Strain Fitness in Sphingobium sp. HT1-2 around GFF3878

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,917,215	+		GFF3876	0.73	-1.0
3,917,278	+		GFF3876	0.78	-1.7
3,917,278	+		GFF3876	0.78	+0.7
3,917,286	-		GFF3876	0.79	+1.7
3,917,328	-		GFF3876	0.82	+0.7
3,917,338	-		GFF3876	0.83	-0.7
3,917,369	-		GFF3876	0.85	-2.0
3,917,428	+		GFF3876	0.90	-0.3
3,917,473	+				-0.7
3,917,473	+				+2.1
3,917,481	-				+0.8
3,917,481	-				+0.2
3,917,481	-				+0.3
3,917,483	+				-1.1
3,917,483	+				-0.7
3,917,483	+				-0.5
3,917,486	-				-0.3
3,917,515	+				-1.3
3,917,515	+				-0.3
3,917,515	+				+1.2
3,917,523	-				+0.5
3,917,527	+				+0.1
3,917,531	+				-0.6
3,917,531	+				+0.7
3,917,535	+				-0.3
3,917,537	+				-0.3
3,917,537	+				-1.8
3,917,539	-				-1.3
3,917,541	+				+0.2
3,917,543	-				-1.6
3,917,552	+				+0.6
3,917,560	-				-0.6
3,917,560	-				-1.0
3,917,562	+				+1.2
3,917,562	+				-1.3
3,917,571	-				-2.7
3,917,572	+				+0.2
3,917,605	+				+1.3
3,917,644	-				-2.7
3,917,649	-				-0.7
3,917,666	-				-0.2
3,917,672	+				+0.2
3,917,678	+				-2.5
3,917,683	+				+1.5
3,917,686	-				-1.7
3,917,686	-				+0.4
3,917,688	+				+0.3
3,917,688	-				+0.8
3,917,701	-				+1.5
3,917,701	-				+0.2
3,917,710	+				-1.6
3,917,780	+				-0.1
3,917,787	+				-0.3
3,917,788	-				-0.7
3,917,788	-				-0.8
3,917,798	+				-1.2
3,917,799	+				+0.1
3,917,807	-				-1.7
3,917,811	+				-1.0
3,917,819	-				-0.6
3,917,825	-				-2.4
3,917,845	-		GFF3877	0.16	-0.2
3,917,863	+		GFF3877	0.22	-0.4
3,917,895	+		GFF3877	0.32	-1.8
3,917,905	+		GFF3877	0.35	+0.5
3,917,908	-		GFF3877	0.36	-0.5
3,917,908	-		GFF3877	0.36	-0.3
3,917,913	-		GFF3877	0.38	-0.5
3,917,931	-		GFF3877	0.44	-1.3
3,917,939	+		GFF3877	0.46	+0.3
3,917,953	+		GFF3877	0.51	-1.5
3,917,957	-		GFF3877	0.52	+0.7
3,917,968	+		GFF3877	0.56	-0.5
3,917,969	+		GFF3877	0.56	-1.6
3,917,972	-		GFF3877	0.57	-3.4
3,917,972	-		GFF3877	0.57	-0.5
3,917,977	-		GFF3877	0.59	+0.8
3,917,977	-		GFF3877	0.59	-0.1
3,917,985	+		GFF3877	0.61	-0.3
3,917,985	+		GFF3877	0.61	+0.0
3,917,985	+		GFF3877	0.61	-0.1
3,917,985	+		GFF3877	0.61	-0.7
3,917,985	+		GFF3877	0.61	+0.7
3,917,985	+		GFF3877	0.61	+0.8
3,917,985	+		GFF3877	0.61	-0.6
3,917,985	+		GFF3877	0.61	+0.2
3,917,985	+		GFF3877	0.61	+1.1
3,917,985	+		GFF3877	0.61	-2.5
3,917,985	+		GFF3877	0.61	+0.8
3,917,985	+		GFF3877	0.61	+1.2
3,917,985	+		GFF3877	0.61	-2.0
3,917,985	+		GFF3877	0.61	-0.0
3,917,985	+		GFF3877	0.61	+0.2
3,917,985	+		GFF3877	0.61	-0.3
3,917,985	+		GFF3877	0.61	-2.2
3,917,985	+		GFF3877	0.61	-1.5
3,917,985	+		GFF3877	0.61	+1.2
3,917,985	+		GFF3877	0.61	-0.2
3,917,993	-		GFF3877	0.64	-0.0
3,917,993	-		GFF3877	0.64	+1.1
3,917,993	-		GFF3877	0.64	-0.2
3,917,993	-		GFF3877	0.64	-0.5
3,917,993	-		GFF3877	0.64	-0.5
3,917,993	-		GFF3877	0.64	-0.0
3,917,993	-		GFF3877	0.64	-0.9
3,917,993	-		GFF3877	0.64	-0.4
3,917,993	-		GFF3877	0.64	+0.6
3,918,009	+		GFF3877	0.69	-0.0
3,918,014	+		GFF3877	0.71	+0.2
3,918,014	+		GFF3877	0.71	-0.8
3,918,014	+		GFF3877	0.71	-0.7
3,918,022	-		GFF3877	0.73	-0.2
3,918,022	-		GFF3877	0.73	-0.2
3,918,043	-		GFF3877	0.80	-0.3
3,918,049	+		GFF3877	0.82	-0.7
3,918,050	+		GFF3877	0.82	+0.2
3,918,057	-		GFF3877	0.84	-0.3
3,918,059	+		GFF3877	0.85	-0.0
3,918,059	+		GFF3877	0.85	+0.3
3,918,064	+		GFF3877	0.87	-1.6
3,918,072	-		GFF3877	0.89	-0.1
3,918,077	+				-0.4
3,918,077	+				-0.1
3,918,079	-				+0.2
3,918,119	+				-1.1
3,918,122	-				-1.5
3,918,122	-				-1.2
3,918,132	-				-1.8
3,918,132	-				+0.2
3,918,137	+				-0.1
3,918,137	+				-1.7
3,918,140	-				+0.1
3,918,145	-				-0.1
3,918,164	+				-0.7
3,918,187	-				+0.1
3,918,206	+				-1.3
3,918,206	+				-0.1
3,918,206	+				-0.3
3,918,206	+				-0.2
3,918,206	-				-0.7
3,918,206	-				+0.6
3,918,206	-				+0.1
3,918,211	+				+0.1
3,918,211	+				+0.2
3,918,211	-				-1.3
3,918,214	-				+0.3
3,918,216	+				+0.1
3,918,216	+				+0.6
3,918,216	+				-0.2
3,918,216	+				+0.4
3,918,216	+				-1.1
3,918,224	-				-1.0
3,918,224	-				-1.3
3,918,224	-				+0.3
3,918,224	-				-0.6
3,918,233	+				-0.7
3,918,271	+		GFF3878	0.12	-0.0
3,918,281	+		GFF3878	0.14	+0.1
3,918,362	-		GFF3878	0.24	-1.5
3,918,387	+		GFF3878	0.28	+1.4
3,918,388	+		GFF3878	0.28	+0.6
3,918,408	+		GFF3878	0.30	+0.7
3,918,431	+		GFF3878	0.33	-0.6
3,918,440	-		GFF3878	0.35	+0.1
3,918,459	+		GFF3878	0.37	-1.7
3,918,506	-		GFF3878	0.43	-0.3
3,918,545	-		GFF3878	0.49	+0.2
3,918,557	+		GFF3878	0.50	-0.6
3,918,565	-		GFF3878	0.51	-0.1
3,918,565	-		GFF3878	0.51	-2.9
3,918,567	+		GFF3878	0.52	-2.3
3,918,567	+		GFF3878	0.52	+0.4
3,918,575	-		GFF3878	0.53	-0.4
3,918,575	-		GFF3878	0.53	-0.1
3,918,575	-		GFF3878	0.53	+0.4
3,918,586	+		GFF3878	0.54	-0.3
3,918,594	-		GFF3878	0.55	-3.1
3,918,594	-		GFF3878	0.55	-0.8
3,918,613	+		GFF3878	0.58	+0.5
3,918,621	-		GFF3878	0.59	+0.4
3,918,621	-		GFF3878	0.59	-1.1
3,918,621	-		GFF3878	0.59	-1.8
3,918,635	+		GFF3878	0.61	-1.1
3,918,639	+		GFF3878	0.61	+0.6
3,918,639	+		GFF3878	0.61	-0.8
3,918,639	+		GFF3878	0.61	-2.0
3,918,639	+		GFF3878	0.61	+1.2
3,918,643	-		GFF3878	0.62	-1.7
3,918,647	-		GFF3878	0.62	+0.4
3,918,647	-		GFF3878	0.62	-0.2
3,918,647	-		GFF3878	0.62	+0.2
3,918,665	-		GFF3878	0.65	+0.2
3,918,671	+		GFF3878	0.65	-0.9
3,918,679	-		GFF3878	0.66	-1.2
3,918,679	-		GFF3878	0.66	+0.8
3,918,693	-		GFF3878	0.68	+0.6
3,918,694	+		GFF3878	0.68	+0.5
3,918,694	+		GFF3878	0.68	-0.8
3,918,702	-		GFF3878	0.69	+0.4
3,918,702	-		GFF3878	0.69	-1.5
3,918,703	-		GFF3878	0.70	-0.2
3,918,703	-		GFF3878	0.70	-0.7
3,918,718	+		GFF3878	0.72	-1.1
3,918,726	-		GFF3878	0.73	-0.7
3,918,737	+		GFF3878	0.74	-1.9
3,918,766	-		GFF3878	0.78	-0.1
3,918,800	+		GFF3878	0.82	-2.0
3,918,818	-		GFF3878	0.85	-1.3
3,918,821	+		GFF3878	0.85	-0.6
3,918,837	+		GFF3878	0.87	+1.4
3,918,837	+		GFF3878	0.87	+0.8
3,918,837	+		GFF3878	0.87	+1.1
3,918,837	+		GFF3878	0.87	-0.2
3,918,845	-		GFF3878	0.88	-0.8
3,918,845	-		GFF3878	0.88	-0.8
3,918,845	-		GFF3878	0.88	-1.9
3,918,850	+		GFF3878	0.89	+0.3
3,918,858	-				-1.4
3,918,862	-				-1.2
3,918,866	+				+0.2
3,918,893	+				-0.3
3,918,893	+				-0.2
3,918,952	+				-1.8
3,918,953	+				-1.1
3,918,965	-				+0.5
3,918,966	-				-1.1
3,918,966	-				-0.5
3,918,967	-				-0.0
3,918,991	-				+0.8
3,918,993	-				+0.1
3,919,009	-				-0.2
3,919,020	+				-2.2
3,919,028	-				-0.6
3,919,033	+				-0.1
3,919,041	-				-0.2
3,919,044	-				-0.1
3,919,070	+				-0.1
3,919,070	+				+1.4
3,919,116	+				+0.1
3,919,116	+				-0.6
3,919,116	+				-2.7
3,919,120	+				-0.3
3,919,124	-				-0.5
3,919,129	-				-0.7
3,919,189	+				+0.7
3,919,202	+				-1.7
3,919,202	-				+0.5
3,919,226	+		GFF3879	0.10	-1.3
3,919,226	+		GFF3879	0.10	+0.7
3,919,234	-		GFF3879	0.11	-1.0
3,919,239	+		GFF3879	0.11	-0.5
3,919,239	+		GFF3879	0.11	-0.7
3,919,239	+		GFF3879	0.11	-2.5
3,919,239	+		GFF3879	0.11	+0.3
3,919,242	-		GFF3879	0.11	-0.8
3,919,242	-		GFF3879	0.11	+0.2
3,919,247	-		GFF3879	0.11	+0.7
3,919,247	-		GFF3879	0.11	+0.9
3,919,247	-		GFF3879	0.11	+0.2
3,919,247	-		GFF3879	0.11	-0.8
3,919,247	-		GFF3879	0.11	+0.2
3,919,247	-		GFF3879	0.11	-2.0
3,919,247	-		GFF3879	0.11	-1.5
3,919,262	-		GFF3879	0.12	-0.5
3,919,262	-		GFF3879	0.12	+0.2
3,919,290	-		GFF3879	0.13	-0.9
3,919,300	-		GFF3879	0.13	+0.1
3,919,363	+		GFF3879	0.15	+0.0
3,919,363	+		GFF3879	0.15	+1.1
3,919,363	+		GFF3879	0.15	-1.0
3,919,363	+		GFF3879	0.15	+0.7
3,919,364	-		GFF3879	0.15	-1.7
3,919,364	-		GFF3879	0.15	-1.2
3,919,370	+		GFF3879	0.16	-0.7
3,919,371	-		GFF3879	0.16	-0.7
3,919,371	-		GFF3879	0.16	+1.1
3,919,378	-		GFF3879	0.16	-0.3
3,919,383	-		GFF3879	0.16	-1.5
3,919,399	+		GFF3879	0.17	-1.6
3,919,473	-		GFF3879	0.19	-1.7
3,919,473	-		GFF3879	0.19	-0.4
3,919,473	-		GFF3879	0.19	-1.3
3,919,473	-		GFF3879	0.19	-2.8
3,919,489	+		GFF3879	0.20	+0.2
3,919,495	-		GFF3879	0.20	-2.8
3,919,497	-		GFF3879	0.20	+1.1
3,919,497	-		GFF3879	0.20	+1.2
3,919,497	-		GFF3879	0.20	-2.0
3,919,499	+		GFF3879	0.20	-0.2
3,919,499	+		GFF3879	0.20	+1.2
3,919,499	+		GFF3879	0.20	-2.9
3,919,499	+		GFF3879	0.20	-0.8
3,919,505	-		GFF3879	0.20	+0.8
3,919,507	-		GFF3879	0.21	-0.5
3,919,507	-		GFF3879	0.21	+0.8
3,919,507	-		GFF3879	0.21	+0.8
3,919,512	+		GFF3879	0.21	+0.4
3,919,512	+		GFF3879	0.21	+0.9
3,919,512	+		GFF3879	0.21	+0.6
3,919,512	+		GFF3879	0.21	-2.1
3,919,533	+		GFF3879	0.21	-0.3
3,919,556	-		GFF3879	0.22	+0.5
3,919,597	+		GFF3879	0.24	+1.4
3,919,597	+		GFF3879	0.24	-1.8
3,919,601	-		GFF3879	0.24	-0.3
3,919,619	-		GFF3879	0.25	+1.0
3,919,640	+		GFF3879	0.25	+0.5
3,919,645	+		GFF3879	0.26	-0.7
3,919,648	-		GFF3879	0.26	-0.3
3,919,648	-		GFF3879	0.26	+1.5
3,919,653	-		GFF3879	0.26	+0.3
3,919,661	-		GFF3879	0.26	-0.5
3,919,663	-		GFF3879	0.26	+0.6
3,919,666	+		GFF3879	0.26	+0.7
3,919,692	+		GFF3879	0.27	+1.5
3,919,692	+		GFF3879	0.27	-0.5
3,919,694	+		GFF3879	0.27	-0.8
3,919,700	-		GFF3879	0.28	-0.0
3,919,703	+		GFF3879	0.28	-1.5
3,919,721	-		GFF3879	0.28	+0.6
3,919,721	-		GFF3879	0.28	+0.2
3,919,721	-		GFF3879	0.28	+0.7
3,919,721	-		GFF3879	0.28	-0.9
3,919,737	-		GFF3879	0.29	-1.6
3,919,738	+		GFF3879	0.29	-0.6
3,919,748	+		GFF3879	0.29	-0.0
3,919,784	+		GFF3879	0.31	-0.5
3,919,789	-		GFF3879	0.31	-0.4
3,919,789	-		GFF3879	0.31	-0.4
3,919,823	+		GFF3879	0.32	-1.7
3,919,823	+		GFF3879	0.32	+0.3
3,919,823	+		GFF3879	0.32	-0.9
3,919,823	+		GFF3879	0.32	+0.1
3,919,823	+		GFF3879	0.32	+0.2
3,919,831	-		GFF3879	0.32	-1.0
3,919,831	-		GFF3879	0.32	-1.3
3,919,831	-		GFF3879	0.32	-1.1
3,919,831	-		GFF3879	0.32	+0.5
3,919,836	-		GFF3879	0.33	+0.9
3,919,836	-		GFF3879	0.33	-0.8
3,919,841	+		GFF3879	0.33	-0.8
3,919,854	-		GFF3879	0.33	-1.4
3,919,863	+		GFF3879	0.34	-0.3
3,919,863	+		GFF3879	0.34	-0.2
3,919,863	+		GFF3879	0.34	+1.4
3,919,863	+		GFF3879	0.34	-0.7
3,919,871	-		GFF3879	0.34	-2.6
3,919,871	-		GFF3879	0.34	+0.6
3,919,871	-		GFF3879	0.34	-0.1
3,919,901	+		GFF3879	0.35	+0.6
3,919,917	+		GFF3879	0.36	-0.4