Strain Fitness in Sphingobium sp. HT1-2 around GFF3829

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,869,118	-		GFF3828	0.55	-0.7
3,869,133	-		GFF3828	0.56	+0.1
3,869,141	+		GFF3828	0.56	+0.5
3,869,165	+		GFF3828	0.58	-1.1
3,869,165	+		GFF3828	0.58	-1.0
3,869,227	-		GFF3828	0.61	-0.1
3,869,250	-		GFF3828	0.62	+0.9
3,869,252	-		GFF3828	0.62	-1.5
3,869,261	-		GFF3828	0.63	-1.9
3,869,279	+		GFF3828	0.64	-1.5
3,869,282	-		GFF3828	0.64	+0.5
3,869,284	+		GFF3828	0.64	-0.0
3,869,287	-		GFF3828	0.64	+0.3
3,869,287	-		GFF3828	0.64	-0.4
3,869,287	-		GFF3828	0.64	-0.6
3,869,287	-		GFF3828	0.64	+0.2
3,869,287	-		GFF3828	0.64	-1.1
3,869,287	-		GFF3828	0.64	+0.1
3,869,289	+		GFF3828	0.64	-1.1
3,869,289	+		GFF3828	0.64	+0.5
3,869,289	+		GFF3828	0.64	-1.5
3,869,289	+		GFF3828	0.64	-0.3
3,869,289	+		GFF3828	0.64	-0.2
3,869,289	+		GFF3828	0.64	-1.5
3,869,289	+		GFF3828	0.64	-0.0
3,869,289	+		GFF3828	0.64	-1.2
3,869,289	+		GFF3828	0.64	-0.8
3,869,295	+		GFF3828	0.65	+0.5
3,869,297	-		GFF3828	0.65	-1.0
3,869,297	-		GFF3828	0.65	-1.2
3,869,297	-		GFF3828	0.65	-1.7
3,869,297	-		GFF3828	0.65	-1.3
3,869,297	-		GFF3828	0.65	-1.2
3,869,297	-		GFF3828	0.65	-0.2
3,869,299	+		GFF3828	0.65	-1.4
3,869,305	+		GFF3828	0.65	+0.4
3,869,349	+		GFF3828	0.68	-0.8
3,869,370	+		GFF3828	0.69	+0.8
3,869,386	-		GFF3828	0.70	+0.3
3,869,403	-		GFF3828	0.71	+1.3
3,869,412	+		GFF3828	0.71	+0.5
3,869,434	+		GFF3828	0.72	+0.2
3,869,442	-		GFF3828	0.73	-0.2
3,869,452	-		GFF3828	0.73	+0.7
3,869,457	-		GFF3828	0.74	-0.2
3,869,487	+		GFF3828	0.75	-2.2
3,869,502	+		GFF3828	0.76	-0.6
3,869,504	+		GFF3828	0.76	-2.0
3,869,504	+		GFF3828	0.76	-1.8
3,869,505	-		GFF3828	0.76	+0.0
3,869,513	-		GFF3828	0.77	+0.1
3,869,521	+		GFF3828	0.77	-0.2
3,869,527	+		GFF3828	0.77	-2.1
3,869,561	+		GFF3828	0.79	+0.6
3,869,569	-		GFF3828	0.80	-1.6
3,869,569	-		GFF3828	0.80	-0.0
3,869,569	-		GFF3828	0.80	+0.8
3,869,575	-		GFF3828	0.80	-0.6
3,869,577	+		GFF3828	0.80	-2.6
3,869,587	+		GFF3828	0.81	+0.4
3,869,587	+		GFF3828	0.81	+0.4
3,869,590	-		GFF3828	0.81	-0.2
3,869,590	-		GFF3828	0.81	-1.8
3,869,595	-		GFF3828	0.81	-0.7
3,869,595	-		GFF3828	0.81	-1.0
3,869,606	+		GFF3828	0.82	-1.9
3,869,606	-		GFF3828	0.82	-1.3
3,869,609	+		GFF3828	0.82	-0.0
3,869,615	-		GFF3828	0.82	-0.7
3,869,616	-		GFF3828	0.82	+0.1
3,869,670	-		GFF3828	0.85	-1.7
3,869,717	+		GFF3828	0.88	-0.8
3,869,717	+		GFF3828	0.88	+0.6
3,869,772	-				+0.0
3,869,772	-				-0.9
3,869,772	-				-0.9
3,869,812	-				-1.3
3,869,819	+				-1.4
3,869,827	+				+0.0
3,869,830	-				+0.0
3,869,835	-				+0.4
3,869,835	-				-0.6
3,869,840	+				-0.5
3,869,848	-				+0.0
3,869,850	+				-0.2
3,869,850	+				+0.1
3,869,850	+				+0.8
3,869,858	-				-1.4
3,869,858	-				+1.2
3,869,860	+				+0.4
3,869,860	+				-0.2
3,869,868	-				-0.0
3,869,868	-				-0.8
3,869,875	-				-0.2
3,869,896	+				-1.8
3,869,899	-				-0.6
3,869,899	-				-0.7
3,870,007	+				-0.6
3,870,047	+				-0.7
3,870,104	-				+1.2
3,870,125	+				+0.2
3,870,125	+				-1.2
3,870,125	+				-1.7
3,870,133	-		GFF3829	0.11	+1.0
3,870,133	-		GFF3829	0.11	+0.3
3,870,133	-		GFF3829	0.11	-0.6
3,870,149	+		GFF3829	0.14	+0.6
3,870,154	+		GFF3829	0.15	+0.6
3,870,157	-		GFF3829	0.16	-0.5
3,870,162	-		GFF3829	0.17	-0.2
3,870,166	+		GFF3829	0.17	-0.7
3,870,174	-		GFF3829	0.19	-0.8
3,870,181	-		GFF3829	0.20	-1.9
3,870,199	+		GFF3829	0.24	+0.3
3,870,200	-		GFF3829	0.24	+0.8
3,870,204	+		GFF3829	0.25	+0.1
3,870,205	-		GFF3829	0.25	-0.5
3,870,207	+		GFF3829	0.26	-0.8
3,870,207	-		GFF3829	0.26	+0.3
3,870,207	-		GFF3829	0.26	-0.9
3,870,207	-		GFF3829	0.26	-0.5
3,870,212	-		GFF3829	0.27	-0.0
3,870,212	-		GFF3829	0.27	-1.9
3,870,222	+		GFF3829	0.29	-0.2
3,870,237	-		GFF3829	0.32	+0.1
3,870,265	+		GFF3829	0.37	-0.5
3,870,265	+		GFF3829	0.37	-0.7
3,870,273	-		GFF3829	0.39	-0.5
3,870,273	-		GFF3829	0.39	-1.5
3,870,273	-		GFF3829	0.39	+0.1
3,870,288	+		GFF3829	0.42	+0.8
3,870,288	+		GFF3829	0.42	-1.5
3,870,288	+		GFF3829	0.42	-0.1
3,870,288	+		GFF3829	0.42	-0.7
3,870,293	+		GFF3829	0.43	+0.6
3,870,303	+		GFF3829	0.45	-1.6
3,870,303	+		GFF3829	0.45	+0.9
3,870,311	-		GFF3829	0.47	-0.6
3,870,316	-		GFF3829	0.48	+0.8
3,870,316	-		GFF3829	0.48	-1.1
3,870,328	-		GFF3829	0.50	-1.1
3,870,338	+		GFF3829	0.52	+0.3
3,870,346	-		GFF3829	0.54	-1.1
3,870,350	+		GFF3829	0.55	-0.7
3,870,351	-		GFF3829	0.55	+1.7
3,870,357	+		GFF3829	0.56	+0.2
3,870,362	+		GFF3829	0.57	-0.9
3,870,362	+		GFF3829	0.57	-0.7
3,870,362	+		GFF3829	0.57	-0.4
3,870,362	+		GFF3829	0.57	+0.5
3,870,362	+		GFF3829	0.57	-1.9
3,870,365	-		GFF3829	0.58	-0.4
3,870,370	-		GFF3829	0.59	-0.4
3,870,370	-		GFF3829	0.59	+0.1
3,870,370	-		GFF3829	0.59	+0.2
3,870,370	-		GFF3829	0.59	-1.8
3,870,421	+		GFF3829	0.69	-0.3
3,870,429	+		GFF3829	0.71	-0.3
3,870,437	+		GFF3829	0.72	+0.8
3,870,447	+		GFF3829	0.74	+0.4
3,870,477	-		GFF3829	0.80	+0.6
3,870,507	+		GFF3829	0.86	-0.6
3,870,522	+		GFF3829	0.89	-0.6
3,870,530	-				-0.2
3,870,532	+				-0.4
3,870,538	+				-1.0
3,870,540	-				-1.1
3,870,543	+				-0.0
3,870,551	-				+0.5
3,870,551	-				+0.6
3,870,559	+				+0.3
3,870,559	+				-1.0
3,870,561	-				+1.5
3,870,567	-				+1.0
3,870,568	-				-0.4
3,870,602	+				-1.2
3,870,602	+				-0.2
3,870,602	+				-0.6
3,870,602	+				-0.6
3,870,602	+				-0.7
3,870,602	+				-1.1
3,870,602	+				+0.3
3,870,602	+				-0.0
3,870,602	+				+0.1
3,870,602	+				-0.4
3,870,602	+				+0.3
3,870,602	+				-0.4
3,870,602	+				+1.1
3,870,602	+				-1.4
3,870,602	+				+0.6
3,870,602	+				-1.2
3,870,602	+				+0.3
3,870,602	+				+0.1
3,870,602	+				+0.1
3,870,602	+				+0.4
3,870,602	+				-0.9
3,870,602	+				-1.4
3,870,602	+				-0.2
3,870,602	+				+0.2
3,870,602	+				-0.2
3,870,602	+				+0.4
3,870,610	-		GFF3830	0.11	-1.1
3,870,610	-		GFF3830	0.11	+0.7
3,870,610	-		GFF3830	0.11	-0.5
3,870,610	-		GFF3830	0.11	-0.2
3,870,610	-		GFF3830	0.11	-0.7
3,870,610	-		GFF3830	0.11	+0.1
3,870,610	-		GFF3830	0.11	-2.0
3,870,610	-		GFF3830	0.11	-0.4
3,870,610	-		GFF3830	0.11	+0.0
3,870,610	-		GFF3830	0.11	-0.6
3,870,610	-		GFF3830	0.11	-0.9
3,870,610	-		GFF3830	0.11	-0.2
3,870,610	-		GFF3830	0.11	+1.1
3,870,610	-		GFF3830	0.11	-0.9
3,870,610	-		GFF3830	0.11	-1.2
3,870,610	-		GFF3830	0.11	-0.4
3,870,610	-		GFF3830	0.11	+0.1
3,870,610	-		GFF3830	0.11	-0.4
3,870,610	-		GFF3830	0.11	-2.1
3,870,610	-		GFF3830	0.11	+1.7
3,870,610	-		GFF3830	0.11	-1.9
3,870,610	-		GFF3830	0.11	+0.1
3,870,610	-		GFF3830	0.11	-1.2
3,870,610	-		GFF3830	0.11	+0.3
3,870,624	-		GFF3830	0.15	-0.1
3,870,734	+		GFF3830	0.47	-0.6
3,870,744	+		GFF3830	0.50	-1.0
3,870,744	+		GFF3830	0.50	-2.5
3,870,744	+		GFF3830	0.50	-1.7
3,870,744	+		GFF3830	0.50	-0.4
3,870,744	+		GFF3830	0.50	+0.4
3,870,752	-		GFF3830	0.52	-0.9
3,870,752	-		GFF3830	0.52	-0.5
3,870,831	-		GFF3830	0.75	-0.1
3,870,842	+		GFF3830	0.78	-0.8
3,870,849	+		GFF3830	0.80	-2.1
3,870,849	+		GFF3830	0.80	+0.4
3,870,850	-		GFF3830	0.80	+0.4
3,870,857	-		GFF3830	0.82	-0.3
3,870,865	+		GFF3830	0.84	-0.7
3,870,873	-		GFF3830	0.87	-1.2
3,870,875	+		GFF3830	0.87	+0.3
3,870,906	-				+0.7
3,870,919	-				-0.0
3,870,926	-				+0.1
3,870,941	+				-0.9
3,870,948	+				+0.2
3,870,948	+				+0.6
3,870,948	+				-1.7
3,870,948	+				-1.6
3,870,948	+				-1.0
3,870,948	+				+0.4
3,870,948	+				+1.0
3,870,948	+				-0.8
3,870,948	+				+0.8
3,870,954	+				-1.3
3,870,956	-				+0.6
3,870,956	-				-0.4
3,870,956	-				-0.5
3,870,956	-				+0.2
3,870,956	-				-0.7
3,870,962	-				+0.1
3,871,019	+				-3.2
3,871,030	+				-1.7
3,871,032	+				-1.2
3,871,037	+				+0.4
3,871,064	-		GFF3831	0.10	-0.9
3,871,066	+		GFF3831	0.11	-1.1
3,871,074	-		GFF3831	0.16	-0.4
3,871,086	-		GFF3831	0.22	-0.9
3,871,086	-		GFF3831	0.22	+0.5
3,871,119	+		GFF3831	0.40	-0.3
3,871,220	-				-0.2
3,871,423	+		GFF3832	0.28	-0.4
3,871,486	+		GFF3832	0.37	+0.6