Strain Fitness in Sphingobium sp. HT1-2 around GFF3810

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,850,667	-		GFF3809	0.39	-1.2
3,850,684	+		GFF3809	0.40	-0.9
3,850,686	-		GFF3809	0.40	-0.0
3,850,692	+		GFF3809	0.41	-1.8
3,850,692	+		GFF3809	0.41	+1.3
3,850,692	+		GFF3809	0.41	+0.9
3,850,692	+		GFF3809	0.41	+1.0
3,850,697	+		GFF3809	0.41	+0.6
3,850,697	+		GFF3809	0.41	-1.7
3,850,697	+		GFF3809	0.41	+1.0
3,850,697	+		GFF3809	0.41	+0.3
3,850,697	+		GFF3809	0.41	+0.1
3,850,697	+		GFF3809	0.41	-0.2
3,850,703	+		GFF3809	0.42	-1.9
3,850,703	+		GFF3809	0.42	-1.1
3,850,705	-		GFF3809	0.42	+0.2
3,850,705	-		GFF3809	0.42	-0.2
3,850,705	-		GFF3809	0.42	-1.9
3,850,705	-		GFF3809	0.42	-0.3
3,850,715	-		GFF3809	0.42	-1.2
3,850,720	+		GFF3809	0.43	-0.2
3,850,742	+		GFF3809	0.44	+0.7
3,850,742	+		GFF3809	0.44	-1.7
3,850,750	-		GFF3809	0.45	-1.8
3,850,750	-		GFF3809	0.45	+0.6
3,850,750	-		GFF3809	0.45	+0.6
3,850,750	-		GFF3809	0.45	+0.8
3,850,750	-		GFF3809	0.45	+0.4
3,850,750	-		GFF3809	0.45	-0.6
3,850,790	+		GFF3809	0.47	+0.3
3,850,825	-		GFF3809	0.50	+0.3
3,850,858	+		GFF3809	0.52	-1.9
3,850,858	+		GFF3809	0.52	+0.1
3,850,858	+		GFF3809	0.52	-0.5
3,850,858	+		GFF3809	0.52	-1.0
3,850,858	+		GFF3809	0.52	-0.6
3,850,858	+		GFF3809	0.52	-1.7
3,850,858	+		GFF3809	0.52	+0.4
3,850,858	+		GFF3809	0.52	+0.0
3,850,858	+		GFF3809	0.52	+1.1
3,850,858	+		GFF3809	0.52	-1.3
3,850,858	+		GFF3809	0.52	+0.7
3,850,866	-		GFF3809	0.52	-0.4
3,850,866	-		GFF3809	0.52	-1.1
3,850,866	-		GFF3809	0.52	-1.9
3,850,866	-		GFF3809	0.52	+0.9
3,850,866	-		GFF3809	0.52	-0.4
3,850,866	-		GFF3809	0.52	-1.9
3,850,866	-		GFF3809	0.52	+0.5
3,850,866	-		GFF3809	0.52	-0.1
3,850,866	-		GFF3809	0.52	-0.4
3,850,866	-		GFF3809	0.52	-0.6
3,850,870	+		GFF3809	0.53	-1.4
3,850,884	-		GFF3809	0.54	+0.6
3,850,908	+		GFF3809	0.55	-1.4
3,850,925	+		GFF3809	0.56	+0.4
3,850,939	+		GFF3809	0.57	-0.0
3,850,957	-		GFF3809	0.58	+0.1
3,850,960	+		GFF3809	0.59	+0.4
3,850,968	-		GFF3809	0.59	+0.5
3,850,968	-		GFF3809	0.59	-1.0
3,850,977	+		GFF3809	0.60	-2.1
3,850,985	-		GFF3809	0.60	+0.2
3,850,994	+		GFF3809	0.61	+0.5
3,851,002	-		GFF3809	0.61	+0.9
3,851,002	-		GFF3809	0.61	-0.6
3,851,012	-		GFF3809	0.62	+0.0
3,851,021	+		GFF3809	0.63	+0.7
3,851,047	+		GFF3809	0.64	-1.6
3,851,069	-		GFF3809	0.66	+0.9
3,851,076	+		GFF3809	0.66	-0.5
3,851,077	+		GFF3809	0.66	-0.2
3,851,084	+		GFF3809	0.67	-0.6
3,851,089	+		GFF3809	0.67	-1.2
3,851,090	+		GFF3809	0.67	-1.0
3,851,100	+		GFF3809	0.68	+0.8
3,851,108	-		GFF3809	0.68	-0.5
3,851,108	-		GFF3809	0.68	-0.8
3,851,108	-		GFF3809	0.68	-0.9
3,851,117	+		GFF3809	0.69	+0.5
3,851,125	-		GFF3809	0.69	+0.0
3,851,132	+		GFF3809	0.70	+0.6
3,851,151	+		GFF3809	0.71	+1.4
3,851,151	+		GFF3809	0.71	-1.3
3,851,167	+		GFF3809	0.72	+0.3
3,851,169	-		GFF3809	0.72	-0.8
3,851,173	+		GFF3809	0.73	-0.8
3,851,175	-		GFF3809	0.73	-0.9
3,851,190	-		GFF3809	0.74	-0.3
3,851,212	+		GFF3809	0.75	+0.5
3,851,238	-		GFF3809	0.77	+0.4
3,851,241	-		GFF3809	0.77	-0.9
3,851,270	-		GFF3809	0.79	-1.5
3,851,287	+		GFF3809	0.80	-0.1
3,851,292	+		GFF3809	0.80	-0.7
3,851,292	+		GFF3809	0.80	-0.4
3,851,292	+		GFF3809	0.80	+1.6
3,851,292	+		GFF3809	0.80	+0.8
3,851,292	+		GFF3809	0.80	+0.3
3,851,292	+		GFF3809	0.80	-0.6
3,851,292	+		GFF3809	0.80	+0.2
3,851,292	+		GFF3809	0.80	-0.0
3,851,292	+		GFF3809	0.80	+0.4
3,851,292	+		GFF3809	0.80	-0.1
3,851,292	+		GFF3809	0.80	-1.6
3,851,292	+		GFF3809	0.80	+0.5
3,851,292	+		GFF3809	0.80	+1.2
3,851,292	+		GFF3809	0.80	-2.0
3,851,292	+		GFF3809	0.80	-0.4
3,851,295	-		GFF3809	0.81	-1.9
3,851,300	-		GFF3809	0.81	+0.4
3,851,300	-		GFF3809	0.81	-0.9
3,851,300	-		GFF3809	0.81	-0.8
3,851,300	-		GFF3809	0.81	+0.2
3,851,300	-		GFF3809	0.81	+0.0
3,851,300	-		GFF3809	0.81	-0.1
3,851,300	-		GFF3809	0.81	+0.8
3,851,300	-		GFF3809	0.81	-1.2
3,851,300	-		GFF3809	0.81	+1.1
3,851,300	-		GFF3809	0.81	+0.6
3,851,300	-		GFF3809	0.81	-1.5
3,851,300	-		GFF3809	0.81	-2.3
3,851,300	-		GFF3809	0.81	-1.5
3,851,300	-		GFF3809	0.81	+0.3
3,851,300	-		GFF3809	0.81	+0.2
3,851,300	-		GFF3809	0.81	+1.1
3,851,300	-		GFF3809	0.81	-0.5
3,851,300	-		GFF3809	0.81	+0.2
3,851,300	-		GFF3809	0.81	+0.3
3,851,300	-		GFF3809	0.81	-0.9
3,851,300	-		GFF3809	0.81	-2.5
3,851,300	-		GFF3809	0.81	-0.9
3,851,300	-		GFF3809	0.81	+0.5
3,851,300	-		GFF3809	0.81	-2.5
3,851,313	+		GFF3809	0.82	+0.6
3,851,388	+		GFF3809	0.87	-1.1
3,851,388	+		GFF3809	0.87	+1.0
3,851,394	+		GFF3809	0.87	-2.7
3,851,396	-		GFF3809	0.87	-0.8
3,851,396	-		GFF3809	0.87	+0.6
3,851,396	-		GFF3809	0.87	+1.1
3,851,410	+		GFF3809	0.88	-2.7
3,851,412	+		GFF3809	0.88	-0.8
3,851,412	+		GFF3809	0.88	+0.8
3,851,412	+		GFF3809	0.88	-0.9
3,851,412	+		GFF3809	0.88	+0.8
3,851,418	-		GFF3809	0.89	-0.4
3,851,418	-		GFF3809	0.89	-0.6
3,851,420	-		GFF3809	0.89	-0.3
3,851,424	+		GFF3809	0.89	-2.5
3,851,425	+		GFF3809	0.89	+1.2
3,851,425	+		GFF3809	0.89	-1.6
3,851,425	+		GFF3809	0.89	+0.7
3,851,425	+		GFF3809	0.89	-1.1
3,851,479	+				+0.4
3,851,484	+				+0.4
3,851,485	+				+0.8
3,851,485	+				-0.5
3,851,492	-				-2.7
3,851,493	-				-0.6
3,851,495	+				-0.6
3,851,534	-				-0.2
3,851,571	+				+0.5
3,851,571	+				-1.6
3,851,572	+				-2.0
3,851,579	-				-0.6
3,851,602	-				-0.9
3,851,682	+		GFF3810	0.15	-0.8
3,851,700	+		GFF3810	0.22	-0.9
3,851,708	-		GFF3810	0.25	-0.3
3,851,719	+		GFF3810	0.29	+0.0
3,851,723	+		GFF3810	0.30	+0.3
3,851,723	+		GFF3810	0.30	+0.1
3,851,746	+		GFF3810	0.38	+0.5
3,851,751	+		GFF3810	0.40	+0.5
3,851,751	+		GFF3810	0.40	-1.2
3,851,751	+		GFF3810	0.40	-0.2
3,851,751	+		GFF3810	0.40	-0.4
3,851,751	+		GFF3810	0.40	-1.8
3,851,751	+		GFF3810	0.40	+1.4
3,851,751	+		GFF3810	0.40	+0.7
3,851,751	+		GFF3810	0.40	-2.7
3,851,759	-		GFF3810	0.43	-0.6
3,851,759	-		GFF3810	0.43	-0.2
3,851,759	-		GFF3810	0.43	-0.4
3,851,793	+		GFF3810	0.56	+0.6
3,851,862	+		GFF3810	0.81	+0.5
3,851,907	+				-0.5
3,851,915	-				-0.2