Strain Fitness in Sphingobium sp. HT1-2 around GFF3833

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,871,030	+				-1.7
3,871,032	+				-1.2
3,871,037	+				+0.4
3,871,064	-		GFF3831	0.10	-0.9
3,871,066	+		GFF3831	0.11	-1.1
3,871,074	-		GFF3831	0.16	-0.4
3,871,086	-		GFF3831	0.22	-0.9
3,871,086	-		GFF3831	0.22	+0.5
3,871,119	+		GFF3831	0.40	-0.3
3,871,220	-				-0.2
3,871,423	+		GFF3832	0.28	-0.4
3,871,486	+		GFF3832	0.37	+0.6
3,871,904	+				-0.0
3,871,998	-				-1.3
3,872,019	+				+1.4
3,872,019	+				-0.3
3,872,019	+				-0.1
3,872,022	-				+0.8
3,872,027	-				+0.9
3,872,027	-				-0.7
3,872,027	-				-0.4
3,872,029	+				-0.8
3,872,035	+				-0.9
3,872,037	-				+0.4
3,872,039	+				+1.2
3,872,043	-				-2.2
3,872,044	-				-1.8
3,872,048	+				-0.9
3,872,049	-				-1.1
3,872,049	-				-2.3
3,872,057	+				-1.9
3,872,075	-		GFF3833	0.11	-0.7
3,872,080	-		GFF3833	0.12	+0.4
3,872,081	-		GFF3833	0.12	-0.6
3,872,105	-		GFF3833	0.17	-1.2
3,872,113	+		GFF3833	0.19	-0.1
3,872,113	+		GFF3833	0.19	-0.7
3,872,113	+		GFF3833	0.19	-1.5
3,872,113	+		GFF3833	0.19	-0.6
3,872,121	-		GFF3833	0.21	-0.4
3,872,121	-		GFF3833	0.21	+0.2
3,872,121	-		GFF3833	0.21	+0.1
3,872,121	-		GFF3833	0.21	-1.4
3,872,121	-		GFF3833	0.21	+0.4
3,872,124	+		GFF3833	0.21	+1.7
3,872,131	+		GFF3833	0.23	-0.5
3,872,139	-		GFF3833	0.25	-2.2
3,872,139	-		GFF3833	0.25	+0.3
3,872,150	-		GFF3833	0.27	-0.0
3,872,170	+		GFF3833	0.32	-0.9
3,872,173	+		GFF3833	0.32	+0.3
3,872,178	-		GFF3833	0.34	-0.7
3,872,178	-		GFF3833	0.34	-0.5
3,872,192	+		GFF3833	0.37	-1.7
3,872,212	+		GFF3833	0.41	+0.5
3,872,213	+		GFF3833	0.41	-0.4
3,872,223	+		GFF3833	0.44	-0.1
3,872,224	+		GFF3833	0.44	+0.3
3,872,224	+		GFF3833	0.44	+0.3
3,872,225	-		GFF3833	0.44	+0.7
3,872,231	-		GFF3833	0.45	+0.7
3,872,232	-		GFF3833	0.46	+0.0
3,872,232	-		GFF3833	0.46	-1.9
3,872,251	-		GFF3833	0.50	-0.5
3,872,251	-		GFF3833	0.50	+0.6
3,872,251	-		GFF3833	0.50	+0.6
3,872,258	+		GFF3833	0.51	-0.3
3,872,258	+		GFF3833	0.51	-0.6
3,872,262	+		GFF3833	0.52	-1.7
3,872,263	+		GFF3833	0.53	+0.8
3,872,263	+		GFF3833	0.53	-0.0
3,872,263	+		GFF3833	0.53	+0.9
3,872,266	-		GFF3833	0.53	+0.7
3,872,266	-		GFF3833	0.53	-0.9
3,872,266	-		GFF3833	0.53	-0.7
3,872,266	-		GFF3833	0.53	+0.3
3,872,268	+		GFF3833	0.54	+0.6
3,872,271	-		GFF3833	0.54	-0.4
3,872,276	-		GFF3833	0.55	-1.7
3,872,278	+		GFF3833	0.56	+0.3
3,872,281	-		GFF3833	0.57	+0.8
3,872,286	-		GFF3833	0.58	+0.8
3,872,290	+		GFF3833	0.59	+1.0
3,872,295	+		GFF3833	0.60	+0.7
3,872,296	+		GFF3833	0.60	-1.1
3,872,298	-		GFF3833	0.60	+0.1
3,872,298	-		GFF3833	0.60	+1.0
3,872,303	-		GFF3833	0.62	+0.5
3,872,391	+		GFF3833	0.81	+0.2
3,872,391	+		GFF3833	0.81	-0.7
3,872,391	+		GFF3833	0.81	-0.2
3,872,397	-		GFF3833	0.83	-0.5
3,872,399	-		GFF3833	0.83	+0.7
3,872,407	+		GFF3833	0.85	+1.0
3,872,409	+		GFF3833	0.85	-1.8
3,872,409	+		GFF3833	0.85	-2.5
3,872,409	+		GFF3833	0.85	-1.8
3,872,417	-		GFF3833	0.87	-1.7
3,872,417	-		GFF3833	0.87	-0.4
3,872,417	-		GFF3833	0.87	-0.4
3,872,417	-		GFF3833	0.87	+0.1
3,872,427	+		GFF3833	0.89	+1.5
3,872,427	+		GFF3833	0.89	+0.2
3,872,430	-				-0.4
3,872,435	-				+0.3
3,872,436	+				+0.2
3,872,440	-				-0.7
3,872,446	+				-2.6
3,872,446	+				-0.5
3,872,446	+				+0.3
3,872,456	+				-1.3
3,872,456	+				-1.1
3,872,456	+				-0.1
3,872,456	+				+0.2
3,872,456	+				+0.2
3,872,456	+				-0.1
3,872,456	+				-0.2
3,872,456	+				+0.1
3,872,456	+				+0.2
3,872,456	+				-2.7
3,872,456	+				-3.3
3,872,456	+				-1.1
3,872,456	+				+0.8
3,872,456	+				-0.1
3,872,456	+				+0.7
3,872,456	+				+0.1
3,872,464	-				-0.4
3,872,464	-				+0.6
3,872,464	-				-0.4
3,872,464	-				+0.1
3,872,464	-				+0.5
3,872,464	-				+0.2
3,872,464	-				+0.6
3,872,464	-				-1.1
3,872,464	-				+0.4
3,872,464	-				-0.0
3,872,464	-				-2.7
3,872,464	-				-0.1
3,872,464	-				-1.2
3,872,464	-				+1.2
3,872,464	-				-1.4
3,872,464	-				-1.4
3,872,464	-				-1.1
3,872,464	-				-1.1
3,872,464	-				+0.5
3,872,466	+				-1.3
3,872,470	+				-0.1
3,872,476	+				+0.4
3,872,476	+				+0.5
3,872,480	+				-1.1
3,872,481	+				-1.1
3,872,481	+				+1.1
3,872,481	+				-0.2
3,872,481	+				+0.3
3,872,483	+				+0.4
3,872,489	-				+0.1
3,872,489	-				-0.1
3,872,489	-				-0.2
3,872,489	-				+0.7
3,872,489	-				-1.4
3,872,489	-				-0.3
3,872,489	-				-2.2
3,872,503	-				+0.2
3,872,527	+				-0.6
3,872,527	+				+1.2
3,872,527	+				-2.4
3,872,529	+				-0.6
3,872,533	+				+1.3
3,872,562	-				-0.5
3,872,574	-				+1.5
3,872,575	-				-0.7
3,872,608	-				-0.0
3,872,611	+				+0.5
3,872,611	+				-1.1
3,872,611	+				-0.7
3,872,619	-				-0.2
3,872,619	-				+0.3
3,872,619	-				-0.3
3,872,619	-				-0.6
3,872,619	-				+1.5
3,872,619	-				-0.4
3,872,619	-				-0.3
3,872,619	-				-1.2
3,872,621	+				+0.3
3,872,625	+				+0.2
3,872,643	+				-1.0
3,872,643	+				-0.6
3,872,643	+				+0.1
3,872,651	-				+0.1
3,872,651	-				-0.4
3,872,664	-				-1.4
3,872,669	+				-0.2
3,872,669	+				-1.6
3,872,669	+				-0.9
3,872,669	+				-0.9
3,872,669	+				-1.4
3,872,677	-				-0.8
3,872,677	-				+0.9
3,872,677	-				+0.9
3,872,677	-				-1.2
3,872,681	+				+0.6
3,872,681	+				+0.7
3,872,681	+				-0.6
3,872,689	-				+0.3
3,872,689	-				+0.1
3,872,689	-				+0.5
3,872,689	-				+0.8
3,872,689	-				-0.3
3,872,691	+				+1.0
3,872,699	-				-0.7
3,872,700	-				-0.7
3,872,706	-				+0.6
3,872,717	+				-1.2
3,872,717	+				-0.0
3,872,726	-				+0.7
3,872,726	-				+0.3
3,872,729	+				-0.1
3,872,730	+				-0.1
3,872,730	+				-1.4
3,872,730	+				-0.5
3,872,730	+				+0.6
3,872,730	+				-0.8
3,872,737	+				-0.6
3,872,737	+				-1.4
3,872,738	-				-0.9
3,872,738	-				-0.4
3,872,738	-				-1.2
3,872,738	-				-0.2
3,872,738	-				-1.9
3,872,738	-				+0.1
3,872,738	-				-0.9
3,872,745	+				-1.2
3,872,753	-				+0.9
3,872,756	+				+1.6
3,872,771	+				+0.5
3,872,771	+				+0.3
3,872,771	+				-0.6
3,872,777	-				-0.5
3,872,779	-				-1.2
3,872,779	-				-2.4
3,872,784	-				-3.1
3,872,792	-				+0.0
3,872,822	-				+0.6
3,872,829	-				+0.2
3,872,832	+				-1.8
3,872,838	+				-1.2
3,872,838	+				-1.4
3,872,838	+				-0.5
3,872,846	-				-0.0
3,872,855	-				-0.5
3,872,859	-				-0.8
3,872,861	+				+1.0
3,872,862	+				-0.7
3,872,893	+				-0.6
3,872,898	+				+0.3
3,872,898	+				-0.1
3,872,898	+				-0.7
3,872,898	-				+0.1
3,872,899	-				-0.8
3,872,903	+				-0.8
3,872,903	+				-2.7
3,872,903	+				-0.4
3,872,906	-				+0.1
3,872,908	+				-0.3
3,872,911	-				-0.4
3,872,912	-				-1.2
3,872,914	+				-1.6
3,872,916	-				+1.8
3,872,916	-				-0.6
3,872,923	+				-0.6
3,872,923	+				+0.5
3,872,926	-				-0.0
3,872,942	+				-2.1
3,872,947	+				-0.2
3,872,952	+				+1.1
3,872,952	+				+0.3
3,872,952	+				-1.4
3,872,956	+				+1.1
3,872,960	-				-1.3
3,872,960	-				-0.2
3,872,960	-				-1.6
3,872,960	-				+0.5
3,872,963	+				-0.0
3,872,964	-				-1.6
3,872,972	-				-0.6
3,872,976	-				-2.4
3,872,977	-				-1.7
3,872,977	-				+0.1
3,873,022	+		GFF3834	0.13	+0.8
3,873,048	+		GFF3834	0.15	-0.3
3,873,066	+		GFF3834	0.17	-0.3
3,873,074	+		GFF3834	0.18	+0.6
3,873,074	+		GFF3834	0.18	-1.6
3,873,074	+		GFF3834	0.18	-1.4
3,873,074	+		GFF3834	0.18	-0.2
3,873,074	+		GFF3834	0.18	-2.0
3,873,074	+		GFF3834	0.18	-1.3
3,873,074	+		GFF3834	0.18	+0.4
3,873,074	+		GFF3834	0.18	+0.4
3,873,074	+		GFF3834	0.18	-0.7
3,873,082	-		GFF3834	0.19	+1.0
3,873,082	-		GFF3834	0.19	-0.6
3,873,082	-		GFF3834	0.19	-0.2
3,873,082	-		GFF3834	0.19	-0.2
3,873,082	-		GFF3834	0.19	-0.0
3,873,082	-		GFF3834	0.19	-0.5
3,873,082	-		GFF3834	0.19	-1.0
3,873,082	-		GFF3834	0.19	-0.8
3,873,082	-		GFF3834	0.19	-1.5
3,873,098	-		GFF3834	0.20	+1.4
3,873,163	-		GFF3834	0.27	-0.7
3,873,176	+		GFF3834	0.28	+0.3
3,873,197	+		GFF3834	0.31	-1.5
3,873,199	+		GFF3834	0.31	-0.2
3,873,207	-		GFF3834	0.32	+1.0
3,873,256	+		GFF3834	0.37	-1.5
3,873,277	+		GFF3834	0.39	-0.4
3,873,277	+		GFF3834	0.39	-0.2
3,873,280	-		GFF3834	0.39	-1.8
3,873,297	+		GFF3834	0.41	+0.6
3,873,303	+		GFF3834	0.41	-0.6
3,873,313	+		GFF3834	0.42	-1.5
3,873,336	+		GFF3834	0.45	+1.2
3,873,336	+		GFF3834	0.45	+0.8
3,873,344	-		GFF3834	0.46	-2.6
3,873,365	-		GFF3834	0.48	-0.1
3,873,368	+		GFF3834	0.48	-0.8
3,873,370	-		GFF3834	0.48	-1.2
3,873,397	-		GFF3834	0.51	-0.9
3,873,402	-		GFF3834	0.52	-0.2
3,873,412	-		GFF3834	0.53	+0.4
3,873,417	+		GFF3834	0.53	-1.2
3,873,449	+		GFF3834	0.56	+1.1
3,873,454	+		GFF3834	0.57	-1.5
3,873,457	-		GFF3834	0.57	-0.4
3,873,457	-		GFF3834	0.57	+1.1
3,873,467	-		GFF3834	0.58	+0.8
3,873,467	-		GFF3834	0.58	-0.6
3,873,474	+		GFF3834	0.59	-0.2