Strain Fitness in Sphingobium sp. HT1-2 around GFF3893

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,929,589	-		GFF3891	0.20	-0.9
3,929,616	+		GFF3891	0.26	+0.4
3,929,616	+		GFF3891	0.26	-0.1
3,929,616	+		GFF3891	0.26	-0.1
3,929,624	-		GFF3891	0.27	-0.7
3,929,624	-		GFF3891	0.27	+0.1
3,929,626	+		GFF3891	0.28	-0.2
3,929,637	-		GFF3891	0.30	-0.3
3,929,639	-		GFF3891	0.31	-0.0
3,929,653	+		GFF3891	0.34	-0.1
3,929,661	+		GFF3891	0.36	+0.0
3,929,661	-		GFF3891	0.36	-0.0
3,929,666	+		GFF3891	0.37	+0.3
3,929,666	+		GFF3891	0.37	-2.3
3,929,674	-		GFF3891	0.38	+0.3
3,929,674	-		GFF3891	0.38	-1.5
3,929,687	+		GFF3891	0.41	+0.2
3,929,695	+		GFF3891	0.43	-1.0
3,929,695	+		GFF3891	0.43	-0.1
3,929,702	+		GFF3891	0.45	-0.3
3,929,702	+		GFF3891	0.45	+0.4
3,929,703	-		GFF3891	0.45	-0.9
3,929,710	-		GFF3891	0.46	-0.2
3,929,710	-		GFF3891	0.46	-0.1
3,929,710	-		GFF3891	0.46	-2.1
3,929,710	-		GFF3891	0.46	-0.7
3,929,710	-		GFF3891	0.46	-2.1
3,929,712	+		GFF3891	0.47	-1.6
3,929,758	+		GFF3891	0.57	-2.5
3,929,794	-		GFF3891	0.65	-0.5
3,929,798	+		GFF3891	0.66	+1.3
3,929,800	-		GFF3891	0.66	-0.4
3,929,802	-		GFF3891	0.67	-1.8
3,929,804	-		GFF3891	0.67	+0.5
3,929,823	+		GFF3891	0.71	-1.2
3,929,838	+		GFF3891	0.75	+0.6
3,929,917	+				-0.9
3,929,917	+				-0.2
3,929,917	+				-0.4
3,929,922	+				-1.7
3,929,922	+				-0.6
3,929,922	+				+2.0
3,929,922	+				-1.7
3,929,922	+				-0.4
3,929,923	+				-0.1
3,929,928	+				+0.4
3,929,930	+				-1.7
3,929,930	-				+0.5
3,929,930	-				+0.8
3,929,930	-				-0.4
3,929,930	-				-1.9
3,929,941	+				+0.1
3,929,954	-				+0.9
3,929,957	-				-1.1
3,929,961	-				-0.2
3,929,977	-				+0.8
3,929,977	-				-1.0
3,929,977	-				-2.1
3,929,977	-				-0.6
3,929,977	-				-2.1
3,929,977	-				+0.2
3,930,004	+				+0.5
3,930,004	+				-0.3
3,930,005	+				-0.6
3,930,005	+				-0.2
3,930,027	+				-1.2
3,930,040	-				+0.2
3,930,086	+				-0.2
3,930,123	+				-0.6
3,930,123	+				-0.3
3,930,125	-				-0.5
3,930,164	+		GFF3892	0.10	+0.0
3,930,171	+		GFF3892	0.12	+0.2
3,930,174	+		GFF3892	0.13	+1.8
3,930,179	-		GFF3892	0.14	-1.7
3,930,179	-		GFF3892	0.14	-0.3
3,930,179	-		GFF3892	0.14	+0.8
3,930,179	-		GFF3892	0.14	+1.1
3,930,182	-		GFF3892	0.15	-0.5
3,930,209	+		GFF3892	0.22	-0.3
3,930,209	+		GFF3892	0.22	-1.5
3,930,209	+		GFF3892	0.22	-0.2
3,930,209	+		GFF3892	0.22	-0.8
3,930,209	+		GFF3892	0.22	+0.6
3,930,209	+		GFF3892	0.22	-0.3
3,930,209	+		GFF3892	0.22	-1.7
3,930,209	+		GFF3892	0.22	+0.7
3,930,209	+		GFF3892	0.22	+0.1
3,930,209	+		GFF3892	0.22	-0.7
3,930,209	+		GFF3892	0.22	-0.2
3,930,209	+		GFF3892	0.22	+0.2
3,930,209	+		GFF3892	0.22	-0.2
3,930,209	+		GFF3892	0.22	+0.2
3,930,209	+		GFF3892	0.22	-0.8
3,930,209	+		GFF3892	0.22	-2.4
3,930,209	+		GFF3892	0.22	+0.2
3,930,209	+		GFF3892	0.22	+1.3
3,930,209	+		GFF3892	0.22	-1.8
3,930,209	+		GFF3892	0.22	-0.3
3,930,209	+		GFF3892	0.22	+1.2
3,930,214	+		GFF3892	0.23	+0.4
3,930,214	+		GFF3892	0.23	-1.3
3,930,214	+		GFF3892	0.23	-0.2
3,930,217	-		GFF3892	0.24	+0.4
3,930,217	-		GFF3892	0.24	-1.8
3,930,217	-		GFF3892	0.24	-0.7
3,930,217	-		GFF3892	0.24	-0.9
3,930,217	-		GFF3892	0.24	+0.5
3,930,217	-		GFF3892	0.24	+0.3
3,930,217	-		GFF3892	0.24	-0.0
3,930,217	-		GFF3892	0.24	-1.3
3,930,217	-		GFF3892	0.24	-1.3
3,930,217	-		GFF3892	0.24	-1.1
3,930,217	-		GFF3892	0.24	-2.0
3,930,217	-		GFF3892	0.24	-0.6
3,930,217	-		GFF3892	0.24	+0.1
3,930,217	-		GFF3892	0.24	+1.5
3,930,217	-		GFF3892	0.24	-0.8
3,930,217	-		GFF3892	0.24	-2.0
3,930,217	-		GFF3892	0.24	-0.9
3,930,217	-		GFF3892	0.24	-0.1
3,930,217	-		GFF3892	0.24	-0.4
3,930,219	+		GFF3892	0.24	-0.3
3,930,219	+		GFF3892	0.24	-0.7
3,930,219	+		GFF3892	0.24	+0.7
3,930,219	+		GFF3892	0.24	-0.8
3,930,222	-		GFF3892	0.25	-0.3
3,930,222	-		GFF3892	0.25	+0.2
3,930,222	-		GFF3892	0.25	+0.4
3,930,224	+		GFF3892	0.26	+0.7
3,930,227	-		GFF3892	0.27	+0.7
3,930,227	-		GFF3892	0.27	-0.0
3,930,246	+		GFF3892	0.31	-0.5
3,930,246	+		GFF3892	0.31	-1.0
3,930,246	+		GFF3892	0.31	-0.5
3,930,251	+		GFF3892	0.33	-0.1
3,930,254	-		GFF3892	0.34	-2.8
3,930,254	-		GFF3892	0.34	+1.7
3,930,254	-		GFF3892	0.34	-1.6
3,930,254	-		GFF3892	0.34	+0.0
3,930,293	+		GFF3892	0.44	-1.8
3,930,328	+		GFF3892	0.53	-0.1
3,930,333	+		GFF3892	0.54	-0.6
3,930,333	+		GFF3892	0.54	+1.1
3,930,333	+		GFF3892	0.54	-0.2
3,930,333	+		GFF3892	0.54	-0.6
3,930,336	-		GFF3892	0.55	+1.0
3,930,341	-		GFF3892	0.56	-0.5
3,930,341	-		GFF3892	0.56	-2.3
3,930,341	-		GFF3892	0.56	-0.2
3,930,341	-		GFF3892	0.56	+1.0
3,930,341	-		GFF3892	0.56	+0.6
3,930,341	-		GFF3892	0.56	+0.3
3,930,348	+		GFF3892	0.58	-0.8
3,930,353	+		GFF3892	0.60	-0.1
3,930,356	-		GFF3892	0.60	-0.8
3,930,361	-		GFF3892	0.62	-0.1
3,930,372	-		GFF3892	0.65	-0.6
3,930,379	-		GFF3892	0.66	-1.1
3,930,402	+		GFF3892	0.72	-1.6
3,930,406	-		GFF3892	0.73	-0.5
3,930,411	+		GFF3892	0.75	-1.2
3,930,416	+		GFF3892	0.76	-0.1
3,930,416	+		GFF3892	0.76	+0.7
3,930,416	+		GFF3892	0.76	+0.3
3,930,416	+		GFF3892	0.76	-0.0
3,930,416	+		GFF3892	0.76	-1.5
3,930,416	+		GFF3892	0.76	-0.3
3,930,424	-		GFF3892	0.78	-0.3
3,930,424	-		GFF3892	0.78	-0.2
3,930,424	-		GFF3892	0.78	-0.8
3,930,424	-		GFF3892	0.78	+1.1
3,930,424	-		GFF3892	0.78	-0.3
3,930,424	-		GFF3892	0.78	+0.0
3,930,454	-		GFF3892	0.86	-0.3
3,930,466	-		GFF3892	0.89	+0.1
3,930,466	-		GFF3892	0.89	-0.9
3,930,466	-		GFF3892	0.89	-1.3
3,930,468	+		GFF3892	0.90	-0.8
3,930,469	+				+1.5
3,930,469	+				+0.5
3,930,473	+				+1.0
3,930,476	-				+0.7
3,930,477	-				+0.4
3,930,478	+				-1.9
3,930,481	-				+1.7
3,930,481	-				+0.0
3,930,483	+				-0.5
3,930,483	+				+0.2
3,930,486	-				-0.8
3,930,486	-				-0.1
3,930,486	-				-0.0
3,930,488	+				-0.2
3,930,488	+				+0.7
3,930,488	+				+0.8
3,930,488	+				-0.3
3,930,488	+				+0.2
3,930,488	+				+0.6
3,930,488	+				+0.2
3,930,488	+				+0.2
3,930,488	+				+0.2
3,930,488	+				-1.3
3,930,488	+				+0.7
3,930,489	+				-0.4
3,930,491	-				+0.1
3,930,491	-				-0.4
3,930,496	-				-0.3
3,930,496	-				+0.2
3,930,496	-				-0.8
3,930,496	-				+0.2
3,930,496	-				-0.8
3,930,496	-				-0.1
3,930,496	-				-0.1
3,930,496	-				-1.9
3,930,496	-				-1.9
3,930,496	-				-0.3
3,930,508	+				-0.5
3,930,508	+				-1.5
3,930,509	-				+0.4
3,930,527	+				-0.8
3,930,527	+				-0.4
3,930,530	-				-0.6
3,930,535	-				+1.2
3,930,535	-				-0.1
3,930,535	-				+0.3
3,930,556	+				-1.3
3,930,563	+				+0.7
3,930,571	-				-1.3
3,930,638	-				+0.7
3,930,653	+				-1.4
3,930,656	+				-0.2
3,930,656	+				+0.6
3,930,656	+				+1.2
3,930,661	+				-0.4
3,930,664	-				-2.1
3,930,666	+				+0.6
3,930,671	+				-2.5
3,930,674	-				-0.4
3,930,674	-				+0.1
3,930,674	-				-0.7
3,930,674	-				+0.1
3,930,674	-				+0.2
3,930,691	+		GFF3893	0.11	-1.3
3,930,696	+		GFF3893	0.11	-3.3
3,930,701	+		GFF3893	0.12	-1.1
3,930,701	+		GFF3893	0.12	-0.5
3,930,701	+		GFF3893	0.12	-1.6
3,930,703	+		GFF3893	0.12	-1.0
3,930,703	+		GFF3893	0.12	+0.7
3,930,703	+		GFF3893	0.12	-0.8
3,930,703	+		GFF3893	0.12	-1.8
3,930,703	+		GFF3893	0.12	+1.6
3,930,703	+		GFF3893	0.12	+0.0
3,930,703	+		GFF3893	0.12	+0.6
3,930,703	+		GFF3893	0.12	+0.5
3,930,703	+		GFF3893	0.12	-0.6
3,930,703	+		GFF3893	0.12	+0.5
3,930,703	+		GFF3893	0.12	+1.1
3,930,703	+		GFF3893	0.12	-0.7
3,930,703	+		GFF3893	0.12	+0.3
3,930,703	+		GFF3893	0.12	+1.6
3,930,703	+		GFF3893	0.12	+0.4
3,930,703	+		GFF3893	0.12	-0.0
3,930,703	+		GFF3893	0.12	-0.1
3,930,703	+		GFF3893	0.12	-2.1
3,930,703	+		GFF3893	0.12	-0.4
3,930,703	+		GFF3893	0.12	+0.9
3,930,703	+		GFF3893	0.12	-0.7
3,930,703	+		GFF3893	0.12	-0.8
3,930,703	+		GFF3893	0.12	-0.2
3,930,703	+		GFF3893	0.12	-1.5
3,930,703	+		GFF3893	0.12	+0.3
3,930,703	+		GFF3893	0.12	+0.6
3,930,703	+		GFF3893	0.12	+0.1
3,930,703	+		GFF3893	0.12	-0.6
3,930,704	-		GFF3893	0.12	-1.0
3,930,704	-		GFF3893	0.12	-0.8
3,930,708	-		GFF3893	0.12	-1.2
3,930,708	-		GFF3893	0.12	+1.0
3,930,709	-		GFF3893	0.12	+2.1
3,930,711	-		GFF3893	0.13	+0.4
3,930,711	-		GFF3893	0.13	+0.3
3,930,711	-		GFF3893	0.13	+0.0
3,930,711	-		GFF3893	0.13	-0.6
3,930,711	-		GFF3893	0.13	-0.8
3,930,711	-		GFF3893	0.13	-0.3
3,930,711	-		GFF3893	0.13	-0.2
3,930,711	-		GFF3893	0.13	+0.8
3,930,711	-		GFF3893	0.13	+1.2
3,930,711	-		GFF3893	0.13	-0.0
3,930,711	-		GFF3893	0.13	-2.1
3,930,711	-		GFF3893	0.13	-0.4
3,930,711	-		GFF3893	0.13	-0.6
3,930,711	-		GFF3893	0.13	-1.0
3,930,711	-		GFF3893	0.13	-0.7
3,930,720	+		GFF3893	0.13	-0.8
3,930,720	+		GFF3893	0.13	+0.2
3,930,728	-		GFF3893	0.14	+1.1
3,930,750	+		GFF3893	0.16	-0.3
3,930,755	+		GFF3893	0.17	-1.5
3,930,755	+		GFF3893	0.17	-0.9
3,930,755	+		GFF3893	0.17	+1.1
3,930,758	-		GFF3893	0.17	+0.3
3,930,763	-		GFF3893	0.17	-2.0
3,930,781	+		GFF3893	0.19	+0.3
3,930,817	-		GFF3893	0.22	-0.9
3,930,853	+		GFF3893	0.25	-0.1
3,930,870	-		GFF3893	0.27	-0.6
3,930,888	+		GFF3893	0.28	-0.5
3,930,901	-		GFF3893	0.29	+1.7
3,930,933	+		GFF3893	0.32	-2.0
3,930,950	+		GFF3893	0.34	-1.6
3,930,950	+		GFF3893	0.34	-0.6
3,930,950	+		GFF3893	0.34	-1.2
3,930,950	+		GFF3893	0.34	-1.8
3,930,950	+		GFF3893	0.34	+0.0
3,930,952	+		GFF3893	0.34	+0.2
3,930,952	+		GFF3893	0.34	-0.2
3,930,952	+		GFF3893	0.34	-0.6
3,930,952	+		GFF3893	0.34	-1.3
3,930,955	+		GFF3893	0.34	-0.6
3,930,958	-		GFF3893	0.34	-0.1
3,930,958	-		GFF3893	0.34	-2.5
3,930,958	-		GFF3893	0.34	+0.0
3,930,958	-		GFF3893	0.34	-0.1
3,930,958	-		GFF3893	0.34	-0.6
3,930,960	-		GFF3893	0.35	-2.6
3,930,960	-		GFF3893	0.35	+0.3
3,930,960	-		GFF3893	0.35	-0.0
3,930,960	-		GFF3893	0.35	-0.8
3,930,974	+		GFF3893	0.36	-0.8
3,930,981	+		GFF3893	0.36	+0.4
3,931,012	+		GFF3893	0.39	+0.5
3,931,018	+		GFF3893	0.40	-1.7
3,931,018	+		GFF3893	0.40	-0.3
3,931,018	+		GFF3893	0.40	-0.3
3,931,019	+		GFF3893	0.40	+0.2
3,931,019	-		GFF3893	0.40	-2.1
3,931,020	+		GFF3893	0.40	+0.0
3,931,020	+		GFF3893	0.40	-0.4
3,931,020	-		GFF3893	0.40	-1.7
3,931,020	-		GFF3893	0.40	+0.4
3,931,020	-		GFF3893	0.40	+0.0
3,931,026	-		GFF3893	0.40	+0.1
3,931,026	-		GFF3893	0.40	+0.1
3,931,026	-		GFF3893	0.40	-2.1
3,931,026	-		GFF3893	0.40	-0.7
3,931,026	-		GFF3893	0.40	-0.3
3,931,026	-		GFF3893	0.40	+2.1
3,931,077	+		GFF3893	0.45	+0.9
3,931,081	-		GFF3893	0.45	+1.1
3,931,083	+		GFF3893	0.45	+0.3
3,931,085	-		GFF3893	0.46	-1.2
3,931,095	+		GFF3893	0.46	-1.1
3,931,096	+		GFF3893	0.47	+1.6
3,931,096	+		GFF3893	0.47	+0.8
3,931,096	+		GFF3893	0.47	+0.4
3,931,096	-		GFF3893	0.47	-1.5
3,931,096	-		GFF3893	0.47	-0.3
3,931,113	+		GFF3893	0.48	-1.2
3,931,121	-		GFF3893	0.49	-0.8
3,931,148	+		GFF3893	0.51	-2.5
3,931,158	+		GFF3893	0.52	-0.8
3,931,179	+		GFF3893	0.54	+0.2
3,931,192	+		GFF3893	0.55	-1.1
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3,931,609	+				+0.9
3,931,609	+				+0.4
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3,931,612	-				-0.4
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3,931,617	-				-1.9
3,931,617	-				-0.3
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3,931,633	+				-0.6
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3,931,641	-				+1.1
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3,931,641	-				-1.1
3,931,641	-				-1.8
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3,931,729	+				-0.2
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3,932,061	-				+0.4
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