Strain Fitness in Sphingobium sp. HT1-2 around GFF3839

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,876,610	-				+0.7
3,876,615	+				+0.1
3,876,620	+				+1.1
3,876,620	+				-1.7
3,876,623	-				+0.1
3,876,628	-				-1.8
3,876,646	+				-0.4
3,876,660	+				-0.9
3,876,676	+				+0.9
3,876,695	+				-2.0
3,876,730	+				+0.1
3,876,730	+				+0.2
3,876,730	+				+0.2
3,876,730	+				-1.0
3,876,736	+				+0.7
3,876,738	-				+0.2
3,876,738	-				-0.2
3,876,741	+				-0.3
3,876,744	-				-0.7
3,876,749	-				-0.5
3,876,775	+		GFF3838	0.11	+0.5
3,876,775	+		GFF3838	0.11	+0.4
3,876,796	+		GFF3838	0.14	+1.1
3,876,800	+		GFF3838	0.14	+0.2
3,876,807	+		GFF3838	0.15	-1.2
3,876,809	+		GFF3838	0.16	-0.5
3,876,809	+		GFF3838	0.16	+0.3
3,876,815	+		GFF3838	0.16	-1.2
3,876,817	-		GFF3838	0.16	-0.6
3,876,823	-		GFF3838	0.17	+0.3
3,876,827	-		GFF3838	0.18	-0.4
3,876,828	+		GFF3838	0.18	-1.0
3,876,830	+		GFF3838	0.18	-1.1
3,876,844	+		GFF3838	0.20	-0.2
3,876,850	+		GFF3838	0.20	-0.3
3,876,852	-		GFF3838	0.21	+0.3
3,876,858	-		GFF3838	0.21	+0.0
3,876,858	-		GFF3838	0.21	-1.0
3,876,858	-		GFF3838	0.21	+0.2
3,876,872	-		GFF3838	0.23	+0.2
3,876,880	+		GFF3838	0.24	-0.2
3,876,886	+		GFF3838	0.25	-0.5
3,876,913	+		GFF3838	0.28	-2.7
3,876,915	-		GFF3838	0.28	-1.2
3,876,939	+		GFF3838	0.31	-0.6
3,876,947	-		GFF3838	0.32	-0.7
3,876,959	-		GFF3838	0.34	-0.7
3,876,971	+		GFF3838	0.35	+0.5
3,876,976	-		GFF3838	0.36	+0.7
3,876,976	-		GFF3838	0.36	-0.2
3,876,990	+		GFF3838	0.37	+1.2
3,876,990	+		GFF3838	0.37	-0.6
3,876,996	+		GFF3838	0.38	-0.5
3,877,005	-		GFF3838	0.39	+0.5
3,877,014	+		GFF3838	0.40	-0.9
3,877,030	-		GFF3838	0.42	-0.1
3,877,044	-		GFF3838	0.44	+0.2
3,877,045	-		GFF3838	0.44	+1.0
3,877,053	+		GFF3838	0.45	-0.2
3,877,053	+		GFF3838	0.45	+1.1
3,877,076	-		GFF3838	0.48	+0.1
3,877,094	-		GFF3838	0.50	-0.8
3,877,096	+		GFF3838	0.50	+0.5
3,877,096	+		GFF3838	0.50	-0.9
3,877,104	-		GFF3838	0.51	-0.4
3,877,106	+		GFF3838	0.52	-1.4
3,877,106	+		GFF3838	0.52	-0.2
3,877,106	+		GFF3838	0.52	-1.0
3,877,114	-		GFF3838	0.52	-0.1
3,877,114	-		GFF3838	0.52	+0.7
3,877,114	-		GFF3838	0.52	-1.5
3,877,122	+		GFF3838	0.53	+0.2
3,877,122	+		GFF3838	0.53	-0.5
3,877,130	-		GFF3838	0.54	+0.8
3,877,139	+		GFF3838	0.56	-1.0
3,877,144	+		GFF3838	0.56	-0.8
3,877,144	+		GFF3838	0.56	-0.9
3,877,144	+		GFF3838	0.56	-1.3
3,877,145	-		GFF3838	0.56	-0.2
3,877,152	-		GFF3838	0.57	+0.3
3,877,154	+		GFF3838	0.57	-0.5
3,877,159	+		GFF3838	0.58	-0.2
3,877,162	-		GFF3838	0.58	-0.6
3,877,162	-		GFF3838	0.58	-1.6
3,877,192	-		GFF3838	0.62	-1.0
3,877,237	+		GFF3838	0.67	-0.4
3,877,247	+		GFF3838	0.69	+0.2
3,877,255	-		GFF3838	0.70	-1.8
3,877,343	+		GFF3838	0.80	+0.1
3,877,351	-		GFF3838	0.81	-0.3
3,877,351	-		GFF3838	0.81	-0.8
3,877,353	+		GFF3838	0.81	+0.5
3,877,369	+		GFF3838	0.83	+0.1
3,877,369	+		GFF3838	0.83	+0.0
3,877,374	+		GFF3838	0.84	+0.3
3,877,374	+		GFF3838	0.84	+1.8
3,877,379	+		GFF3838	0.85	+1.1
3,877,382	-		GFF3838	0.85	+0.3
3,877,382	-		GFF3838	0.85	-1.3
3,877,382	-		GFF3838	0.85	-1.1
3,877,390	+		GFF3838	0.86	-0.2
3,877,394	+		GFF3838	0.86	-0.4
3,877,398	-		GFF3838	0.87	-1.2
3,877,399	+		GFF3838	0.87	-1.4
3,877,402	-		GFF3838	0.87	-0.3
3,877,412	-		GFF3838	0.89	-1.7
3,877,412	-		GFF3838	0.89	+0.9
3,877,462	+				-0.1
3,877,463	+				+0.3
3,877,467	+				-0.0
3,877,467	+				-0.3
3,877,467	+				+1.8
3,877,467	+				+0.8
3,877,467	+				-0.9
3,877,473	+				+0.8
3,877,473	+				+0.9
3,877,475	-				+0.5
3,877,475	-				+0.6
3,877,475	-				-1.1
3,877,475	-				+0.7
3,877,475	-				+0.6
3,877,475	-				-0.3
3,877,481	-				+0.6
3,877,481	-				-0.7
3,877,489	+				-0.7
3,877,489	-				+0.8
3,877,489	-				-0.0
3,877,497	-				-0.1
3,877,499	+				-2.0
3,877,499	+				+0.1
3,877,507	-				-0.4
3,877,520	+				+0.8
3,877,520	+				+0.6
3,877,559	-				-0.4
3,877,559	-				-0.7
3,877,559	-				-2.7
3,877,559	-				-1.6
3,877,573	+				+0.1
3,877,573	+				-0.2
3,877,573	+				-0.1
3,877,573	+				-1.0
3,877,573	+				+0.6
3,877,573	+				+0.7
3,877,581	+				-0.2
3,877,581	-				-0.2
3,877,590	-				-0.4
3,877,590	-				-1.0
3,877,600	+				-0.7
3,877,617	+				-1.4
3,877,638	-				-2.6
3,877,643	-				-0.5
3,877,654	+		GFF3839	0.12	+1.6
3,877,659	+		GFF3839	0.13	-0.5
3,877,664	+		GFF3839	0.14	+1.1
3,877,664	+		GFF3839	0.14	-0.3
3,877,669	+		GFF3839	0.14	+0.4
3,877,671	+		GFF3839	0.15	-0.7
3,877,672	-		GFF3839	0.15	-0.8
3,877,676	+		GFF3839	0.16	-0.2
3,877,676	+		GFF3839	0.16	+0.4
3,877,677	-		GFF3839	0.16	+0.7
3,877,679	-		GFF3839	0.16	-0.2
3,877,684	-		GFF3839	0.17	+0.2
3,877,692	+		GFF3839	0.19	-0.1
3,877,697	-		GFF3839	0.20	-0.0
3,877,702	+		GFF3839	0.21	+1.1
3,877,702	+		GFF3839	0.21	-2.5
3,877,705	-		GFF3839	0.21	+0.6
3,877,733	-		GFF3839	0.26	-0.4
3,877,769	-		GFF3839	0.33	-0.1
3,877,770	+		GFF3839	0.33	-2.0
3,877,785	-		GFF3839	0.36	-0.0
3,877,785	-		GFF3839	0.36	+0.4
3,877,811	-		GFF3839	0.40	-1.6
3,877,854	+		GFF3839	0.48	-2.6
3,877,859	+		GFF3839	0.49	+0.2
3,877,862	-		GFF3839	0.50	+0.1
3,877,898	+		GFF3839	0.56	+1.3
3,877,939	+		GFF3839	0.64	+0.4
3,877,939	+		GFF3839	0.64	-0.2
3,877,939	+		GFF3839	0.64	+0.3
3,877,939	+		GFF3839	0.64	-1.0
3,877,939	+		GFF3839	0.64	-2.5
3,877,947	-		GFF3839	0.65	-0.1
3,877,962	-		GFF3839	0.68	+0.0
3,877,976	+		GFF3839	0.71	-1.0
3,877,985	+		GFF3839	0.72	+1.0
3,878,019	-		GFF3839	0.79	-0.2
3,878,019	-		GFF3839	0.79	-0.3
3,878,043	-		GFF3839	0.83	-1.4
3,878,070	-		GFF3839	0.88	-0.5
3,878,075	+		GFF3839	0.89	-0.9
3,878,099	-				-1.2
3,878,099	-				+0.6
3,878,105	+				+0.1
3,878,105	+				+0.9
3,878,113	-				-1.2
3,878,114	+				-1.1
3,878,114	+				+0.8
3,878,122	-				-1.6
3,878,122	-				-0.7
3,878,122	-				+0.1
3,878,122	-				-0.9
3,878,122	-				+0.4
3,878,122	-				+0.8
3,878,122	-				+0.6
3,878,122	-				-0.1
3,878,136	+				-0.6
3,878,136	+				+0.1
3,878,136	+				+1.2
3,878,143	-				-1.2
3,878,144	-				+0.2
3,878,144	-				-1.1
3,878,144	-				+0.5
3,878,144	-				-0.2
3,878,144	-				+0.1
3,878,144	-				-0.8
3,878,144	-				-2.2
3,878,188	+				+0.4
3,878,193	+				-1.6
3,878,193	+				-1.3
3,878,196	-				-1.9
3,878,200	-				-1.7
3,878,201	-				-1.5
3,878,218	+				-1.2
3,878,218	+				+0.1
3,878,262	+				-1.1
3,878,262	+				+0.6
3,878,263	+				-0.3
3,878,263	+				+0.5
3,878,263	+				-0.7
3,878,263	+				-1.5
3,878,263	+				-1.3
3,878,263	+				-1.5
3,878,263	+				-0.3
3,878,263	+				-1.9
3,878,268	+				-1.0
3,878,270	-		GFF3840	0.10	+0.8
3,878,271	-		GFF3840	0.11	-0.0
3,878,271	-		GFF3840	0.11	+0.8
3,878,271	-		GFF3840	0.11	+0.2
3,878,271	-		GFF3840	0.11	+0.7
3,878,271	-		GFF3840	0.11	-1.2
3,878,271	-		GFF3840	0.11	+0.0
3,878,271	-		GFF3840	0.11	-0.2
3,878,271	-		GFF3840	0.11	-0.0
3,878,271	-		GFF3840	0.11	-0.1
3,878,271	-		GFF3840	0.11	-1.9
3,878,271	-		GFF3840	0.11	-0.8
3,878,271	-		GFF3840	0.11	-0.1
3,878,271	-		GFF3840	0.11	+0.6
3,878,273	+		GFF3840	0.11	+1.4
3,878,273	+		GFF3840	0.11	+0.4
3,878,276	-		GFF3840	0.12	+0.3
3,878,281	-		GFF3840	0.13	-0.2
3,878,281	-		GFF3840	0.13	-0.4
3,878,281	-		GFF3840	0.13	+1.3
3,878,281	-		GFF3840	0.13	-1.0
3,878,295	+		GFF3840	0.16	-1.2
3,878,295	+		GFF3840	0.16	-0.2
3,878,295	+		GFF3840	0.16	+0.6
3,878,295	+		GFF3840	0.16	+0.2
3,878,295	+		GFF3840	0.16	+1.0
3,878,303	-		GFF3840	0.18	-0.4
3,878,303	-		GFF3840	0.18	-0.4
3,878,303	-		GFF3840	0.18	-0.2
3,878,303	-		GFF3840	0.18	-0.1
3,878,303	-		GFF3840	0.18	-0.1
3,878,303	-		GFF3840	0.18	+0.2
3,878,303	-		GFF3840	0.18	-0.8
3,878,316	+		GFF3840	0.21	-1.1
3,878,324	-		GFF3840	0.23	-0.2
3,878,353	+		GFF3840	0.29	-0.3
3,878,371	-		GFF3840	0.33	-1.4
3,878,371	-		GFF3840	0.33	-2.4
3,878,409	+		GFF3840	0.42	-0.0
3,878,444	-		GFF3840	0.50	-0.8
3,878,455	-		GFF3840	0.52	+0.8
3,878,480	-		GFF3840	0.58	-0.9
3,878,480	-		GFF3840	0.58	-0.2
3,878,496	+		GFF3840	0.61	-1.9
3,878,501	+		GFF3840	0.62	-2.4
3,878,506	+		GFF3840	0.64	-1.8
3,878,509	-		GFF3840	0.64	+0.3
3,878,515	+		GFF3840	0.66	+0.6
3,878,519	-		GFF3840	0.66	-0.3
3,878,519	-		GFF3840	0.66	-1.1
3,878,540	-		GFF3840	0.71	-0.4
3,878,552	-		GFF3840	0.74	-1.2
3,878,557	-		GFF3840	0.75	-1.0
3,878,557	-		GFF3840	0.75	-1.9
3,878,559	+		GFF3840	0.75	+0.9
3,878,560	+		GFF3840	0.76	+0.6
3,878,596	-		GFF3840	0.84	+0.8
3,878,598	+		GFF3840	0.84	-2.4
3,878,637	+				+0.3
3,878,637	+				+0.1
3,878,647	+				+0.3
3,878,655	-				+0.5
3,878,658	+				+0.0
3,878,666	-				-0.3
3,878,666	-				-0.6
3,878,666	-				-0.5
3,878,673	+				-0.0
3,878,681	+				-0.8
3,878,681	-				+1.4
3,878,709	-				-1.4
3,878,731	-				+0.0
3,878,731	-				-0.3
3,878,735	+				-0.9
3,878,752	+				+0.3
3,878,760	-				-0.2
3,878,794	+				-0.4
3,878,794	+				-0.6
3,878,794	+				-0.2
3,878,839	+				+0.1
3,878,839	+				-0.4
3,878,847	-				-0.3
3,878,847	-				+1.0
3,878,847	-				-0.2
3,878,858	+				-0.4
3,878,866	+				-1.7
3,878,866	+				+0.0
3,878,873	+				-1.5
3,878,873	-				+0.6
3,878,881	-				+0.2
3,878,882	-				-2.4
3,878,882	-				-1.0
3,878,892	+				-2.2
3,878,895	+				-1.0
3,878,899	+				-0.4
3,878,914	+				-0.8
3,878,934	+				-0.0
3,878,952	+				+0.8
3,878,959	-				-2.2
3,878,962	+				+1.4
3,878,984	-		GFF3841	0.10	-1.9
3,878,989	+		GFF3841	0.10	+1.0
3,878,997	-		GFF3841	0.11	+1.3
3,878,997	-		GFF3841	0.11	-0.1
3,878,997	-		GFF3841	0.11	-0.9
3,879,020	+		GFF3841	0.12	+0.4
3,879,020	+		GFF3841	0.12	-1.6
3,879,020	+		GFF3841	0.12	-0.1
3,879,020	+		GFF3841	0.12	+0.2
3,879,028	-		GFF3841	0.12	-0.6
3,879,028	-		GFF3841	0.12	+0.2
3,879,057	+		GFF3841	0.13	-1.0
3,879,057	+		GFF3841	0.13	+0.3
3,879,057	+		GFF3841	0.13	-0.6
3,879,057	+		GFF3841	0.13	-0.6
3,879,057	+		GFF3841	0.13	-0.2
3,879,065	-		GFF3841	0.13	+1.3
3,879,065	-		GFF3841	0.13	-0.9
3,879,103	+		GFF3841	0.15	-0.1
3,879,106	-		GFF3841	0.15	-0.4
3,879,127	+		GFF3841	0.16	+0.0