
3,931,965	-		GFF3894	0.76	-1.6
3,931,965	-		GFF3894	0.76	+0.4
3,931,985	+		GFF3894	0.82	+0.1
3,931,985	+		GFF3894	0.82	-2.1
3,932,000	-		GFF3894	0.86	-1.0
3,932,012	+		GFF3894	0.90	+0.5
3,932,061	-				-2.1
3,932,061	-				+0.4
3,932,077	+				-1.5
3,932,089	+				-0.1
3,932,097	-				+0.4
3,932,099	+				-1.9
3,932,099	+				-0.1
3,932,158	-				+1.6
3,932,183	-				-0.5
3,932,264	+				+1.6
3,932,298	+		GFF3895	0.11	-0.1
3,932,298	+		GFF3895	0.11	-0.6
3,932,303	+		GFF3895	0.11	+0.4
3,932,303	+		GFF3895	0.11	-1.0
3,932,303	+		GFF3895	0.11	-0.1
3,932,303	+		GFF3895	0.11	-0.9
3,932,303	+		GFF3895	0.11	-0.3
3,932,306	-		GFF3895	0.11	-0.1
3,932,311	-		GFF3895	0.11	-1.7
3,932,311	-		GFF3895	0.11	-1.6
3,932,311	-		GFF3895	0.11	+0.2
3,932,311	-		GFF3895	0.11	+0.4
3,932,311	-		GFF3895	0.11	+0.2
3,932,311	-		GFF3895	0.11	-1.6
3,932,311	-		GFF3895	0.11	-1.2
3,932,311	-		GFF3895	0.11	+0.4
3,932,325	+		GFF3895	0.12	-1.8
3,932,329	-		GFF3895	0.13	+0.2
3,932,342	+		GFF3895	0.13	+0.4
3,932,344	-		GFF3895	0.13	-0.5
3,932,350	-		GFF3895	0.14	-0.3
3,932,352	+		GFF3895	0.14	+0.2
3,932,352	+		GFF3895	0.14	-2.0
3,932,355	-		GFF3895	0.14	-0.4
3,932,364	+		GFF3895	0.15	-1.8
3,932,364	-		GFF3895	0.15	-0.2
3,932,369	+		GFF3895	0.15	+0.6
3,932,389	-		GFF3895	0.16	-1.3
3,932,409	-		GFF3895	0.17	-0.0
3,932,431	-		GFF3895	0.19	+1.7
3,932,431	-		GFF3895	0.19	+0.4
3,932,441	+		GFF3895	0.19	+0.0
3,932,441	-		GFF3895	0.19	-1.6
3,932,449	-		GFF3895	0.20	-0.9
3,932,451	-		GFF3895	0.20	+0.4
3,932,472	-		GFF3895	0.21	-0.0
3,932,482	-		GFF3895	0.22	+0.6
3,932,493	-		GFF3895	0.22	+0.2
3,932,507	+		GFF3895	0.23	-0.5
3,932,507	+		GFF3895	0.23	-0.8
3,932,515	-		GFF3895	0.24	+0.1
3,932,536	-		GFF3895	0.25	-0.4
3,932,554	+		GFF3895	0.26	+0.2
3,932,554	+		GFF3895	0.26	-0.3
3,932,562	-		GFF3895	0.26	+0.4
3,932,593	-		GFF3895	0.28	-0.3
3,932,617	+		GFF3895	0.30	+0.4
3,932,627	+		GFF3895	0.30	-0.2
3,932,632	-		GFF3895	0.31	-1.0
3,932,660	+		GFF3895	0.32	-1.3
3,932,668	-		GFF3895	0.33	-0.3
3,932,699	+		GFF3895	0.35	+1.0
3,932,704	+		GFF3895	0.35	-0.8
3,932,707	-		GFF3895	0.35	-0.4
3,932,707	-		GFF3895	0.35	-1.8
3,932,712	-		GFF3895	0.35	-1.2
3,932,717	-		GFF3895	0.36	+0.1
3,932,724	+		GFF3895	0.36	-1.0
3,932,732	-		GFF3895	0.37	+0.7
3,932,732	-		GFF3895	0.37	-0.6
3,932,744	-		GFF3895	0.37	-1.9
3,932,764	-		GFF3895	0.39	-0.1
3,932,774	-		GFF3895	0.39	-0.3
3,932,786	+		GFF3895	0.40	+0.1
3,932,797	+		GFF3895	0.41	+0.8
3,932,802	+		GFF3895	0.41	-2.0
3,932,805	-		GFF3895	0.41	-2.1
3,932,814	-		GFF3895	0.42	-0.5
3,932,814	-		GFF3895	0.42	-0.2
3,932,824	-		GFF3895	0.42	+0.7
3,932,824	-		GFF3895	0.42	-0.1
3,932,824	-		GFF3895	0.42	-1.6
3,932,826	+		GFF3895	0.42	+0.4
3,932,826	+		GFF3895	0.42	-1.7
3,932,829	-		GFF3895	0.42	-1.2
3,932,829	-		GFF3895	0.42	-0.6
3,932,829	-		GFF3895	0.42	-0.9
3,932,830	+		GFF3895	0.42	+0.4
3,932,845	+		GFF3895	0.43	-1.5
3,932,846	+		GFF3895	0.43	-1.3
3,932,849	-		GFF3895	0.44	-0.7
3,932,853	-		GFF3895	0.44	-1.7
3,932,885	+		GFF3895	0.46	-1.5
3,932,888	-		GFF3895	0.46	-0.2
3,932,893	-		GFF3895	0.46	-0.1
3,932,893	-		GFF3895	0.46	+0.2
3,932,895	+		GFF3895	0.46	-0.9
3,932,895	+		GFF3895	0.46	+0.6
3,932,895	+		GFF3895	0.46	-1.4
3,932,895	+		GFF3895	0.46	-1.8
3,932,895	+		GFF3895	0.46	+0.2
3,932,895	+		GFF3895	0.46	-1.0
3,932,895	+		GFF3895	0.46	-0.2
3,932,898	-		GFF3895	0.47	+0.1
3,932,903	-		GFF3895	0.47	+0.1
3,932,903	-		GFF3895	0.47	-0.1
3,932,903	-		GFF3895	0.47	-1.6
3,932,903	-		GFF3895	0.47	+0.5
3,932,903	-		GFF3895	0.47	+0.1
3,932,912	+		GFF3895	0.47	+1.3
3,932,913	+		GFF3895	0.47	-0.8
3,932,932	+		GFF3895	0.49	-0.4
3,932,942	+		GFF3895	0.49	+0.7
3,932,942	+		GFF3895	0.49	+0.2
3,932,944	+		GFF3895	0.49	+0.2
3,932,944	+		GFF3895	0.49	+1.0
3,932,950	-		GFF3895	0.50	-1.8
3,932,950	-		GFF3895	0.50	+0.5
3,932,950	-		GFF3895	0.50	+0.6
3,932,950	-		GFF3895	0.50	+0.8
3,932,950	-		GFF3895	0.50	+1.6
3,932,951	+		GFF3895	0.50	-0.0
3,932,952	-		GFF3895	0.50	-0.3
3,932,979	-		GFF3895	0.51	-1.5
3,932,986	+		GFF3895	0.52	+0.7
3,932,987	-		GFF3895	0.52	+0.9
3,933,017	+		GFF3895	0.54	-0.9
3,933,030	+		GFF3895	0.54	+0.5
3,933,047	+		GFF3895	0.55	-2.8
3,933,088	+		GFF3895	0.58	-0.2
3,933,105	-		GFF3895	0.59	-1.5
3,933,106	-		GFF3895	0.59	-1.6
3,933,138	+		GFF3895	0.61	+0.1
3,933,146	-		GFF3895	0.61	-1.5
3,933,172	+		GFF3895	0.63	+0.3
3,933,196	+		GFF3895	0.64	-0.5
3,933,197	-		GFF3895	0.64	+0.3
3,933,242	+		GFF3895	0.67	-2.3
3,933,252	+		GFF3895	0.68	+0.1
3,933,260	-		GFF3895	0.68	-0.6
3,933,260	-		GFF3895	0.68	-1.1
3,933,260	-		GFF3895	0.68	-1.0
3,933,286	+		GFF3895	0.70	-2.6
3,933,286	+		GFF3895	0.70	-0.8
3,933,291	+		GFF3895	0.70	-0.6
3,933,294	-		GFF3895	0.70	-1.7
3,933,294	-		GFF3895	0.70	+1.4
3,933,294	-		GFF3895	0.70	+1.8
3,933,295	+		GFF3895	0.70	-0.3
3,933,296	+		GFF3895	0.70	-0.7
3,933,296	+		GFF3895	0.70	-1.8
3,933,304	-		GFF3895	0.71	-0.7
3,933,315	+		GFF3895	0.71	+1.3
3,933,323	-		GFF3895	0.72	-0.8
3,933,337	-		GFF3895	0.73	-0.7
3,933,375	-		GFF3895	0.75	+0.8
3,933,377	+		GFF3895	0.75	-0.6
3,933,380	-		GFF3895	0.75	+0.1
3,933,380	-		GFF3895	0.75	+0.8
3,933,385	-		GFF3895	0.76	-0.3
3,933,390	+		GFF3895	0.76	-2.6
3,933,390	-		GFF3895	0.76	-0.5
3,933,390	-		GFF3895	0.76	-1.1
3,933,392	-		GFF3895	0.76	+0.1
3,933,400	+		GFF3895	0.77	-0.4
3,933,403	-		GFF3895	0.77	+0.5
3,933,403	-		GFF3895	0.77	+0.4
3,933,403	-		GFF3895	0.77	-1.2
3,933,413	-		GFF3895	0.77	-0.2
3,933,419	+		GFF3895	0.78	+1.4
3,933,424	+		GFF3895	0.78	-0.6
3,933,452	-		GFF3895	0.80	+0.4
3,933,454	+		GFF3895	0.80	+0.5
3,933,454	+		GFF3895	0.80	+1.1
3,933,454	+		GFF3895	0.80	+0.2
3,933,454	+		GFF3895	0.80	-0.1
3,933,478	+		GFF3895	0.81	+0.4
3,933,478	+		GFF3895	0.81	-0.5
3,933,484	+		GFF3895	0.82	-1.3
3,933,485	+		GFF3895	0.82	-0.5
3,933,486	-		GFF3895	0.82	-0.3
3,933,486	-		GFF3895	0.82	-1.6
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