Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF384 and GFF385 are separated by 431 nucleotides GFF385 and GFF386 are separated by 117 nucleotides GFF386 and GFF387 are separated by 180 nucleotides GFF387 and GFF388 are separated by 7 nucleotides
GFF384 - Chromosomal replication initiator protein DnaA, at 375,110 to 376,528
GFF384
GFF385 - SSU ribosomal protein S20p, at 376,960 to 377,223
GFF385
GFF386 - Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23), at 377,341 to 378,153
GFF386
GFF387 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase (EC 2.1.1.201), at 378,334 to 379,065
GFF387
GFF388 - Ubiquinone biosynthesis regulatory protein kinase UbiB, at 379,073 to 380,614
GFF388
Position (kb) 377
378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 376.547 kb on - strand at 376.594 kb on - strand at 376.693 kb on - strand at 376.777 kb on + strand at 376.959 kb on - strand at 376.959 kb on - strand at 376.965 kb on - strand at 376.965 kb on - strand at 377.362 kb on + strand at 377.377 kb on + strand at 377.377 kb on + strand at 377.385 kb on - strand at 377.385 kb on - strand at 377.392 kb on + strand at 377.392 kb on + strand at 377.392 kb on + strand at 377.400 kb on - strand at 377.400 kb on - strand at 377.400 kb on - strand at 377.414 kb on + strand at 377.419 kb on + strand at 377.419 kb on + strand at 377.419 kb on + strand at 377.422 kb on - strand at 377.427 kb on - strand, within GFF386 at 377.427 kb on - strand, within GFF386 at 377.427 kb on - strand, within GFF386 at 377.434 kb on + strand, within GFF386 at 377.434 kb on + strand, within GFF386 at 377.442 kb on - strand, within GFF386 at 377.442 kb on - strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.499 kb on + strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.507 kb on - strand, within GFF386 at 377.517 kb on - strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.527 kb on + strand, within GFF386 at 377.530 kb on - strand, within GFF386 at 377.535 kb on - strand, within GFF386 at 377.535 kb on - strand, within GFF386 at 377.535 kb on - strand, within GFF386 at 377.535 kb on - strand, within GFF386 at 377.535 kb on - strand, within GFF386 at 377.535 kb on - strand, within GFF386 at 377.535 kb on - strand, within GFF386 at 377.554 kb on - strand, within GFF386 at 377.558 kb on + strand, within GFF386 at 377.563 kb on + strand, within GFF386 at 377.596 kb on + strand, within GFF386 at 377.617 kb on + strand, within GFF386 at 377.617 kb on + strand, within GFF386 at 377.617 kb on + strand, within GFF386 at 377.617 kb on + strand, within GFF386 at 377.617 kb on + strand, within GFF386 at 377.617 kb on + strand, within GFF386 at 377.620 kb on - strand, within GFF386 at 377.625 kb on - strand, within GFF386 at 377.625 kb on - strand, within GFF386 at 377.625 kb on - strand, within GFF386 at 377.625 kb on - strand, within GFF386 at 377.625 kb on - strand, within GFF386 at 377.625 kb on - strand, within GFF386 at 377.625 kb on - strand, within GFF386 at 377.625 kb on - strand, within GFF386 at 377.625 kb on - strand, within GFF386 at 377.625 kb on - strand, within GFF386 at 377.625 kb on - strand, within GFF386 at 377.632 kb on + strand, within GFF386 at 377.639 kb on + strand, within GFF386 at 377.644 kb on + strand, within GFF386 at 377.644 kb on + strand, within GFF386 at 377.644 kb on + strand, within GFF386 at 377.644 kb on + strand, within GFF386 at 377.644 kb on + strand, within GFF386 at 377.647 kb on - strand, within GFF386 at 377.665 kb on - strand, within GFF386 at 377.684 kb on - strand, within GFF386 at 377.686 kb on + strand, within GFF386 at 377.699 kb on - strand, within GFF386 at 377.728 kb on - strand, within GFF386 at 377.728 kb on - strand, within GFF386 at 377.751 kb on + strand, within GFF386 at 377.759 kb on - strand, within GFF386 at 377.767 kb on + strand, within GFF386 at 377.767 kb on + strand, within GFF386 at 377.767 kb on + strand, within GFF386 at 377.775 kb on + strand, within GFF386 at 377.775 kb on + strand, within GFF386 at 377.775 kb on + strand, within GFF386 at 377.775 kb on - strand, within GFF386 at 377.775 kb on - strand, within GFF386 at 377.775 kb on - strand, within GFF386 at 377.783 kb on - strand, within GFF386 at 377.783 kb on - strand, within GFF386 at 377.790 kb on - strand, within GFF386 at 377.802 kb on + strand, within GFF386 at 377.817 kb on + strand, within GFF386 at 377.817 kb on + strand, within GFF386 at 377.817 kb on + strand, within GFF386 at 377.817 kb on + strand, within GFF386 at 377.817 kb on + strand, within GFF386 at 377.825 kb on - strand, within GFF386 at 377.825 kb on - strand, within GFF386 at 377.825 kb on - strand, within GFF386 at 377.825 kb on - strand, within GFF386 at 377.825 kb on - strand, within GFF386 at 377.825 kb on - strand, within GFF386 at 377.825 kb on - strand, within GFF386 at 377.881 kb on + strand, within GFF386 at 377.918 kb on + strand, within GFF386 at 377.926 kb on - strand, within GFF386 at 377.971 kb on - strand, within GFF386 at 377.971 kb on - strand, within GFF386 at 377.971 kb on - strand, within GFF386 at 377.971 kb on - strand, within GFF386 at 377.971 kb on - strand, within GFF386 at 377.971 kb on - strand, within GFF386 at 377.971 kb on - strand, within GFF386 at 377.973 kb on + strand, within GFF386 at 377.974 kb on + strand, within GFF386 at 377.981 kb on - strand, within GFF386 at 377.997 kb on - strand, within GFF386 at 378.017 kb on + strand, within GFF386 at 378.017 kb on + strand, within GFF386 at 378.017 kb on + strand, within GFF386 at 378.025 kb on - strand, within GFF386 at 378.025 kb on - strand, within GFF386 at 378.027 kb on + strand, within GFF386 at 378.035 kb on - strand, within GFF386 at 378.041 kb on - strand, within GFF386 at 378.052 kb on + strand, within GFF386 at 378.052 kb on + strand, within GFF386 at 378.052 kb on + strand, within GFF386 at 378.052 kb on + strand, within GFF386 at 378.052 kb on + strand, within GFF386 at 378.052 kb on + strand, within GFF386 at 378.057 kb on + strand, within GFF386 at 378.060 kb on - strand, within GFF386 at 378.060 kb on - strand, within GFF386 at 378.060 kb on - strand, within GFF386 at 378.065 kb on - strand, within GFF386 at 378.071 kb on + strand, within GFF386 at 378.071 kb on + strand, within GFF386 at 378.071 kb on + strand, within GFF386 at 378.071 kb on + strand, within GFF386 at 378.071 kb on + strand, within GFF386 at 378.077 kb on + strand at 378.079 kb on - strand at 378.079 kb on - strand at 378.079 kb on - strand at 378.079 kb on - strand at 378.079 kb on - strand at 378.079 kb on - strand at 378.080 kb on + strand at 378.081 kb on + strand at 378.081 kb on + strand at 378.081 kb on + strand at 378.085 kb on - strand at 378.087 kb on + strand at 378.087 kb on + strand at 378.097 kb on + strand at 378.097 kb on + strand at 378.097 kb on + strand at 378.097 kb on + strand at 378.097 kb on + strand at 378.100 kb on - strand at 378.105 kb on - strand at 378.105 kb on - strand at 378.107 kb on + strand at 378.122 kb on - strand at 378.122 kb on - strand at 378.144 kb on + strand at 378.144 kb on + strand at 378.144 kb on + strand at 378.144 kb on + strand at 378.149 kb on + strand at 378.149 kb on + strand at 378.149 kb on + strand at 378.149 kb on + strand at 378.149 kb on + strand at 378.152 kb on - strand at 378.152 kb on - strand at 378.152 kb on - strand at 378.152 kb on - strand at 378.152 kb on - strand at 378.152 kb on - strand at 378.157 kb on - strand at 378.157 kb on - strand at 378.157 kb on - strand at 378.205 kb on + strand at 378.205 kb on + strand at 378.205 kb on + strand at 378.205 kb on + strand at 378.206 kb on + strand at 378.212 kb on + strand at 378.213 kb on - strand at 378.213 kb on - strand at 378.213 kb on - strand at 378.213 kb on - strand at 378.214 kb on - strand at 378.214 kb on - strand at 378.220 kb on - strand at 378.229 kb on + strand at 378.236 kb on + strand at 378.244 kb on - strand at 378.252 kb on + strand at 378.263 kb on - strand at 378.265 kb on + strand at 378.268 kb on - strand at 378.273 kb on - strand at 378.295 kb on + strand at 378.297 kb on + strand at 378.304 kb on - strand at 378.320 kb on + strand at 379.059 kb on + strand at 379.059 kb on + strand at 379.078 kb on - strand at 379.088 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 376,547 - -0.3 376,594 - +1.0 376,693 - +0.5 376,777 + +0.4 376,959 - +0.1 376,959 - -0.5 376,965 - -1.0 376,965 - -0.1 377,362 + +0.3 377,377 + -1.9 377,377 + +0.5 377,385 - -0.3 377,385 - -0.5 377,392 + -0.5 377,392 + +0.2 377,392 + -1.1 377,400 - -1.2 377,400 - -0.2 377,400 - +0.0 377,414 + +0.0 377,419 + +0.3 377,419 + +0.2 377,419 + +0.4 377,422 - -2.2 377,427 - GFF386 0.11 -0.5 377,427 - GFF386 0.11 -0.1 377,427 - GFF386 0.11 -0.8 377,434 + GFF386 0.11 -1.5 377,434 + GFF386 0.11 -1.0 377,442 - GFF386 0.12 -0.8 377,442 - GFF386 0.12 +0.9 377,499 + GFF386 0.19 +0.8 377,499 + GFF386 0.19 -2.3 377,499 + GFF386 0.19 -0.2 377,499 + GFF386 0.19 -0.3 377,499 + GFF386 0.19 +0.1 377,499 + GFF386 0.19 -0.4 377,499 + GFF386 0.19 -0.3 377,499 + GFF386 0.19 +1.6 377,499 + GFF386 0.19 -0.0 377,499 + GFF386 0.19 +0.5 377,499 + GFF386 0.19 +0.1 377,499 + GFF386 0.19 -0.9 377,499 + GFF386 0.19 +0.3 377,499 + GFF386 0.19 -1.8 377,499 + GFF386 0.19 -0.5 377,499 + GFF386 0.19 +0.0 377,499 + GFF386 0.19 -0.1 377,507 - GFF386 0.20 -2.9 377,507 - GFF386 0.20 -0.3 377,507 - GFF386 0.20 -0.6 377,507 - GFF386 0.20 -0.3 377,507 - GFF386 0.20 -0.2 377,507 - GFF386 0.20 -1.4 377,507 - GFF386 0.20 -0.0 377,507 - GFF386 0.20 +0.0 377,507 - GFF386 0.20 +0.4 377,507 - GFF386 0.20 -0.7 377,507 - GFF386 0.20 -0.3 377,507 - GFF386 0.20 -2.7 377,507 - GFF386 0.20 -1.2 377,507 - GFF386 0.20 +0.2 377,507 - GFF386 0.20 -0.0 377,507 - GFF386 0.20 +0.1 377,507 - GFF386 0.20 -1.8 377,507 - GFF386 0.20 +0.7 377,507 - GFF386 0.20 -0.1 377,517 - GFF386 0.22 -1.3 377,527 + GFF386 0.23 +0.9 377,527 + GFF386 0.23 -0.9 377,527 + GFF386 0.23 +0.6 377,527 + GFF386 0.23 -0.1 377,527 + GFF386 0.23 -1.0 377,527 + GFF386 0.23 -0.5 377,527 + GFF386 0.23 +1.2 377,527 + GFF386 0.23 -0.8 377,527 + GFF386 0.23 +0.6 377,527 + GFF386 0.23 +0.4 377,530 - GFF386 0.23 -0.3 377,535 - GFF386 0.24 +0.3 377,535 - GFF386 0.24 -1.0 377,535 - GFF386 0.24 -1.2 377,535 - GFF386 0.24 +0.7 377,535 - GFF386 0.24 -1.0 377,535 - GFF386 0.24 -0.4 377,535 - GFF386 0.24 -0.0 377,554 - GFF386 0.26 -0.5 377,558 + GFF386 0.27 +0.6 377,563 + GFF386 0.27 -2.1 377,596 + GFF386 0.31 +0.4 377,617 + GFF386 0.34 -0.3 377,617 + GFF386 0.34 +0.2 377,617 + GFF386 0.34 -0.3 377,617 + GFF386 0.34 +0.4 377,617 + GFF386 0.34 -0.6 377,617 + GFF386 0.34 -0.1 377,620 - GFF386 0.34 +1.1 377,625 - GFF386 0.35 -1.3 377,625 - GFF386 0.35 -0.2 377,625 - GFF386 0.35 +1.0 377,625 - GFF386 0.35 +0.2 377,625 - GFF386 0.35 +0.5 377,625 - GFF386 0.35 -2.8 377,625 - GFF386 0.35 +0.7 377,625 - GFF386 0.35 +0.5 377,625 - GFF386 0.35 -1.6 377,625 - GFF386 0.35 +0.7 377,625 - GFF386 0.35 +0.7 377,632 + GFF386 0.36 -0.8 377,639 + GFF386 0.37 +0.1 377,644 + GFF386 0.37 -0.1 377,644 + GFF386 0.37 +0.1 377,644 + GFF386 0.37 +0.3 377,644 + GFF386 0.37 -0.1 377,644 + GFF386 0.37 -0.4 377,647 - GFF386 0.38 -2.6 377,665 - GFF386 0.40 -0.4 377,684 - GFF386 0.42 +1.5 377,686 + GFF386 0.42 +0.2 377,699 - GFF386 0.44 +0.1 377,728 - GFF386 0.48 -0.6 377,728 - GFF386 0.48 -1.0 377,751 + GFF386 0.50 -2.2 377,759 - GFF386 0.51 +0.4 377,767 + GFF386 0.52 -1.8 377,767 + GFF386 0.52 -0.1 377,767 + GFF386 0.52 +1.3 377,775 + GFF386 0.53 +0.6 377,775 + GFF386 0.53 -0.9 377,775 + GFF386 0.53 +1.0 377,775 - GFF386 0.53 -0.3 377,775 - GFF386 0.53 -1.1 377,775 - GFF386 0.53 -0.7 377,783 - GFF386 0.54 -0.5 377,783 - GFF386 0.54 -1.8 377,790 - GFF386 0.55 -0.1 377,802 + GFF386 0.57 -1.0 377,817 + GFF386 0.59 +0.2 377,817 + GFF386 0.59 -0.8 377,817 + GFF386 0.59 +0.9 377,817 + GFF386 0.59 -0.5 377,817 + GFF386 0.59 +0.6 377,825 - GFF386 0.60 -0.0 377,825 - GFF386 0.60 +0.9 377,825 - GFF386 0.60 +0.4 377,825 - GFF386 0.60 -1.0 377,825 - GFF386 0.60 +0.2 377,825 - GFF386 0.60 +0.5 377,825 - GFF386 0.60 -0.4 377,881 + GFF386 0.66 -2.0 377,918 + GFF386 0.71 +0.5 377,926 - GFF386 0.72 +0.1 377,971 - GFF386 0.77 -0.2 377,971 - GFF386 0.77 -0.7 377,971 - GFF386 0.77 -0.9 377,971 - GFF386 0.77 -1.0 377,971 - GFF386 0.77 -0.5 377,971 - GFF386 0.77 +0.9 377,971 - GFF386 0.77 +1.2 377,973 + GFF386 0.78 -0.2 377,974 + GFF386 0.78 +0.9 377,981 - GFF386 0.79 +0.6 377,997 - GFF386 0.81 +1.1 378,017 + GFF386 0.83 -0.5 378,017 + GFF386 0.83 -1.3 378,017 + GFF386 0.83 +0.1 378,025 - GFF386 0.84 +0.1 378,025 - GFF386 0.84 +0.6 378,027 + GFF386 0.84 -1.7 378,035 - GFF386 0.85 +1.2 378,041 - GFF386 0.86 -1.2 378,052 + GFF386 0.87 -2.6 378,052 + GFF386 0.87 +0.7 378,052 + GFF386 0.87 +1.2 378,052 + GFF386 0.87 +0.4 378,052 + GFF386 0.87 -1.2 378,052 + GFF386 0.87 +0.4 378,057 + GFF386 0.88 -0.5 378,060 - GFF386 0.88 -0.6 378,060 - GFF386 0.88 +0.7 378,060 - GFF386 0.88 -1.6 378,065 - GFF386 0.89 -0.1 378,071 + GFF386 0.90 -0.8 378,071 + GFF386 0.90 -2.4 378,071 + GFF386 0.90 -0.6 378,071 + GFF386 0.90 -0.3 378,071 + GFF386 0.90 -1.7 378,077 + -1.4 378,079 - +0.2 378,079 - -1.9 378,079 - -0.0 378,079 - -2.0 378,079 - -0.3 378,079 - -1.3 378,080 + +0.5 378,081 + -1.0 378,081 + +0.7 378,081 + -0.0 378,085 - +0.6 378,087 + +0.6 378,087 + -2.3 378,097 + +0.5 378,097 + -0.3 378,097 + -1.9 378,097 + -2.6 378,097 + +0.2 378,100 - -0.4 378,105 - +1.1 378,105 - +0.2 378,107 + -0.3 378,122 - -0.7 378,122 - -1.0 378,144 + -1.3 378,144 + +0.8 378,144 + -0.7 378,144 + -1.3 378,149 + -1.0 378,149 + -0.3 378,149 + -1.5 378,149 + -0.5 378,149 + -1.5 378,152 - +0.4 378,152 - -1.3 378,152 - -0.5 378,152 - +0.8 378,152 - +0.7 378,152 - +1.1 378,157 - +0.8 378,157 - +0.6 378,157 - +0.5 378,205 + -0.3 378,205 + +0.6 378,205 + -1.6 378,205 + +1.7 378,206 + +0.9 378,212 + +0.5 378,213 - +0.5 378,213 - -1.5 378,213 - -1.2 378,213 - +0.0 378,214 - -0.3 378,214 - -1.3 378,220 - +0.3 378,229 + +0.7 378,236 + +0.1 378,244 - -1.3 378,252 + +0.1 378,263 - +1.8 378,265 + -2.1 378,268 - +0.3 378,273 - -0.2 378,295 + +0.6 378,297 + +1.6 378,304 - -1.1 378,320 + +0.2 379,059 + +0.1 379,059 + +0.2 379,078 - -1.8 379,088 + -0.4
Or see this region's nucleotide sequence