Strain Fitness in Sphingobium sp. HT1-2 around GFF3871

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,911,065	+		GFF3869	0.47	+0.2
3,911,073	-		GFF3869	0.48	+0.0
3,911,074	+		GFF3869	0.48	-0.2
3,911,079	+		GFF3869	0.49	-1.0
3,911,133	+		GFF3869	0.56	-0.8
3,911,133	+		GFF3869	0.56	+0.4
3,911,133	+		GFF3869	0.56	-1.7
3,911,133	+		GFF3869	0.56	+0.3
3,911,140	+		GFF3869	0.57	-0.3
3,911,141	-		GFF3869	0.58	+0.8
3,911,170	+		GFF3869	0.62	+0.5
3,911,183	+		GFF3869	0.64	-1.0
3,911,192	+		GFF3869	0.65	+0.0
3,911,203	+		GFF3869	0.67	+1.0
3,911,225	+		GFF3869	0.70	+0.4
3,911,239	+		GFF3869	0.72	-2.3
3,911,249	+		GFF3869	0.73	-0.2
3,911,249	+		GFF3869	0.73	-1.8
3,911,261	+		GFF3869	0.75	+0.6
3,911,262	+		GFF3869	0.75	-1.9
3,911,270	-		GFF3869	0.76	-1.5
3,911,270	-		GFF3869	0.76	-1.2
3,911,270	-		GFF3869	0.76	+0.3
3,911,303	+		GFF3869	0.81	+0.2
3,911,303	+		GFF3869	0.81	-1.6
3,911,303	+		GFF3869	0.81	-0.3
3,911,303	+		GFF3869	0.81	+1.5
3,911,303	+		GFF3869	0.81	-1.2
3,911,303	+		GFF3869	0.81	-0.3
3,911,303	+		GFF3869	0.81	-1.9
3,911,311	-		GFF3869	0.82	+1.0
3,911,311	-		GFF3869	0.82	+0.4
3,911,311	-		GFF3869	0.82	-1.3
3,911,323	-		GFF3869	0.84	+1.6
3,911,323	-		GFF3869	0.84	-2.8
3,911,395	+				+0.1
3,911,397	-				+1.1
3,911,431	-				-0.4
3,911,431	-				-0.3
3,911,489	+				+0.3
3,911,497	-				-0.5
3,911,503	+				+0.1
3,911,503	+				+1.5
3,911,521	-				+0.3
3,911,521	-				+0.3
3,911,522	-				+0.8
3,911,533	+				+0.2
3,911,533	+				+1.4
3,911,533	+				+0.3
3,911,539	-				-0.5
3,911,578	-				+0.5
3,911,588	-				-0.6
3,911,595	+		GFF3870	0.10	-0.4
3,911,595	+		GFF3870	0.10	+0.7
3,911,595	+		GFF3870	0.10	+1.2
3,911,600	+		GFF3870	0.11	-0.0
3,911,603	-		GFF3870	0.12	+0.1
3,911,603	-		GFF3870	0.12	-1.5
3,911,632	+		GFF3870	0.19	-0.4
3,911,640	-		GFF3870	0.20	+0.3
3,911,640	-		GFF3870	0.20	-0.9
3,911,650	-		GFF3870	0.23	-1.4
3,911,658	+		GFF3870	0.24	-0.0
3,911,718	+		GFF3870	0.38	-1.3
3,911,718	+		GFF3870	0.38	+0.4
3,911,718	+		GFF3870	0.38	+0.1
3,911,718	-		GFF3870	0.38	-0.2
3,911,726	-		GFF3870	0.40	-1.6
3,911,726	-		GFF3870	0.40	-0.6
3,911,736	+		GFF3870	0.42	-0.9
3,911,736	+		GFF3870	0.42	-2.4
3,911,736	+		GFF3870	0.42	+1.0
3,911,736	+		GFF3870	0.42	-0.1
3,911,736	+		GFF3870	0.42	-0.8
3,911,736	+		GFF3870	0.42	-0.8
3,911,736	+		GFF3870	0.42	-0.7
3,911,736	+		GFF3870	0.42	-2.0
3,911,736	+		GFF3870	0.42	-1.4
3,911,736	+		GFF3870	0.42	+0.4
3,911,736	+		GFF3870	0.42	+0.6
3,911,736	+		GFF3870	0.42	-0.8
3,911,744	-		GFF3870	0.44	-0.1
3,911,744	-		GFF3870	0.44	-1.4
3,911,744	-		GFF3870	0.44	-1.4
3,911,744	-		GFF3870	0.44	-1.2
3,911,744	-		GFF3870	0.44	-0.6
3,911,744	-		GFF3870	0.44	-1.6
3,911,744	-		GFF3870	0.44	-0.4
3,911,744	-		GFF3870	0.44	-1.2
3,911,744	-		GFF3870	0.44	+0.7
3,911,744	-		GFF3870	0.44	-0.2
3,911,763	-		GFF3870	0.48	+0.7
3,911,772	+		GFF3870	0.50	-1.4
3,911,779	+		GFF3870	0.51	+0.6
3,911,780	+		GFF3870	0.52	-0.0
3,911,783	-		GFF3870	0.52	-0.2
3,911,788	-		GFF3870	0.53	-0.9
3,911,788	-		GFF3870	0.53	+0.6
3,911,788	-		GFF3870	0.53	+0.3
3,911,790	+		GFF3870	0.54	-0.6
3,911,804	+		GFF3870	0.57	-0.5
3,911,825	+		GFF3870	0.62	-1.4
3,911,825	+		GFF3870	0.62	-0.6
3,911,833	-		GFF3870	0.64	-0.3
3,911,833	-		GFF3870	0.64	+0.0
3,911,833	-		GFF3870	0.64	-0.9
3,911,833	-		GFF3870	0.64	-0.1
3,911,833	-		GFF3870	0.64	-0.9
3,911,838	-		GFF3870	0.65	+1.1
3,911,838	-		GFF3870	0.65	+1.2
3,911,848	+		GFF3870	0.67	-0.3
3,911,853	+		GFF3870	0.68	-1.4
3,911,856	-		GFF3870	0.69	-0.7
3,911,856	-		GFF3870	0.69	-0.4
3,911,857	-		GFF3870	0.69	-1.5
3,911,861	-		GFF3870	0.70	+0.5
3,911,861	-		GFF3870	0.70	+0.1
3,911,866	+		GFF3870	0.71	-0.7
3,911,866	+		GFF3870	0.71	-0.9
3,911,875	+		GFF3870	0.73	+0.2
3,911,883	-		GFF3870	0.75	-0.5
3,911,883	-		GFF3870	0.75	+0.6
3,911,883	-		GFF3870	0.75	-1.5
3,911,884	-		GFF3870	0.75	+0.9
3,911,948	-		GFF3870	0.89	+0.1
3,911,964	+				-1.2
3,911,974	+				-0.2
3,911,982	+				-0.8
3,911,997	+				+0.5
3,912,008	+				-0.8
3,912,012	+				-1.0
3,912,020	-				-1.6
3,912,023	-				+0.4
3,912,033	+				+0.0
3,912,033	+				-0.7
3,912,033	+				+0.6
3,912,041	-				-1.2
3,912,066	-		GFF3871	0.11	+0.1
3,912,072	-		GFF3871	0.13	-0.9
3,912,072	-		GFF3871	0.13	+1.1
3,912,078	+		GFF3871	0.14	-0.5
3,912,079	+		GFF3871	0.15	-0.4
3,912,081	+		GFF3871	0.15	-0.5
3,912,087	-		GFF3871	0.17	+0.0
3,912,120	+		GFF3871	0.26	-1.1
3,912,133	+		GFF3871	0.29	+0.8
3,912,140	+		GFF3871	0.31	+0.5
3,912,140	+		GFF3871	0.31	-0.2
3,912,140	+		GFF3871	0.31	-0.9
3,912,141	-		GFF3871	0.32	+0.1
3,912,148	-		GFF3871	0.34	-1.2
3,912,148	-		GFF3871	0.34	-0.2
3,912,148	-		GFF3871	0.34	-0.3
3,912,169	+		GFF3871	0.39	-1.7
3,912,175	+		GFF3871	0.41	-0.5
3,912,175	+		GFF3871	0.41	+0.0
3,912,183	-		GFF3871	0.43	-1.6
3,912,194	+		GFF3871	0.46	-0.4
3,912,201	+		GFF3871	0.48	-0.8
3,912,218	-		GFF3871	0.53	-0.1
3,912,273	+		GFF3871	0.68	-1.2
3,912,281	+		GFF3871	0.70	+1.2
3,912,285	+		GFF3871	0.71	-0.7
3,912,285	+		GFF3871	0.71	-0.2
3,912,304	+		GFF3871	0.77	+0.5
3,912,304	+		GFF3871	0.77	-1.3
3,912,304	+		GFF3871	0.77	-0.2
3,912,312	-		GFF3871	0.79	-0.3
3,912,312	-		GFF3871	0.79	-0.7
3,912,314	+		GFF3871	0.79	-1.2
3,912,314	+		GFF3871	0.79	-2.3
3,912,320	+		GFF3871	0.81	-1.0
3,912,322	-		GFF3871	0.82	-1.2
3,912,322	-		GFF3871	0.82	+0.9
3,912,328	-		GFF3871	0.83	-0.2
3,912,328	-		GFF3871	0.83	-2.4
3,912,328	-		GFF3871	0.83	+0.1
3,912,334	-		GFF3871	0.85	-0.1
3,912,334	-		GFF3871	0.85	+0.5
3,912,346	+		GFF3871	0.88	-1.5
3,912,349	-		GFF3871	0.89	+0.3
3,912,349	-		GFF3871	0.89	-0.7
3,912,354	-				-1.4
3,912,373	-				-0.5
3,912,382	+				-1.7
3,912,382	+				+0.3
3,912,384	+				-0.6
3,912,449	+				-0.9
3,912,454	+				-0.0
3,912,457	-				-1.9
3,912,457	-				-0.4
3,912,457	-				-0.4
3,912,457	-				-0.2
3,912,457	-				-0.5
3,912,457	-				-0.4
3,912,457	-				-1.5
3,912,473	-				-2.2
3,912,502	+		GFF3872	0.10	-0.8
3,912,502	+		GFF3872	0.10	-1.2
3,912,502	+		GFF3872	0.10	+0.3
3,912,502	+		GFF3872	0.10	-0.8
3,912,515	+		GFF3872	0.12	-0.1
3,912,515	+		GFF3872	0.12	-0.3
3,912,515	+		GFF3872	0.12	-0.4
3,912,515	+		GFF3872	0.12	-0.7
3,912,523	-		GFF3872	0.13	+0.9
3,912,533	-		GFF3872	0.14	+0.6
3,912,538	-		GFF3872	0.15	+0.1
3,912,572	+		GFF3872	0.19	+0.4
3,912,585	+		GFF3872	0.20	-0.9
3,912,598	-		GFF3872	0.22	+1.1
3,912,634	+		GFF3872	0.27	-2.4
3,912,647	+		GFF3872	0.28	-0.4
3,912,650	+		GFF3872	0.29	-1.4
3,912,650	+		GFF3872	0.29	+0.5
3,912,656	+		GFF3872	0.29	+0.9
3,912,721	+		GFF3872	0.37	-0.8
3,912,729	+		GFF3872	0.38	+0.3
3,912,758	+		GFF3872	0.42	+0.6
3,912,778	+		GFF3872	0.45	+0.4
3,912,789	+		GFF3872	0.46	+0.9
3,912,789	+		GFF3872	0.46	-1.7
3,912,789	+		GFF3872	0.46	-0.5
3,912,789	+		GFF3872	0.46	-1.4
3,912,789	+		GFF3872	0.46	-0.5
3,912,789	+		GFF3872	0.46	+1.4
3,912,789	+		GFF3872	0.46	-0.4
3,912,789	+		GFF3872	0.46	-0.8
3,912,795	-		GFF3872	0.47	+0.2
3,912,797	-		GFF3872	0.47	-1.1
3,912,797	-		GFF3872	0.47	-0.8
3,912,797	-		GFF3872	0.47	+0.0
3,912,797	-		GFF3872	0.47	+1.0
3,912,803	+		GFF3872	0.48	-0.4
3,912,806	-		GFF3872	0.48	+0.2
3,912,811	-		GFF3872	0.49	-0.1
3,912,848	-		GFF3872	0.53	+0.0
3,912,861	+		GFF3872	0.55	+0.5
3,912,868	-		GFF3872	0.56	-1.0
3,912,886	+		GFF3872	0.58	-0.5
3,912,886	+		GFF3872	0.58	-0.8
3,912,894	+		GFF3872	0.59	-0.7
3,912,894	+		GFF3872	0.59	+0.1
3,912,894	-		GFF3872	0.59	-0.6
3,912,894	-		GFF3872	0.59	-0.8
3,912,894	-		GFF3872	0.59	-0.5
3,912,894	-		GFF3872	0.59	-0.4
3,912,894	-		GFF3872	0.59	+1.0
3,912,894	-		GFF3872	0.59	-0.3
3,912,899	+		GFF3872	0.60	+1.1
3,912,902	-		GFF3872	0.60	-1.5
3,912,902	-		GFF3872	0.60	+0.1
3,912,907	-		GFF3872	0.61	-0.7
3,912,909	+		GFF3872	0.61	+0.8
3,912,909	+		GFF3872	0.61	-0.9
3,912,918	+		GFF3872	0.62	-0.1
3,912,918	+		GFF3872	0.62	-1.7
3,912,926	-		GFF3872	0.63	-0.4
3,912,946	-		GFF3872	0.66	+0.1
3,912,956	+		GFF3872	0.67	-0.7
3,912,959	-		GFF3872	0.67	+0.2
3,912,970	-		GFF3872	0.69	+0.9
3,912,988	+		GFF3872	0.71	+1.1
3,913,016	+		GFF3872	0.74	+0.7
3,913,042	-		GFF3872	0.78	+1.3
3,913,044	+		GFF3872	0.78	-1.6
3,913,056	+		GFF3872	0.79	+0.3
3,913,058	+		GFF3872	0.80	-0.5
3,913,059	-		GFF3872	0.80	-0.9
3,913,095	+		GFF3872	0.84	+0.4
3,913,095	+		GFF3872	0.84	+1.1
3,913,095	+		GFF3872	0.84	-0.8
3,913,095	+		GFF3872	0.84	+0.3
3,913,103	-		GFF3872	0.85	+0.8
3,913,103	-		GFF3872	0.85	+1.6
3,913,117	+		GFF3872	0.87	-1.4
3,913,117	+		GFF3872	0.87	+0.0
3,913,117	+		GFF3872	0.87	-0.7
3,913,117	+		GFF3872	0.87	-0.2
3,913,117	+		GFF3872	0.87	+0.1
3,913,117	+		GFF3872	0.87	-1.3
3,913,117	+		GFF3872	0.87	-1.2
3,913,117	+		GFF3872	0.87	-2.4
3,913,117	+		GFF3872	0.87	-0.4
3,913,117	+		GFF3872	0.87	-1.2
3,913,117	+		GFF3872	0.87	-0.8
3,913,117	+		GFF3872	0.87	+0.3
3,913,125	-		GFF3872	0.88	+0.7
3,913,125	-		GFF3872	0.88	-0.6
3,913,125	-		GFF3872	0.88	-1.0
3,913,125	-		GFF3872	0.88	-0.1
3,913,125	-		GFF3872	0.88	-0.5
3,913,125	-		GFF3872	0.88	-0.2
3,913,125	-		GFF3872	0.88	+1.0
3,913,125	-		GFF3872	0.88	-0.5
3,913,130	+		GFF3872	0.89	+0.7
3,913,148	-				-0.2
3,913,158	-				-0.6
3,913,159	+				-2.2
3,913,171	+				-1.4
3,913,197	+				+0.6
3,913,197	+				-3.1
3,913,197	+				+0.1
3,913,205	-				-0.7
3,913,205	-				+1.4
3,913,205	-				-0.3
3,913,210	+				+1.1
3,913,210	+				-1.3
3,913,210	+				+1.5
3,913,216	-				+1.3
3,913,228	+				+0.4
3,913,228	+				-0.2
3,913,259	+				+0.0
3,913,267	-				+0.1
3,913,298	-		GFF3873	0.16	-1.7
3,913,331	+		GFF3873	0.22	+0.1
3,913,337	+		GFF3873	0.24	-0.2
3,913,339	-		GFF3873	0.24	+0.0
3,913,339	-		GFF3873	0.24	-1.5
3,913,355	+		GFF3873	0.27	+1.2
3,913,381	+		GFF3873	0.33	-1.5