Strain Fitness in Sphingobium sp. HT1-2 around GFF3817

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,857,977	+				-1.9
3,857,977	+				+0.4
3,857,985	+				+0.1
3,857,985	-				+0.2
3,857,993	+				-0.6
3,857,993	-				-0.2
3,857,993	-				+0.6
3,858,004	+				-0.0
3,858,008	+				+0.8
3,858,017	+				+0.0
3,858,017	+				+0.2
3,858,022	+				+0.4
3,858,031	-				-0.2
3,858,044	+				+0.4
3,858,071	-				+0.4
3,858,092	-				+0.3
3,858,106	+				-1.2
3,858,107	+				-0.2
3,858,107	-				-1.6
3,858,114	-				-1.1
3,858,139	-				-1.6
3,858,146	+				-0.3
3,858,146	+				-0.2
3,858,146	+				+1.2
3,858,154	-		GFF3816	0.10	-0.9
3,858,164	-		GFF3816	0.11	-1.0
3,858,196	+		GFF3816	0.15	-0.8
3,858,205	-		GFF3816	0.17	+0.8
3,858,208	+		GFF3816	0.17	+0.1
3,858,216	-		GFF3816	0.18	-1.2
3,858,251	-		GFF3816	0.22	-1.5
3,858,253	+		GFF3816	0.23	-0.8
3,858,258	+		GFF3816	0.23	-1.5
3,858,261	-		GFF3816	0.24	-3.5
3,858,279	+		GFF3816	0.26	-1.8
3,858,290	+		GFF3816	0.27	+0.2
3,858,298	-		GFF3816	0.28	-2.2
3,858,298	-		GFF3816	0.28	-0.9
3,858,298	-		GFF3816	0.28	-1.2
3,858,298	-		GFF3816	0.28	+0.4
3,858,298	-		GFF3816	0.28	+0.5
3,858,309	+		GFF3816	0.30	+1.3
3,858,312	-		GFF3816	0.30	-0.9
3,858,317	-		GFF3816	0.31	-1.6
3,858,317	-		GFF3816	0.31	+0.4
3,858,323	-		GFF3816	0.31	+0.1
3,858,325	+		GFF3816	0.32	-0.5
3,858,333	-		GFF3816	0.33	-2.2
3,858,354	-		GFF3816	0.35	+1.0
3,858,363	+		GFF3816	0.36	-1.2
3,858,364	+		GFF3816	0.36	-0.6
3,858,432	+		GFF3816	0.45	-0.7
3,858,449	-		GFF3816	0.47	+0.7
3,858,466	+		GFF3816	0.49	-1.5
3,858,471	+		GFF3816	0.50	-0.4
3,858,476	+		GFF3816	0.51	-2.0
3,858,493	+		GFF3816	0.53	-0.8
3,858,520	+		GFF3816	0.56	+0.0
3,858,520	+		GFF3816	0.56	-1.7
3,858,520	+		GFF3816	0.56	-1.3
3,858,550	-		GFF3816	0.60	-0.3
3,858,554	+		GFF3816	0.60	-1.9
3,858,555	+		GFF3816	0.60	+0.2
3,858,592	+		GFF3816	0.65	-0.8
3,858,593	+		GFF3816	0.65	-1.6
3,858,600	-		GFF3816	0.66	-0.8
3,858,601	-		GFF3816	0.66	-0.7
3,858,601	-		GFF3816	0.66	-0.9
3,858,601	-		GFF3816	0.66	-1.2
3,858,621	+		GFF3816	0.69	+0.3
3,858,681	-		GFF3816	0.76	-0.9
3,858,686	-		GFF3816	0.77	+0.7
3,858,696	+		GFF3816	0.78	-0.2
3,858,732	+		GFF3816	0.83	+0.4
3,858,756	+		GFF3816	0.86	-0.8
3,858,765	+		GFF3816	0.87	-0.6
3,858,768	-		GFF3816	0.87	-0.2
3,858,768	-		GFF3816	0.87	+0.1
3,858,781	-		GFF3816	0.89	-0.4
3,858,786	-		GFF3816	0.89	-0.8
3,858,792	-				-1.2
3,858,792	-				+0.6
3,858,792	-				-0.4
3,858,824	-				-0.4
3,858,827	+				-0.2
3,858,827	+				-0.7
3,858,827	+				+0.2
3,858,835	-				-2.8
3,858,835	-				-0.7
3,858,879	-				+0.4
3,858,879	-				-0.3
3,858,883	+				-0.4
3,858,885	+				-0.4
3,858,891	-				+1.0
3,858,892	+				+0.4
3,858,893	-				+1.1
3,858,910	-				-2.7
3,858,910	-				-0.4
3,858,938	-				-2.0
3,858,943	+				-1.1
3,858,951	-				-1.7
3,858,960	+				-1.7
3,858,960	+				+0.4
3,858,992	+				+0.7
3,859,049	+				-1.0
3,859,075	-		GFF3817	0.12	-0.5
3,859,077	+		GFF3817	0.12	-0.7
3,859,077	+		GFF3817	0.12	-0.4
3,859,077	+		GFF3817	0.12	+0.3
3,859,077	+		GFF3817	0.12	-0.3
3,859,077	+		GFF3817	0.12	+0.0
3,859,085	-		GFF3817	0.13	+0.7
3,859,085	-		GFF3817	0.13	+0.8
3,859,085	-		GFF3817	0.13	-0.1
3,859,087	+		GFF3817	0.13	+0.9
3,859,189	-		GFF3817	0.23	+0.4
3,859,189	-		GFF3817	0.23	-1.0
3,859,194	-		GFF3817	0.24	-1.1
3,859,214	+		GFF3817	0.26	-0.4
3,859,217	+		GFF3817	0.26	-1.5
3,859,220	-		GFF3817	0.26	+1.6
3,859,222	+		GFF3817	0.26	-0.7
3,859,228	-		GFF3817	0.27	+0.3
3,859,275	-		GFF3817	0.32	-0.8
3,859,292	+		GFF3817	0.33	+1.1
3,859,292	+		GFF3817	0.33	+0.8
3,859,300	-		GFF3817	0.34	+1.2
3,859,300	-		GFF3817	0.34	+0.7
3,859,319	-		GFF3817	0.36	+0.0
3,859,325	-		GFF3817	0.37	-0.1
3,859,334	-		GFF3817	0.38	-1.5
3,859,358	-		GFF3817	0.40	+1.1
3,859,366	-		GFF3817	0.41	-1.1
3,859,368	-		GFF3817	0.41	-2.2
3,859,378	+		GFF3817	0.42	+0.6
3,859,443	-		GFF3817	0.49	+0.5
3,859,443	-		GFF3817	0.49	-0.1
3,859,448	+		GFF3817	0.49	-0.4
3,859,456	-		GFF3817	0.50	-0.1
3,859,456	-		GFF3817	0.50	-0.4
3,859,456	-		GFF3817	0.50	+0.3
3,859,456	-		GFF3817	0.50	+1.2
3,859,483	-		GFF3817	0.53	-0.5
3,859,520	-		GFF3817	0.56	-0.7
3,859,552	+		GFF3817	0.60	-0.5
3,859,552	+		GFF3817	0.60	+0.2
3,859,552	+		GFF3817	0.60	-0.1
3,859,566	+		GFF3817	0.61	-1.4
3,859,567	+		GFF3817	0.61	-0.1
3,859,575	+		GFF3817	0.62	+0.6
3,859,575	+		GFF3817	0.62	-1.0
3,859,584	+		GFF3817	0.63	-0.2
3,859,590	-		GFF3817	0.63	-1.2
3,859,646	+		GFF3817	0.69	+0.4
3,859,646	+		GFF3817	0.69	+0.3
3,859,656	-		GFF3817	0.70	-0.6
3,859,672	+		GFF3817	0.72	+1.4
3,859,680	-		GFF3817	0.72	-1.4
3,859,680	-		GFF3817	0.72	-0.9
3,859,680	-		GFF3817	0.72	-1.6
3,859,682	+		GFF3817	0.73	+0.2
3,859,709	+		GFF3817	0.75	+0.8
3,859,709	+		GFF3817	0.75	+1.1
3,859,709	+		GFF3817	0.75	+1.3
3,859,713	+		GFF3817	0.76	-2.1
3,859,717	-		GFF3817	0.76	+0.8
3,859,755	-		GFF3817	0.80	+1.4
3,859,777	+		GFF3817	0.82	+0.0
3,859,784	+		GFF3817	0.83	+0.7
3,859,785	-		GFF3817	0.83	+0.2
3,859,786	-		GFF3817	0.83	-2.0
3,859,792	-		GFF3817	0.84	+0.2
3,859,797	+		GFF3817	0.84	-0.2
3,859,805	-		GFF3817	0.85	-0.8
3,859,829	+		GFF3817	0.87	+0.4
3,859,829	+		GFF3817	0.87	+0.3
3,859,829	+		GFF3817	0.87	+0.2
3,859,829	+		GFF3817	0.87	+1.3
3,859,837	-		GFF3817	0.88	-0.4
3,859,861	+				+0.7
3,859,861	+				+0.1
3,859,864	-				-0.3
3,859,869	-				-1.0
3,859,869	-				-1.2
3,859,872	+				+0.2
3,859,880	-				+0.5
3,859,968	-				+0.8
3,859,990	+				+1.3
3,859,990	+				+0.3
3,860,032	+				+0.5
3,860,034	+				-1.0
3,860,041	+				-0.4
3,860,042	-				-0.4
3,860,091	+				+0.2
3,860,091	+				+1.1
3,860,109	+				+0.3
3,860,142	+		GFF3818	0.18	-2.0
3,860,143	-		GFF3818	0.18	-0.0
3,860,145	+		GFF3818	0.19	-1.1
3,860,169	+		GFF3818	0.27	+0.2
3,860,194	-		GFF3818	0.37	+0.3
3,860,237	-		GFF3818	0.52	-1.0
3,860,248	+		GFF3818	0.56	-1.5
3,860,283	+		GFF3818	0.69	+0.8
3,860,283	+		GFF3818	0.69	-1.5
3,860,283	+		GFF3818	0.69	-1.5
3,860,283	+		GFF3818	0.69	-0.9
3,860,291	-		GFF3818	0.72	-0.5
3,860,297	-		GFF3818	0.74	-0.6
3,860,313	+		GFF3818	0.80	-0.6
3,860,313	+		GFF3818	0.80	-0.2
3,860,313	+		GFF3818	0.80	-1.4
3,860,315	+		GFF3818	0.81	-0.3
3,860,315	-		GFF3818	0.81	-0.9
3,860,321	-		GFF3818	0.83	+0.2
3,860,321	-		GFF3818	0.83	-0.2
3,860,323	-		GFF3818	0.84	-1.0
3,860,337	+		GFF3818	0.89	-1.8
3,860,370	+				-1.4
3,860,383	-				-1.5
3,860,437	-		GFF3819	0.18	+0.0
3,860,437	-		GFF3819	0.18	-2.3
3,860,481	+		GFF3819	0.29	-0.3
3,860,503	+		GFF3819	0.35	+0.5
3,860,523	+		GFF3819	0.40	-0.2
3,860,523	+		GFF3819	0.40	-1.9
3,860,531	-		GFF3819	0.41	+0.3
3,860,537	+		GFF3819	0.43	-1.0
3,860,544	+		GFF3819	0.45	-2.1
3,860,545	+		GFF3819	0.45	+1.1
3,860,546	+		GFF3819	0.45	-0.6
3,860,567	-		GFF3819	0.50	-2.8
3,860,569	+		GFF3819	0.51	-1.2
3,860,581	+		GFF3819	0.54	+0.6
3,860,609	+		GFF3819	0.61	-1.8
3,860,738	+				+0.2
3,860,743	+				-0.8
3,860,745	-				-1.2
3,860,818	-				-0.0
3,860,823	-				-1.9
3,860,825	+				-2.2
3,860,825	+				-0.0
3,860,825	+				-1.6
3,860,825	+				-2.2
3,860,825	+				-0.4
3,860,825	+				+1.0
3,860,825	+				+1.2
3,860,825	+				+0.7
3,860,825	+				+1.0
3,860,825	+				-0.4
3,860,825	+				+0.1
3,860,825	+				-1.6
3,860,825	+				-1.7
3,860,833	+				-0.3
3,860,833	-				+0.0
3,860,833	-				+1.6
3,860,833	-				+1.2
3,860,833	-				+0.2
3,860,833	-				-0.7
3,860,833	-				-1.2
3,860,833	-				+0.4
3,860,833	-				-0.9
3,860,833	-				+0.9
3,860,833	-				-1.5
3,860,833	-				-1.6
3,860,833	-				+1.1
3,860,833	-				-0.9
3,860,835	+				+0.8
3,860,835	+				-1.5
3,860,835	+				+0.4
3,860,835	+				+1.2
3,860,835	+				+1.3
3,860,835	+				-0.9
3,860,835	+				-1.1
3,860,835	+				-1.7
3,860,835	+				+1.1
3,860,835	+				+0.9
3,860,835	+				-1.4
3,860,835	+				-1.2
3,860,843	-				-0.5
3,860,843	-				+0.3
3,860,843	-				-0.1
3,860,843	-				+0.4
3,860,843	-				-0.9
3,860,843	-				-0.1
3,860,843	-				-0.0
3,860,843	-				-1.2
3,860,843	-				+0.9
3,860,843	-				-1.1
3,860,843	-				+0.3
3,860,843	-				-1.6
3,860,843	-				-0.2
3,860,843	-				-2.2
3,860,843	-				+0.0
3,860,843	-				+0.4
3,860,843	-				-1.0
3,860,870	-				-1.9
3,860,933	-		GFF3820	0.15	+0.5
3,860,952	+		GFF3820	0.17	+0.4
3,860,952	+		GFF3820	0.17	-1.5