Strain Fitness in Sphingobium sp. HT1-2 around GFF3854

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,893,228	-		GFF3853	0.17	-1.7
3,893,241	-		GFF3853	0.18	-2.2
3,893,258	+		GFF3853	0.20	-0.1
3,893,258	+		GFF3853	0.20	-1.9
3,893,266	-		GFF3853	0.21	-0.6
3,893,299	-		GFF3853	0.24	-1.4
3,893,319	+		GFF3853	0.26	-0.8
3,893,319	+		GFF3853	0.26	-2.3
3,893,319	+		GFF3853	0.26	-1.2
3,893,319	+		GFF3853	0.26	-1.5
3,893,327	-		GFF3853	0.26	+0.6
3,893,327	-		GFF3853	0.26	-1.3
3,893,327	-		GFF3853	0.26	-0.6
3,893,327	-		GFF3853	0.26	-0.4
3,893,345	-		GFF3853	0.28	+0.9
3,893,359	+		GFF3853	0.29	-1.1
3,893,375	+		GFF3853	0.31	-0.5
3,893,393	+		GFF3853	0.33	+0.8
3,893,393	+		GFF3853	0.33	-1.2
3,893,393	+		GFF3853	0.33	-0.2
3,893,393	+		GFF3853	0.33	+1.3
3,893,393	+		GFF3853	0.33	-0.8
3,893,393	+		GFF3853	0.33	-0.5
3,893,393	+		GFF3853	0.33	-0.5
3,893,393	+		GFF3853	0.33	-1.7
3,893,393	+		GFF3853	0.33	+0.0
3,893,401	-		GFF3853	0.33	+0.2
3,893,401	-		GFF3853	0.33	-0.8
3,893,401	-		GFF3853	0.33	-0.2
3,893,401	-		GFF3853	0.33	+1.0
3,893,401	-		GFF3853	0.33	-0.6
3,893,401	-		GFF3853	0.33	+1.1
3,893,420	+		GFF3853	0.35	-0.7
3,893,420	+		GFF3853	0.35	-1.2
3,893,435	+		GFF3853	0.36	+0.0
3,893,435	+		GFF3853	0.36	-0.6
3,893,435	+		GFF3853	0.36	-0.5
3,893,438	-		GFF3853	0.37	+0.2
3,893,441	+		GFF3853	0.37	-2.3
3,893,441	+		GFF3853	0.37	-1.6
3,893,443	-		GFF3853	0.37	-1.7
3,893,449	+		GFF3853	0.38	+1.0
3,893,449	+		GFF3853	0.38	+1.0
3,893,449	-		GFF3853	0.38	-0.1
3,893,449	-		GFF3853	0.38	+1.5
3,893,451	+		GFF3853	0.38	-0.5
3,893,451	+		GFF3853	0.38	+0.1
3,893,459	-		GFF3853	0.39	-0.2
3,893,459	-		GFF3853	0.39	-0.3
3,893,469	+		GFF3853	0.40	-1.0
3,893,482	+		GFF3853	0.41	-0.0
3,893,482	+		GFF3853	0.41	-0.4
3,893,482	+		GFF3853	0.41	-0.5
3,893,489	-		GFF3853	0.42	-0.7
3,893,492	+		GFF3853	0.42	-1.1
3,893,515	+		GFF3853	0.44	+0.3
3,893,515	+		GFF3853	0.44	-0.7
3,893,515	+		GFF3853	0.44	+0.7
3,893,523	-		GFF3853	0.45	+0.2
3,893,531	+		GFF3853	0.45	-2.2
3,893,545	+		GFF3853	0.47	-0.5
3,893,545	+		GFF3853	0.47	-1.7
3,893,553	-		GFF3853	0.47	-1.6
3,893,553	-		GFF3853	0.47	-1.9
3,893,555	+		GFF3853	0.48	-1.9
3,893,560	+		GFF3853	0.48	-0.5
3,893,576	-		GFF3853	0.50	+0.5
3,893,577	-		GFF3853	0.50	+0.1
3,893,599	+		GFF3853	0.52	+0.8
3,893,607	-		GFF3853	0.53	+0.4
3,893,634	-		GFF3853	0.55	+0.9
3,893,647	+		GFF3853	0.56	-0.6
3,893,655	-		GFF3853	0.57	-1.6
3,893,661	+		GFF3853	0.58	-1.2
3,893,674	-		GFF3853	0.59	+1.1
3,893,681	+		GFF3853	0.59	-0.1
3,893,681	+		GFF3853	0.59	-1.1
3,893,681	+		GFF3853	0.59	-2.5
3,893,681	+		GFF3853	0.59	-1.5
3,893,681	+		GFF3853	0.59	-1.4
3,893,681	+		GFF3853	0.59	-1.5
3,893,681	+		GFF3853	0.59	-2.1
3,893,681	+		GFF3853	0.59	-0.9
3,893,689	-		GFF3853	0.60	-0.5
3,893,689	-		GFF3853	0.60	+0.3
3,893,689	-		GFF3853	0.60	-0.1
3,893,689	-		GFF3853	0.60	-0.9
3,893,689	-		GFF3853	0.60	+0.6
3,893,689	-		GFF3853	0.60	+0.2
3,893,689	-		GFF3853	0.60	+0.2
3,893,689	-		GFF3853	0.60	-0.9
3,893,701	-		GFF3853	0.61	-0.4
3,893,709	+		GFF3853	0.62	+0.2
3,893,709	+		GFF3853	0.62	+1.1
3,893,717	-		GFF3853	0.63	+0.7
3,893,717	-		GFF3853	0.63	-0.0
3,893,751	+		GFF3853	0.66	+0.5
3,893,751	+		GFF3853	0.66	-0.0
3,893,751	+		GFF3853	0.66	-1.2
3,893,752	+		GFF3853	0.66	-0.7
3,893,752	+		GFF3853	0.66	-1.5
3,893,752	+		GFF3853	0.66	-2.2
3,893,752	+		GFF3853	0.66	-0.9
3,893,752	+		GFF3853	0.66	-0.4
3,893,752	+		GFF3853	0.66	-0.1
3,893,752	+		GFF3853	0.66	-0.7
3,893,752	+		GFF3853	0.66	-1.4
3,893,752	+		GFF3853	0.66	+0.1
3,893,752	+		GFF3853	0.66	+1.3
3,893,757	+		GFF3853	0.66	+0.7
3,893,757	+		GFF3853	0.66	-0.2
3,893,757	+		GFF3853	0.66	+0.0
3,893,759	-		GFF3853	0.67	-0.3
3,893,759	-		GFF3853	0.67	-0.7
3,893,759	-		GFF3853	0.67	-0.3
3,893,759	-		GFF3853	0.67	+0.4
3,893,760	-		GFF3853	0.67	-1.9
3,893,760	-		GFF3853	0.67	+0.8
3,893,760	-		GFF3853	0.67	-1.1
3,893,760	-		GFF3853	0.67	-1.3
3,893,760	-		GFF3853	0.67	+0.1
3,893,760	-		GFF3853	0.67	+0.1
3,893,760	-		GFF3853	0.67	-0.7
3,893,760	-		GFF3853	0.67	+0.4
3,893,760	-		GFF3853	0.67	+1.4
3,893,762	+		GFF3853	0.67	-0.8
3,893,765	-		GFF3853	0.67	+1.4
3,893,765	-		GFF3853	0.67	-0.9
3,893,765	-		GFF3853	0.67	-1.2
3,893,765	-		GFF3853	0.67	-1.4
3,893,765	-		GFF3853	0.67	-1.7
3,893,770	-		GFF3853	0.68	-1.6
3,893,770	-		GFF3853	0.68	+0.9
3,893,776	+		GFF3853	0.68	+0.3
3,893,782	+		GFF3853	0.69	-0.5
3,893,782	+		GFF3853	0.69	-0.3
3,893,782	+		GFF3853	0.69	-0.3
3,893,782	+		GFF3853	0.69	-0.4
3,893,782	+		GFF3853	0.69	-1.5
3,893,782	+		GFF3853	0.69	-0.6
3,893,790	-		GFF3853	0.70	-0.8
3,893,790	-		GFF3853	0.70	+0.7
3,893,790	-		GFF3853	0.70	-1.5
3,893,790	-		GFF3853	0.70	-0.3
3,893,804	+		GFF3853	0.71	+0.1
3,893,809	+		GFF3853	0.71	+0.4
3,893,809	+		GFF3853	0.71	+0.6
3,893,809	+		GFF3853	0.71	+1.2
3,893,817	-		GFF3853	0.72	-0.4
3,893,829	+		GFF3853	0.73	-1.1
3,893,832	-		GFF3853	0.73	-0.9
3,893,832	-		GFF3853	0.73	-1.3
3,893,837	-		GFF3853	0.74	+1.1
3,893,837	-		GFF3853	0.74	+0.6
3,893,868	+		GFF3853	0.77	+0.1
3,893,906	+		GFF3853	0.80	-1.2
3,893,914	-		GFF3853	0.81	+0.1
3,893,948	+		GFF3853	0.84	-0.1
3,893,990	-		GFF3853	0.88	-1.0
3,893,996	+		GFF3853	0.89	-0.9
3,894,001	+		GFF3853	0.89	-0.4
3,894,014	+				+0.8
3,894,035	+				-1.6
3,894,043	-				+1.1
3,894,043	-				-1.1
3,894,053	+				+0.7
3,894,066	+				+0.6
3,894,066	+				-0.1
3,894,075	-				-0.5
3,894,077	+				-0.7
3,894,078	-				-0.9
3,894,081	+				-0.7
3,894,101	+				-0.4
3,894,101	+				+0.5
3,894,101	+				+0.5
3,894,101	+				+0.9
3,894,107	+				+0.6
3,894,109	-				-0.4
3,894,109	-				-1.5
3,894,114	+				-0.3
3,894,119	+				+0.8
3,894,122	-				-0.5
3,894,124	+				+0.1
3,894,135	-				-1.2
3,894,135	-				-1.0
3,894,135	-				+0.2
3,894,158	+				-1.7
3,894,161	+				-1.0
3,894,174	+				+1.4
3,894,174	+				-0.8
3,894,182	+				-0.7
3,894,182	+				-0.9
3,894,182	+				+0.1
3,894,182	+				-1.4
3,894,190	+				-0.2
3,894,190	+				+0.8
3,894,190	-				+0.0
3,894,198	-				-1.1
3,894,198	-				-1.9
3,894,227	+				-2.4
3,894,254	+				-0.0
3,894,254	+				-0.0
3,894,257	+				+0.6
3,894,262	+				-0.9
3,894,262	+				+1.3
3,894,262	+				-2.1
3,894,262	-				-0.0
3,894,262	-				-2.9
3,894,262	-				-0.4
3,894,262	-				+0.7
3,894,265	-				-1.0
3,894,270	-				-0.6
3,894,275	-				-1.0
3,894,287	+				-1.4
3,894,332	+		GFF3854	0.17	-0.9
3,894,335	-		GFF3854	0.17	+1.0
3,894,335	-		GFF3854	0.17	+0.2
3,894,335	-		GFF3854	0.17	+1.7
3,894,341	+		GFF3854	0.18	+0.5
3,894,351	+		GFF3854	0.20	+0.0
3,894,359	-		GFF3854	0.21	-0.3
3,894,360	+		GFF3854	0.21	+0.2
3,894,360	-		GFF3854	0.21	-0.7
3,894,361	+		GFF3854	0.21	-0.5
3,894,362	+		GFF3854	0.21	+0.1
3,894,362	+		GFF3854	0.21	+0.4
3,894,364	-		GFF3854	0.22	-1.9
3,894,367	+		GFF3854	0.22	-0.4
3,894,375	-		GFF3854	0.23	-1.0
3,894,375	-		GFF3854	0.23	-0.5
3,894,380	-		GFF3854	0.24	-1.4
3,894,427	-		GFF3854	0.31	+0.1
3,894,433	+		GFF3854	0.32	-1.0
3,894,441	-		GFF3854	0.33	-0.4
3,894,446	-		GFF3854	0.34	-1.4
3,894,457	+		GFF3854	0.36	-1.5
3,894,457	+		GFF3854	0.36	-0.4
3,894,462	+		GFF3854	0.37	-0.4
3,894,479	+		GFF3854	0.39	-0.3
3,894,479	+		GFF3854	0.39	-1.1
3,894,479	+		GFF3854	0.39	+0.4
3,894,479	+		GFF3854	0.39	-1.1
3,894,486	-		GFF3854	0.40	+0.3
3,894,487	-		GFF3854	0.40	-0.7
3,894,487	-		GFF3854	0.40	+0.3
3,894,487	-		GFF3854	0.40	-1.2
3,894,524	-		GFF3854	0.46	+0.7
3,894,650	+		GFF3854	0.65	-2.2
3,894,650	+		GFF3854	0.65	-0.5
3,894,650	+		GFF3854	0.65	-0.7
3,894,650	+		GFF3854	0.65	-2.2
3,894,652	-		GFF3854	0.66	-0.9
3,894,658	-		GFF3854	0.67	-0.7
3,894,658	-		GFF3854	0.67	-0.6
3,894,658	-		GFF3854	0.67	+1.2
3,894,671	+		GFF3854	0.69	+0.8
3,894,691	+		GFF3854	0.72	-1.4
3,894,701	+		GFF3854	0.73	-0.7
3,894,701	+		GFF3854	0.73	+1.1
3,894,709	-		GFF3854	0.74	-0.1
3,894,742	+		GFF3854	0.79	+0.1
3,894,742	+		GFF3854	0.79	-1.3
3,894,749	+		GFF3854	0.80	-0.1
3,894,750	-		GFF3854	0.81	-2.2
3,894,750	-		GFF3854	0.81	+1.0
3,894,750	-		GFF3854	0.81	-2.6
3,894,750	-		GFF3854	0.81	-1.4
3,894,757	-		GFF3854	0.82	-2.5
3,894,757	-		GFF3854	0.82	+0.9
3,894,763	+		GFF3854	0.83	-0.7
3,894,763	+		GFF3854	0.83	-1.4
3,894,763	+		GFF3854	0.83	+0.2
3,894,768	+		GFF3854	0.83	-0.2
3,894,771	-		GFF3854	0.84	+0.3
3,894,771	-		GFF3854	0.84	-0.2
3,894,771	-		GFF3854	0.84	+1.5
3,894,771	-		GFF3854	0.84	+0.0
3,894,771	-		GFF3854	0.84	-1.1
3,894,771	-		GFF3854	0.84	+0.2
3,894,782	+		GFF3854	0.85	+0.6
3,894,784	+		GFF3854	0.86	+1.5
3,894,792	-		GFF3854	0.87	-0.4
3,894,818	-				-1.9
3,894,824	+				+0.4
3,894,824	+				+0.8
3,894,832	-				-0.3
3,894,848	+				-2.5
3,894,856	-				-1.3
3,894,866	+				-0.3
3,894,890	+				-0.2
3,894,890	+				+0.4
3,894,898	-				+0.3
3,894,903	+				-0.7
3,894,903	+				+0.3
3,894,903	+				-0.9
3,894,903	+				+0.1
3,894,903	+				+0.2
3,894,903	+				+0.2
3,894,903	+				-0.7
3,894,903	+				-0.7
3,894,903	+				+1.3
3,894,903	+				-0.6
3,894,903	+				+0.6
3,894,904	-				-0.5
3,894,909	-				-0.7
3,894,909	-				+0.3
3,894,909	-				-2.4
3,894,911	-				-1.5
3,894,911	-				+1.0
3,894,911	-				-0.2
3,894,911	-				+0.3
3,894,911	-				+1.2
3,894,919	-				-0.5
3,894,925	+				-0.9
3,894,930	+				+1.0
3,894,942	+				-1.9
3,894,945	-				-0.2
3,894,979	-				+0.5
3,894,999	-				-0.7
3,895,000	-				+0.8
3,895,020	+		GFF3855	0.11	+0.6
3,895,020	+		GFF3855	0.11	+0.3
3,895,021	-		GFF3855	0.11	-0.0
3,895,025	+		GFF3855	0.11	+0.2
3,895,028	-		GFF3855	0.11	-2.0
3,895,033	-		GFF3855	0.12	-1.4
3,895,033	-		GFF3855	0.12	-0.8
3,895,033	-		GFF3855	0.12	+0.9
3,895,059	-		GFF3855	0.14	-0.5
3,895,066	+		GFF3855	0.14	+0.9
3,895,066	+		GFF3855	0.14	-2.1
3,895,074	-		GFF3855	0.15	-1.9
3,895,081	+		GFF3855	0.15	+0.0
3,895,094	-		GFF3855	0.16	+1.2
3,895,094	-		GFF3855	0.16	+0.5
3,895,094	-		GFF3855	0.16	-1.7
3,895,138	-		GFF3855	0.19	-0.4
3,895,143	-		GFF3855	0.20	-1.0
3,895,143	-		GFF3855	0.20	+0.1
3,895,143	-		GFF3855	0.20	+0.4
3,895,162	+		GFF3855	0.21	-2.3
3,895,162	+		GFF3855	0.21	-1.0
3,895,162	+		GFF3855	0.21	+0.3
3,895,167	+		GFF3855	0.21	-0.4
3,895,170	-		GFF3855	0.22	+0.5
3,895,172	+		GFF3855	0.22	-0.2
3,895,195	+		GFF3855	0.23	-0.9
3,895,198	-		GFF3855	0.23	-0.3
3,895,203	-		GFF3855	0.24	-0.4
3,895,208	-		GFF3855	0.24	+0.4
3,895,247	+		GFF3855	0.27	+0.5
3,895,255	-		GFF3855	0.28	-0.3
3,895,255	-		GFF3855	0.28	-0.5
3,895,264	+		GFF3855	0.28	-2.2
3,895,293	+		GFF3855	0.30	-2.3
3,895,320	-		GFF3855	0.32	-0.4
3,895,328	-		GFF3855	0.33	-0.2
3,895,358	+		GFF3855	0.35	+0.9
3,895,363	-		GFF3855	0.35	+0.1
3,895,384	+		GFF3855	0.37	-0.7
3,895,403	+		GFF3855	0.38	-0.6
3,895,413	-		GFF3855	0.39	+0.9
3,895,441	+		GFF3855	0.41	-1.1
3,895,441	+		GFF3855	0.41	-1.5
3,895,441	+		GFF3855	0.41	-0.6
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