Strain Fitness in Sphingobium sp. HT1-2 around GFF3824

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,863,679	-		GFF3822	0.88	-2.1
3,863,679	-		GFF3822	0.88	-1.4
3,863,692	+		GFF3822	0.89	-0.5
3,863,692	+		GFF3822	0.89	-0.1
3,863,693	+		GFF3822	0.89	+0.2
3,863,700	-		GFF3822	0.89	-0.1
3,863,700	-		GFF3822	0.89	-2.3
3,863,700	-		GFF3822	0.89	-1.6
3,863,714	-				-0.4
3,863,728	+				-0.8
3,863,773	-				+0.2
3,863,794	+				-1.2
3,863,794	+				-1.1
3,863,794	+				-1.4
3,863,802	-				-0.4
3,863,802	-				+0.3
3,863,802	-				-0.5
3,863,802	-				-0.5
3,863,804	+				-0.2
3,863,808	-				+0.1
3,863,809	+				+0.0
3,863,809	+				+0.6
3,863,809	+				+1.0
3,863,809	+				-1.4
3,863,817	-				+0.3
3,863,817	-				-1.1
3,863,817	-				+1.0
3,863,817	-				+0.6
3,863,817	-				-1.5
3,863,817	-				-0.0
3,863,817	-				+0.0
3,863,822	-				-0.6
3,863,846	-				+0.8
3,863,864	-				-1.6
3,863,868	+				-1.2
3,863,868	+				+0.3
3,863,869	+				-1.1
3,863,869	+				-1.9
3,863,907	-				+0.8
3,863,907	-				-0.1
3,863,948	-		GFF3823	0.15	+0.9
3,863,948	-		GFF3823	0.15	-1.6
3,863,970	-		GFF3823	0.18	-0.9
3,863,989	+		GFF3823	0.21	-1.4
3,863,997	-		GFF3823	0.22	-1.8
3,863,997	-		GFF3823	0.22	-1.6
3,864,016	+		GFF3823	0.25	-0.9
3,864,024	-		GFF3823	0.26	+0.3
3,864,024	-		GFF3823	0.26	+0.1
3,864,029	+		GFF3823	0.27	-0.4
3,864,058	+		GFF3823	0.31	-1.9
3,864,099	+		GFF3823	0.37	-0.6
3,864,124	-		GFF3823	0.40	-1.3
3,864,136	+		GFF3823	0.42	-0.2
3,864,177	+		GFF3823	0.48	+0.0
3,864,185	-		GFF3823	0.49	-0.1
3,864,192	+		GFF3823	0.50	-0.4
3,864,192	+		GFF3823	0.50	+0.6
3,864,192	+		GFF3823	0.50	-0.8
3,864,192	+		GFF3823	0.50	+0.1
3,864,192	+		GFF3823	0.50	-1.4
3,864,200	-		GFF3823	0.51	-1.2
3,864,200	-		GFF3823	0.51	-0.8
3,864,200	-		GFF3823	0.51	-0.5
3,864,200	-		GFF3823	0.51	-0.2
3,864,200	-		GFF3823	0.51	-0.7
3,864,202	+		GFF3823	0.51	-1.3
3,864,205	-		GFF3823	0.52	-0.6
3,864,238	+		GFF3823	0.56	+0.2
3,864,246	-		GFF3823	0.57	+0.8
3,864,246	-		GFF3823	0.57	-0.4
3,864,267	+		GFF3823	0.60	-0.7
3,864,270	-		GFF3823	0.61	-1.4
3,864,270	-		GFF3823	0.61	-0.8
3,864,270	-		GFF3823	0.61	+0.6
3,864,270	-		GFF3823	0.61	-0.3
3,864,270	-		GFF3823	0.61	-0.3
3,864,273	+		GFF3823	0.61	-0.9
3,864,288	-		GFF3823	0.63	+0.8
3,864,299	+		GFF3823	0.65	-2.3
3,864,299	+		GFF3823	0.65	-1.2
3,864,307	-		GFF3823	0.66	-1.7
3,864,307	-		GFF3823	0.66	+0.3
3,864,307	-		GFF3823	0.66	-1.6
3,864,307	-		GFF3823	0.66	-0.3
3,864,346	+		GFF3823	0.72	+0.7
3,864,356	+		GFF3823	0.73	-0.4
3,864,356	+		GFF3823	0.73	+1.0
3,864,356	+		GFF3823	0.73	-2.4
3,864,356	+		GFF3823	0.73	+0.0
3,864,356	+		GFF3823	0.73	+1.1
3,864,356	+		GFF3823	0.73	-2.4
3,864,364	-		GFF3823	0.74	-2.8
3,864,364	-		GFF3823	0.74	-0.2
3,864,364	-		GFF3823	0.74	-1.4
3,864,364	-		GFF3823	0.74	-0.1
3,864,364	-		GFF3823	0.74	-0.9
3,864,364	-		GFF3823	0.74	-0.8
3,864,379	+		GFF3823	0.76	+0.2
3,864,395	+		GFF3823	0.79	-0.9
3,864,395	+		GFF3823	0.79	-1.5
3,864,403	-		GFF3823	0.80	-1.0
3,864,412	+		GFF3823	0.81	+0.9
3,864,436	+		GFF3823	0.84	-0.7
3,864,444	-		GFF3823	0.86	+0.2
3,864,448	+		GFF3823	0.86	-1.2
3,864,448	+		GFF3823	0.86	-1.8
3,864,448	+		GFF3823	0.86	+0.1
3,864,448	+		GFF3823	0.86	-0.8
3,864,448	+		GFF3823	0.86	-0.0
3,864,448	+		GFF3823	0.86	+0.1
3,864,448	+		GFF3823	0.86	+0.5
3,864,448	+		GFF3823	0.86	-1.0
3,864,448	+		GFF3823	0.86	+1.1
3,864,448	+		GFF3823	0.86	+0.8
3,864,448	+		GFF3823	0.86	-1.0
3,864,448	+		GFF3823	0.86	+1.6
3,864,448	+		GFF3823	0.86	-0.0
3,864,448	+		GFF3823	0.86	-0.5
3,864,448	+		GFF3823	0.86	-0.8
3,864,448	+		GFF3823	0.86	-1.5
3,864,448	+		GFF3823	0.86	-2.1
3,864,448	+		GFF3823	0.86	+0.1
3,864,448	+		GFF3823	0.86	+0.1
3,864,448	+		GFF3823	0.86	-1.8
3,864,448	+		GFF3823	0.86	-1.7
3,864,448	+		GFF3823	0.86	-1.5
3,864,448	+		GFF3823	0.86	-0.2
3,864,448	+		GFF3823	0.86	-0.3
3,864,448	+		GFF3823	0.86	+0.9
3,864,448	+		GFF3823	0.86	-1.9
3,864,448	+		GFF3823	0.86	-1.8
3,864,450	+		GFF3823	0.86	-1.6
3,864,451	-		GFF3823	0.87	-2.0
3,864,451	-		GFF3823	0.87	-1.0
3,864,456	-		GFF3823	0.87	-1.2
3,864,456	-		GFF3823	0.87	-1.9
3,864,456	-		GFF3823	0.87	+1.3
3,864,456	-		GFF3823	0.87	+0.4
3,864,456	-		GFF3823	0.87	-0.3
3,864,456	-		GFF3823	0.87	+1.1
3,864,456	-		GFF3823	0.87	+0.4
3,864,456	-		GFF3823	0.87	-1.6
3,864,456	-		GFF3823	0.87	-1.7
3,864,456	-		GFF3823	0.87	-2.9
3,864,456	-		GFF3823	0.87	-0.4
3,864,456	-		GFF3823	0.87	-1.9
3,864,456	-		GFF3823	0.87	+0.4
3,864,456	-		GFF3823	0.87	-0.8
3,864,456	-		GFF3823	0.87	-0.1
3,864,456	-		GFF3823	0.87	-2.6
3,864,456	-		GFF3823	0.87	-0.4
3,864,456	-		GFF3823	0.87	+0.6
3,864,456	-		GFF3823	0.87	-0.1
3,864,456	-		GFF3823	0.87	-0.4
3,864,456	-		GFF3823	0.87	+1.0
3,864,456	-		GFF3823	0.87	-1.2
3,864,456	-		GFF3823	0.87	-0.3
3,864,456	-		GFF3823	0.87	+0.5
3,864,456	-		GFF3823	0.87	+0.2
3,864,456	-		GFF3823	0.87	-2.2
3,864,456	-		GFF3823	0.87	-0.4
3,864,456	-		GFF3823	0.87	+0.3
3,864,456	-		GFF3823	0.87	-0.2
3,864,456	-		GFF3823	0.87	+0.1
3,864,456	-		GFF3823	0.87	-1.7
3,864,467	+		GFF3823	0.89	-1.9
3,864,468	+		GFF3823	0.89	-0.5
3,864,469	+		GFF3823	0.89	-3.1
3,864,491	+				-1.3
3,864,498	+				-0.7
3,864,499	-				+0.8
3,864,517	+				-1.7
3,864,525	-				-0.6
3,864,527	+				-1.2
3,864,541	+				+1.3
3,864,541	+				-0.5
3,864,560	-				-0.0
3,864,574	-				-0.6
3,864,589	+				-0.5
3,864,589	+				-2.1
3,864,589	+				+0.4
3,864,589	+				-1.7
3,864,589	+				-0.2
3,864,597	-				+0.2
3,864,597	-				+1.2
3,864,668	+				-0.9
3,864,677	-				-0.2
3,864,700	+		GFF3824	0.24	-0.0
3,864,707	+		GFF3824	0.30	+1.1
3,864,707	+		GFF3824	0.30	-0.0
3,864,707	+		GFF3824	0.30	-0.7
3,864,707	+		GFF3824	0.30	-1.6
3,864,707	+		GFF3824	0.30	-0.2
3,864,707	+		GFF3824	0.30	-0.6
3,864,707	+		GFF3824	0.30	-2.1
3,864,707	+		GFF3824	0.30	-0.2
3,864,707	+		GFF3824	0.30	-1.2
3,864,707	+		GFF3824	0.30	+1.6
3,864,707	+		GFF3824	0.30	-0.7
3,864,708	+		GFF3824	0.31	+1.3
3,864,708	-		GFF3824	0.31	+0.7
3,864,715	-		GFF3824	0.37	-0.3
3,864,715	-		GFF3824	0.37	+0.2
3,864,715	-		GFF3824	0.37	-0.1
3,864,715	-		GFF3824	0.37	-0.4
3,864,715	-		GFF3824	0.37	+0.4
3,864,715	-		GFF3824	0.37	-0.0
3,864,715	-		GFF3824	0.37	-0.1
3,864,715	-		GFF3824	0.37	-1.1
3,864,715	-		GFF3824	0.37	-0.8
3,864,715	-		GFF3824	0.37	+0.8
3,864,715	-		GFF3824	0.37	-0.6
3,864,715	-		GFF3824	0.37	-0.8
3,864,715	-		GFF3824	0.37	+0.0
3,864,715	-		GFF3824	0.37	-2.6
3,864,725	-		GFF3824	0.46	-1.5
3,864,739	-		GFF3824	0.58	-0.1
3,864,752	+		GFF3824	0.69	-0.9
3,864,771	-		GFF3824	0.86	-0.4
3,864,781	-				-1.5
3,864,820	+				-1.0
3,864,820	+				-0.3
3,864,820	+				+1.1
3,864,828	-				-0.1
3,864,830	-				-2.2
3,864,838	-				-0.4
3,864,844	-				+0.9
3,864,860	-				-0.8
3,864,865	+				-1.1
3,864,865	+				+0.7
3,864,865	+				-0.5
3,864,865	+				+0.5
3,864,870	+				+0.3
3,864,870	+				+1.6
3,864,873	-				+0.8
3,864,873	-				+0.6
3,864,873	-				-1.1
3,864,898	+				-0.5
3,864,898	+				-0.6
3,864,898	+				-0.9
3,864,898	+				-0.2
3,864,906	-				+0.1
3,864,911	+				-0.2
3,864,916	+				+0.5
3,864,924	-				+0.7
3,864,924	-				-1.0
3,864,946	-				+0.3
3,864,960	-				-0.8
3,864,973	+				-0.5
3,865,032	+		GFF3825	0.13	-0.3
3,865,037	+		GFF3825	0.13	+0.8
3,865,039	-		GFF3825	0.13	+0.8
3,865,042	+		GFF3825	0.13	-1.8
3,865,042	+		GFF3825	0.13	-1.4
3,865,050	-		GFF3825	0.14	-2.6
3,865,053	+		GFF3825	0.14	+0.6
3,865,053	+		GFF3825	0.14	-0.4
3,865,058	+		GFF3825	0.14	-2.0
3,865,061	-		GFF3825	0.14	+0.3
3,865,066	-		GFF3825	0.15	-0.1
3,865,078	-		GFF3825	0.15	-0.0
3,865,100	+		GFF3825	0.17	+0.4
3,865,122	+		GFF3825	0.18	-0.8
3,865,135	+		GFF3825	0.19	-0.7
3,865,135	+		GFF3825	0.19	+0.3
3,865,135	+		GFF3825	0.19	+1.1
3,865,135	+		GFF3825	0.19	-0.2
3,865,135	+		GFF3825	0.19	-0.5
3,865,141	+		GFF3825	0.19	-0.1
3,865,141	+		GFF3825	0.19	+1.1
3,865,141	+		GFF3825	0.19	-0.0
3,865,141	+		GFF3825	0.19	-1.8
3,865,141	+		GFF3825	0.19	-0.5
3,865,141	+		GFF3825	0.19	-2.6
3,865,141	+		GFF3825	0.19	-0.5
3,865,143	-		GFF3825	0.20	-0.3
3,865,143	-		GFF3825	0.20	+0.3
3,865,143	-		GFF3825	0.20	-0.7
3,865,149	-		GFF3825	0.20	-0.4
3,865,149	-		GFF3825	0.20	+0.3
3,865,149	-		GFF3825	0.20	-0.0
3,865,149	-		GFF3825	0.20	-0.6
3,865,149	-		GFF3825	0.20	-1.6
3,865,149	-		GFF3825	0.20	-0.5
3,865,149	-		GFF3825	0.20	+0.7
3,865,149	-		GFF3825	0.20	-1.4
3,865,149	-		GFF3825	0.20	-0.0
3,865,149	-		GFF3825	0.20	-0.6
3,865,156	+		GFF3825	0.20	-0.0
3,865,156	+		GFF3825	0.20	-0.3
3,865,156	+		GFF3825	0.20	-2.3
3,865,156	+		GFF3825	0.20	-1.4
3,865,156	+		GFF3825	0.20	-2.5
3,865,164	-		GFF3825	0.21	-0.2
3,865,164	-		GFF3825	0.21	+0.2
3,865,164	-		GFF3825	0.21	-0.2
3,865,164	-		GFF3825	0.21	-0.4
3,865,164	-		GFF3825	0.21	-0.5
3,865,164	-		GFF3825	0.21	-0.4
3,865,164	-		GFF3825	0.21	+0.6
3,865,191	+		GFF3825	0.23	-0.8
3,865,210	-		GFF3825	0.24	-0.9
3,865,216	-		GFF3825	0.24	-0.3
3,865,218	+		GFF3825	0.24	+0.0
3,865,218	+		GFF3825	0.24	-0.9
3,865,226	-		GFF3825	0.25	+1.0
3,865,241	+		GFF3825	0.26	-0.2
3,865,246	+		GFF3825	0.26	+0.5
3,865,249	-		GFF3825	0.26	-0.1
3,865,270	+		GFF3825	0.27	+0.1
3,865,270	+		GFF3825	0.27	+0.8
3,865,296	+		GFF3825	0.29	+0.6
3,865,296	+		GFF3825	0.29	-1.1
3,865,304	-		GFF3825	0.30	-0.8
3,865,332	+		GFF3825	0.31	-1.2
3,865,332	+		GFF3825	0.31	+1.7
3,865,355	-		GFF3825	0.33	-0.4
3,865,368	+		GFF3825	0.34	+0.6
3,865,388	-		GFF3825	0.35	+0.2
3,865,393	-		GFF3825	0.35	+1.1
3,865,415	-		GFF3825	0.37	-0.1
3,865,416	+		GFF3825	0.37	+0.2
3,865,416	+		GFF3825	0.37	-1.6
3,865,465	+		GFF3825	0.40	+0.4
3,865,475	+		GFF3825	0.40	-0.3
3,865,493	-		GFF3825	0.41	-2.3
3,865,497	-		GFF3825	0.42	+1.8
3,865,524	+		GFF3825	0.43	+0.1
3,865,525	-		GFF3825	0.43	-0.2
3,865,532	-		GFF3825	0.44	-0.3
3,865,534	+		GFF3825	0.44	+1.7
3,865,534	+		GFF3825	0.44	-1.2
3,865,547	-		GFF3825	0.45	-1.9
3,865,551	-		GFF3825	0.45	-0.7
3,865,564	-		GFF3825	0.46	+0.2
3,865,564	-		GFF3825	0.46	-0.6
3,865,570	-		GFF3825	0.46	-0.3
3,865,572	+		GFF3825	0.46	+1.0
3,865,572	+		GFF3825	0.46	+0.5
3,865,595	+		GFF3825	0.48	+0.1
3,865,603	-		GFF3825	0.48	+0.8
3,865,618	-		GFF3825	0.49	+1.6
3,865,621	+		GFF3825	0.49	-1.1
3,865,629	-		GFF3825	0.50	-0.5
3,865,644	+		GFF3825	0.51	+0.9
3,865,651	+		GFF3825	0.51	-0.9
3,865,653	+		GFF3825	0.51	-0.4
3,865,666	+		GFF3825	0.52	+0.9
3,865,695	+		GFF3825	0.54	+0.2
3,865,703	-		GFF3825	0.54	-0.4
3,865,705	+		GFF3825	0.55	-1.7
3,865,705	+		GFF3825	0.55	+0.2
3,865,705	+		GFF3825	0.55	-1.4
3,865,705	+		GFF3825	0.55	-1.8
3,865,705	+		GFF3825	0.55	+0.2
3,865,705	+		GFF3825	0.55	-0.1
3,865,713	-		GFF3825	0.55	+0.1
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