Strain Fitness in Sphingobium sp. HT1-2 around GFF3876

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,915,287	+				-0.5
3,915,287	+				-0.2
3,915,287	+				-1.8
3,915,287	+				-0.4
3,915,287	+				-0.1
3,915,287	+				-1.3
3,915,295	-				+0.0
3,915,295	-				+0.0
3,915,295	-				-0.3
3,915,295	-				+1.0
3,915,295	-				-0.1
3,915,295	-				-1.4
3,915,295	-				+0.3
3,915,295	-				-0.0
3,915,295	-				+0.9
3,915,295	-				-2.2
3,915,295	-				+1.3
3,915,295	-				-0.9
3,915,295	-				-1.0
3,915,295	-				+0.4
3,915,295	-				-0.8
3,915,339	-				-1.0
3,915,418	+				-0.5
3,915,423	+				-0.5
3,915,426	-				-0.4
3,915,428	+				+0.2
3,915,428	+				-0.8
3,915,428	+				-0.3
3,915,428	+				+0.1
3,915,428	+				-0.3
3,915,428	+				+0.3
3,915,428	+				+0.1
3,915,428	+				-0.1
3,915,428	+				-1.7
3,915,428	+				+1.2
3,915,428	+				+0.9
3,915,428	+				-1.5
3,915,428	+				-1.1
3,915,428	+				-1.2
3,915,428	+				+1.4
3,915,428	+				+0.0
3,915,428	+				-0.0
3,915,428	+				+0.1
3,915,428	+				+1.1
3,915,428	+				-1.8
3,915,428	+				-3.0
3,915,428	+				+0.8
3,915,428	+				-0.2
3,915,428	+				-1.0
3,915,428	+				-0.2
3,915,428	+				-0.4
3,915,428	+				-0.2
3,915,428	+				-0.8
3,915,428	+				-0.9
3,915,428	+				-1.3
3,915,428	+				+0.3
3,915,428	+				-1.6
3,915,428	+				-0.9
3,915,428	+				-1.3
3,915,428	+				-0.4
3,915,428	+				-1.0
3,915,428	+				-1.2
3,915,428	+				-0.6
3,915,465	+				-0.9
3,915,465	+				-0.5
3,915,473	-				-0.6
3,915,477	+				+1.2
3,915,477	+				+0.4
3,915,477	+				-1.6
3,915,477	+				+0.3
3,915,485	-				-0.3
3,915,485	-				+0.6
3,915,487	+				-0.1
3,915,487	+				+0.3
3,915,507	+				-1.2
3,915,522	+				+1.1
3,915,525	-				-0.7
3,915,530	-				-1.8
3,915,532	+				-1.2
3,915,656	-				-0.3
3,915,892	+				-2.1
3,915,939	-				+0.7
3,915,994	-				+0.1
3,916,044	+				+1.1
3,916,065	-				-2.1
3,916,085	+				+0.9
3,916,085	+				-0.5
3,916,090	+				-0.6
3,916,091	-				-0.3
3,916,098	-				-1.3
3,916,098	-				-0.9
3,916,098	-				-0.7
3,916,117	+				+1.1
3,916,117	+				+0.1
3,916,130	-				-0.5
3,916,135	+				-0.4
3,916,135	+				-0.7
3,916,135	+				-1.2
3,916,143	-				-2.7
3,916,161	-				+0.8
3,916,161	-				-0.3
3,916,176	+				+0.8
3,916,176	+				+1.4
3,916,178	-				+0.7
3,916,178	-				-0.4
3,916,178	-				+1.4
3,916,208	+				-0.3
3,916,217	+				+0.8
3,916,225	-				-0.4
3,916,238	+				-0.5
3,916,238	+				+1.0
3,916,252	+				+0.1
3,916,266	+				+1.2
3,916,266	+				+1.2
3,916,266	+				-0.1
3,916,266	+				-0.3
3,916,266	+				-0.3
3,916,266	+				-1.9
3,916,269	-				+0.4
3,916,269	-				-0.1
3,916,274	-				-0.2
3,916,274	-				-0.0
3,916,274	-				-0.1
3,916,274	-				-0.1
3,916,274	-				-0.9
3,916,274	-				+1.1
3,916,274	-				+0.3
3,916,283	+				+1.3
3,916,283	+				+0.1
3,916,285	+				+0.2
3,916,291	-				-0.1
3,916,291	-				-0.2
3,916,291	-				-1.6
3,916,293	-				-0.5
3,916,296	-				-1.1
3,916,318	-				-1.0
3,916,318	-				-1.9
3,916,320	-				-0.7
3,916,325	-				+0.2
3,916,342	-				-1.3
3,916,353	+				+0.8
3,916,370	+				+0.2
3,916,380	+				-1.5
3,916,384	+				-0.2
3,916,388	-				-0.3
3,916,394	+				+0.3
3,916,402	-				-0.2
3,916,407	-				-0.5
3,916,453	-		GFF3876	0.13	+0.4
3,916,455	+		GFF3876	0.13	-1.0
3,916,468	-		GFF3876	0.14	-0.1
3,916,468	-		GFF3876	0.14	-1.1
3,916,473	-		GFF3876	0.15	+0.8
3,916,473	-		GFF3876	0.15	+0.7
3,916,505	+		GFF3876	0.17	+1.8
3,916,505	+		GFF3876	0.17	+1.1
3,916,505	+		GFF3876	0.17	-2.3
3,916,513	-		GFF3876	0.18	-0.5
3,916,513	-		GFF3876	0.18	+0.3
3,916,541	-		GFF3876	0.20	-0.5
3,916,561	+		GFF3876	0.22	-0.0
3,916,576	+		GFF3876	0.23	-1.5
3,916,584	+		GFF3876	0.24	+0.4
3,916,584	-		GFF3876	0.24	+0.4
3,916,591	+		GFF3876	0.24	+0.8
3,916,592	-		GFF3876	0.24	-2.2
3,916,596	+		GFF3876	0.24	+0.3
3,916,596	+		GFF3876	0.24	-0.2
3,916,599	-		GFF3876	0.25	+0.9
3,916,604	-		GFF3876	0.25	-0.4
3,916,616	-		GFF3876	0.26	-1.1
3,916,647	-		GFF3876	0.28	-0.3
3,916,657	+		GFF3876	0.29	+0.8
3,916,666	-		GFF3876	0.30	-1.3
3,916,670	+		GFF3876	0.30	-0.3
3,916,678	-		GFF3876	0.31	+0.7
3,916,680	+		GFF3876	0.31	-1.6
3,916,680	+		GFF3876	0.31	-0.1
3,916,680	+		GFF3876	0.31	+0.6
3,916,683	-		GFF3876	0.31	+0.0
3,916,688	-		GFF3876	0.32	-0.0
3,916,688	-		GFF3876	0.32	-0.8
3,916,699	+		GFF3876	0.33	+0.0
3,916,699	+		GFF3876	0.33	-0.8
3,916,707	-		GFF3876	0.33	+1.5
3,916,707	-		GFF3876	0.33	-0.6
3,916,730	+		GFF3876	0.35	-0.5
3,916,752	+		GFF3876	0.37	+0.8
3,916,752	+		GFF3876	0.37	-0.2
3,916,755	-		GFF3876	0.37	+0.3
3,916,757	+		GFF3876	0.37	-0.5
3,916,757	+		GFF3876	0.37	+0.8
3,916,758	+		GFF3876	0.37	+0.1
3,916,763	+		GFF3876	0.38	-1.0
3,916,765	-		GFF3876	0.38	-0.6
3,916,765	-		GFF3876	0.38	+0.3
3,916,781	+		GFF3876	0.39	-1.1
3,916,790	+		GFF3876	0.40	-0.1
3,916,790	+		GFF3876	0.40	+0.1
3,916,790	+		GFF3876	0.40	-0.3
3,916,790	+		GFF3876	0.40	+0.4
3,916,790	+		GFF3876	0.40	+0.4
3,916,790	+		GFF3876	0.40	+0.5
3,916,790	+		GFF3876	0.40	-1.9
3,916,790	+		GFF3876	0.40	-0.2
3,916,790	+		GFF3876	0.40	-0.4
3,916,790	+		GFF3876	0.40	-0.2
3,916,790	+		GFF3876	0.40	+1.2
3,916,798	-		GFF3876	0.40	-0.8
3,916,798	-		GFF3876	0.40	+0.6
3,916,798	-		GFF3876	0.40	+0.2
3,916,798	-		GFF3876	0.40	-2.2
3,916,798	-		GFF3876	0.40	+0.8
3,916,798	-		GFF3876	0.40	+0.7
3,916,829	+		GFF3876	0.43	-1.8
3,916,842	+		GFF3876	0.44	-0.0
3,916,850	-		GFF3876	0.44	-3.0
3,916,861	+		GFF3876	0.45	-1.5
3,916,861	+		GFF3876	0.45	-1.2
3,916,866	+		GFF3876	0.46	+0.2
3,916,869	-		GFF3876	0.46	-0.3
3,916,872	+		GFF3876	0.46	-0.6
3,916,872	+		GFF3876	0.46	+0.4
3,916,877	+		GFF3876	0.47	-0.9
3,916,882	+		GFF3876	0.47	-2.2
3,916,885	-		GFF3876	0.47	-0.5
3,916,885	-		GFF3876	0.47	-1.8
3,916,944	-		GFF3876	0.52	+0.4
3,916,994	+		GFF3876	0.56	-1.9
3,916,999	+		GFF3876	0.56	+0.1
3,916,999	+		GFF3876	0.56	+1.1
3,917,006	+		GFF3876	0.57	-0.9
3,917,006	+		GFF3876	0.57	-0.6
3,917,007	-		GFF3876	0.57	-0.3
3,917,019	-		GFF3876	0.58	+1.1
3,917,024	-		GFF3876	0.58	+0.1
3,917,036	-		GFF3876	0.59	+0.9
3,917,036	-		GFF3876	0.59	-1.2
3,917,036	-		GFF3876	0.59	+1.0
3,917,060	+		GFF3876	0.61	+0.8
3,917,060	+		GFF3876	0.61	-0.3
3,917,060	+		GFF3876	0.61	+0.4
3,917,060	+		GFF3876	0.61	+1.1
3,917,060	+		GFF3876	0.61	-0.4
3,917,060	+		GFF3876	0.61	+0.4
3,917,060	+		GFF3876	0.61	-1.2
3,917,060	+		GFF3876	0.61	-1.2
3,917,060	+		GFF3876	0.61	+0.0
3,917,060	+		GFF3876	0.61	-0.3
3,917,065	+		GFF3876	0.61	-0.9
3,917,068	-		GFF3876	0.62	-0.7
3,917,068	-		GFF3876	0.62	+0.1
3,917,068	-		GFF3876	0.62	-2.6
3,917,068	-		GFF3876	0.62	+0.6
3,917,068	-		GFF3876	0.62	-1.1
3,917,068	-		GFF3876	0.62	+0.6
3,917,070	+		GFF3876	0.62	+0.0
3,917,070	+		GFF3876	0.62	+0.5
3,917,070	+		GFF3876	0.62	+1.1
3,917,094	+		GFF3876	0.64	-0.9
3,917,119	-		GFF3876	0.66	-0.3
3,917,215	+		GFF3876	0.73	-1.0
3,917,278	+		GFF3876	0.78	-1.7
3,917,278	+		GFF3876	0.78	+0.7
3,917,286	-		GFF3876	0.79	+1.7
3,917,328	-		GFF3876	0.82	+0.7
3,917,338	-		GFF3876	0.83	-0.7
3,917,369	-		GFF3876	0.85	-2.0
3,917,428	+		GFF3876	0.90	-0.3
3,917,473	+				-0.7
3,917,473	+				+2.1
3,917,481	-				+0.8
3,917,481	-				+0.2
3,917,481	-				+0.3
3,917,483	+				-1.1
3,917,483	+				-0.7
3,917,483	+				-0.5
3,917,486	-				-0.3
3,917,515	+				-1.3
3,917,515	+				-0.3
3,917,515	+				+1.2
3,917,523	-				+0.5
3,917,527	+				+0.1
3,917,531	+				-0.6
3,917,531	+				+0.7
3,917,535	+				-0.3
3,917,537	+				-0.3
3,917,537	+				-1.8
3,917,539	-				-1.3
3,917,541	+				+0.2
3,917,543	-				-1.6
3,917,552	+				+0.6
3,917,560	-				-0.6
3,917,560	-				-1.0
3,917,562	+				+1.2
3,917,562	+				-1.3
3,917,571	-				-2.7
3,917,572	+				+0.2
3,917,605	+				+1.3
3,917,644	-				-2.7
3,917,649	-				-0.7
3,917,666	-				-0.2
3,917,672	+				+0.2
3,917,678	+				-2.5
3,917,683	+				+1.5
3,917,686	-				-1.7
3,917,686	-				+0.4
3,917,688	+				+0.3
3,917,688	-				+0.8
3,917,701	-				+1.5
3,917,701	-				+0.2
3,917,710	+				-1.6
3,917,780	+				-0.1
3,917,787	+				-0.3
3,917,788	-				-0.7
3,917,788	-				-0.8
3,917,798	+				-1.2
3,917,799	+				+0.1
3,917,807	-				-1.7
3,917,811	+				-1.0
3,917,819	-				-0.6
3,917,825	-				-2.4
3,917,845	-		GFF3877	0.16	-0.2
3,917,863	+		GFF3877	0.22	-0.4
3,917,895	+		GFF3877	0.32	-1.8
3,917,905	+		GFF3877	0.35	+0.5
3,917,908	-		GFF3877	0.36	-0.5
3,917,908	-		GFF3877	0.36	-0.3
3,917,913	-		GFF3877	0.38	-0.5
3,917,931	-		GFF3877	0.44	-1.3
3,917,939	+		GFF3877	0.46	+0.3
3,917,953	+		GFF3877	0.51	-1.5
3,917,957	-		GFF3877	0.52	+0.7
3,917,968	+		GFF3877	0.56	-0.5
3,917,969	+		GFF3877	0.56	-1.6
3,917,972	-		GFF3877	0.57	-3.4
3,917,972	-		GFF3877	0.57	-0.5
3,917,977	-		GFF3877	0.59	+0.8
3,917,977	-		GFF3877	0.59	-0.1
3,917,985	+		GFF3877	0.61	-0.3
3,917,985	+		GFF3877	0.61	+0.0
3,917,985	+		GFF3877	0.61	-0.1
3,917,985	+		GFF3877	0.61	-0.7
3,917,985	+		GFF3877	0.61	+0.7
3,917,985	+		GFF3877	0.61	+0.8
3,917,985	+		GFF3877	0.61	-0.6
3,917,985	+		GFF3877	0.61	+0.2
3,917,985	+		GFF3877	0.61	+1.1
3,917,985	+		GFF3877	0.61	-2.5
3,917,985	+		GFF3877	0.61	+0.8
3,917,985	+		GFF3877	0.61	+1.2
3,917,985	+		GFF3877	0.61	-2.0
3,917,985	+		GFF3877	0.61	-0.0
3,917,985	+		GFF3877	0.61	+0.2
3,917,985	+		GFF3877	0.61	-0.3
3,917,985	+		GFF3877	0.61	-2.2
3,917,985	+		GFF3877	0.61	-1.5
3,917,985	+		GFF3877	0.61	+1.2
3,917,985	+		GFF3877	0.61	-0.2
3,917,993	-		GFF3877	0.64	-0.0
3,917,993	-		GFF3877	0.64	+1.1
3,917,993	-		GFF3877	0.64	-0.2
3,917,993	-		GFF3877	0.64	-0.5
3,917,993	-		GFF3877	0.64	-0.5
3,917,993	-		GFF3877	0.64	-0.0
3,917,993	-		GFF3877	0.64	-0.9
3,917,993	-		GFF3877	0.64	-0.4
3,917,993	-		GFF3877	0.64	+0.6
3,918,009	+		GFF3877	0.69	-0.0
3,918,014	+		GFF3877	0.71	+0.2
3,918,014	+		GFF3877	0.71	-0.8
3,918,014	+		GFF3877	0.71	-0.7
3,918,022	-		GFF3877	0.73	-0.2
3,918,022	-		GFF3877	0.73	-0.2
3,918,043	-		GFF3877	0.80	-0.3
3,918,049	+		GFF3877	0.82	-0.7
3,918,050	+		GFF3877	0.82	+0.2
3,918,057	-		GFF3877	0.84	-0.3
3,918,059	+		GFF3877	0.85	-0.0
3,918,059	+		GFF3877	0.85	+0.3
3,918,064	+		GFF3877	0.87	-1.6
3,918,072	-		GFF3877	0.89	-0.1
3,918,077	+				-0.4
3,918,077	+				-0.1
3,918,079	-				+0.2
3,918,119	+				-1.1
3,918,122	-				-1.5
3,918,122	-				-1.2
3,918,132	-				-1.8
3,918,132	-				+0.2
3,918,137	+				-0.1
3,918,137	+				-1.7
3,918,140	-				+0.1
3,918,145	-				-0.1
3,918,164	+				-0.7
3,918,187	-				+0.1
3,918,206	+				-1.3
3,918,206	+				-0.1
3,918,206	+				-0.3
3,918,206	+				-0.2
3,918,206	-				-0.7
3,918,206	-				+0.6
3,918,206	-				+0.1
3,918,211	+				+0.1
3,918,211	+				+0.2
3,918,211	-				-1.3
3,918,214	-				+0.3
3,918,216	+				+0.1
3,918,216	+				+0.6
3,918,216	+				-0.2
3,918,216	+				+0.4
3,918,216	+				-1.1
3,918,224	-				-1.0
3,918,224	-				-1.3
3,918,224	-				+0.3
3,918,224	-				-0.6
3,918,233	+				-0.7
3,918,271	+		GFF3878	0.12	-0.0
3,918,281	+		GFF3878	0.14	+0.1
3,918,362	-		GFF3878	0.24	-1.5
3,918,387	+		GFF3878	0.28	+1.4
3,918,388	+		GFF3878	0.28	+0.6
3,918,408	+		GFF3878	0.30	+0.7
3,918,431	+		GFF3878	0.33	-0.6
3,918,440	-		GFF3878	0.35	+0.1
3,918,459	+		GFF3878	0.37	-1.7
3,918,506	-		GFF3878	0.43	-0.3
3,918,545	-		GFF3878	0.49	+0.2