Strain Fitness in Sphingobium sp. HT1-2 around GFF3776

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,815,600	+				-0.7
3,815,608	-				-0.4
3,815,613	+				-0.9
3,815,641	+				-0.7
3,815,641	+				-0.7
3,815,646	+				-1.6
3,815,671	+				+1.1
3,815,688	-		GFF3775	0.11	-1.5
3,815,699	+		GFF3775	0.12	-1.9
3,815,705	-		GFF3775	0.13	+0.2
3,815,707	-		GFF3775	0.14	+0.5
3,815,731	+		GFF3775	0.17	+0.1
3,815,776	+		GFF3775	0.23	+0.1
3,815,776	+		GFF3775	0.23	-1.8
3,815,779	-		GFF3775	0.23	+0.4
3,815,781	+		GFF3775	0.23	+0.2
3,815,781	+		GFF3775	0.23	-1.0
3,815,781	+		GFF3775	0.23	-0.3
3,815,781	+		GFF3775	0.23	+0.3
3,815,781	+		GFF3775	0.23	-2.9
3,815,788	+		GFF3775	0.24	-3.3
3,815,788	+		GFF3775	0.24	+0.2
3,815,788	+		GFF3775	0.24	-0.0
3,815,788	+		GFF3775	0.24	-2.7
3,815,788	+		GFF3775	0.24	-1.1
3,815,789	-		GFF3775	0.24	-1.2
3,815,789	-		GFF3775	0.24	-0.3
3,815,789	-		GFF3775	0.24	-1.6
3,815,789	-		GFF3775	0.24	+0.8
3,815,789	-		GFF3775	0.24	-0.8
3,815,789	-		GFF3775	0.24	-2.3
3,815,789	-		GFF3775	0.24	+0.5
3,815,789	-		GFF3775	0.24	-0.7
3,815,790	-		GFF3775	0.24	+0.1
3,815,796	-		GFF3775	0.25	-0.2
3,815,796	-		GFF3775	0.25	+0.9
3,815,796	-		GFF3775	0.25	-0.3
3,815,796	-		GFF3775	0.25	-0.6
3,815,796	-		GFF3775	0.25	-1.9
3,815,796	-		GFF3775	0.25	-0.0
3,815,796	-		GFF3775	0.25	+0.2
3,815,796	-		GFF3775	0.25	+0.7
3,815,796	-		GFF3775	0.25	-0.6
3,815,796	-		GFF3775	0.25	+0.6
3,815,796	-		GFF3775	0.25	-0.1
3,815,798	+		GFF3775	0.25	+0.6
3,815,798	+		GFF3775	0.25	-0.1
3,815,798	+		GFF3775	0.25	-0.2
3,815,798	+		GFF3775	0.25	+1.0
3,815,798	+		GFF3775	0.25	+0.5
3,815,798	+		GFF3775	0.25	-1.2
3,815,798	+		GFF3775	0.25	-0.9
3,815,806	-		GFF3775	0.27	+0.0
3,815,806	-		GFF3775	0.27	-0.7
3,815,806	-		GFF3775	0.27	-1.2
3,815,806	-		GFF3775	0.27	-0.8
3,815,806	-		GFF3775	0.27	+0.4
3,815,831	+		GFF3775	0.30	-1.1
3,815,838	-		GFF3775	0.31	+0.5
3,815,838	-		GFF3775	0.31	+0.5
3,815,838	-		GFF3775	0.31	-0.7
3,815,838	-		GFF3775	0.31	+0.4
3,815,840	+		GFF3775	0.31	-0.0
3,815,843	+		GFF3775	0.31	-1.8
3,815,863	-		GFF3775	0.34	-1.2
3,815,863	-		GFF3775	0.34	-0.4
3,815,894	+		GFF3775	0.38	+0.2
3,815,902	-		GFF3775	0.39	-0.3
3,815,921	+		GFF3775	0.42	+0.2
3,815,924	-		GFF3775	0.42	-0.8
3,815,924	-		GFF3775	0.42	-0.3
3,815,929	-		GFF3775	0.43	-0.4
3,815,940	-		GFF3775	0.44	+0.5
3,815,940	-		GFF3775	0.44	-1.2
3,815,968	-		GFF3775	0.48	+0.2
3,815,970	+		GFF3775	0.48	+0.5
3,815,970	+		GFF3775	0.48	+0.5
3,815,987	+		GFF3775	0.50	+1.2
3,815,987	+		GFF3775	0.50	-1.1
3,815,987	+		GFF3775	0.50	-0.4
3,815,990	-		GFF3775	0.51	-0.8
3,815,995	-		GFF3775	0.51	-1.0
3,816,008	+		GFF3775	0.53	-1.2
3,816,014	-		GFF3775	0.54	+0.4
3,816,017	+		GFF3775	0.54	-0.7
3,816,044	+		GFF3775	0.58	-1.1
3,816,101	+		GFF3775	0.65	-2.9
3,816,101	+		GFF3775	0.65	-1.0
3,816,102	+		GFF3775	0.65	-0.6
3,816,118	+		GFF3775	0.67	-0.6
3,816,118	+		GFF3775	0.67	+0.1
3,816,118	+		GFF3775	0.67	-0.5
3,816,123	+		GFF3775	0.68	+0.2
3,816,126	-		GFF3775	0.69	+1.7
3,816,126	-		GFF3775	0.69	-0.5
3,816,126	-		GFF3775	0.69	-2.0
3,816,126	-		GFF3775	0.69	-0.4
3,816,126	-		GFF3775	0.69	+0.2
3,816,142	+		GFF3775	0.71	-0.4
3,816,142	+		GFF3775	0.71	-0.1
3,816,150	+		GFF3775	0.72	+0.5
3,816,167	-		GFF3775	0.74	+1.1
3,816,207	-		GFF3775	0.79	+0.9
3,816,209	+		GFF3775	0.79	-0.7
3,816,209	+		GFF3775	0.79	-0.2
3,816,216	+		GFF3775	0.80	-0.6
3,816,218	+		GFF3775	0.81	-1.8
3,816,224	-		GFF3775	0.81	+0.7
3,816,226	-		GFF3775	0.82	+0.8
3,816,226	-		GFF3775	0.82	-1.8
3,816,226	-		GFF3775	0.82	-2.2
3,816,245	+		GFF3775	0.84	-0.2
3,816,252	-		GFF3775	0.85	+0.0
3,816,253	+		GFF3775	0.85	+0.5
3,816,265	+		GFF3775	0.87	-0.3
3,816,291	-				+0.6
3,816,292	-				-0.5
3,816,292	-				-2.2
3,816,409	-				-0.1
3,816,415	+				-0.5
3,816,415	+				-0.0
3,816,430	+				-1.5
3,816,438	-				-0.3
3,816,438	-				-0.8
3,816,447	-				-0.4
3,816,458	+				-0.2
3,816,471	-				-0.6
3,816,500	-				-0.8
3,816,534	+				-1.2
3,816,553	+				-2.1
3,816,554	-				-0.5
3,816,563	+				-1.6
3,816,566	-				-0.2
3,816,571	-				+0.4
3,816,589	+				-0.5
3,816,589	+				+0.2
3,816,596	+				-0.2
3,816,596	+				-1.6
3,816,596	+				-0.3
3,816,597	-				-0.2
3,816,597	-				-0.6
3,816,604	-				-1.2
3,816,604	-				+0.5
3,816,606	+				-0.3
3,816,609	-				-0.9
3,816,614	-				-1.7
3,816,622	+				-0.2
3,816,622	+				-0.7
3,816,630	+				-0.6
3,816,630	+				+0.7
3,816,630	-				+1.7
3,816,630	-				-1.0
3,816,638	-				+0.7
3,816,642	-				+0.5
3,816,644	+				+1.1
3,816,644	+				+0.8
3,816,644	+				-2.0
3,816,644	+				-0.5
3,816,644	+				-0.9
3,816,644	+				-1.0
3,816,644	+				-0.2
3,816,644	+				-0.4
3,816,644	+				+1.0
3,816,644	+				-1.2
3,816,644	+				+0.3
3,816,649	+				+0.4
3,816,649	+				-0.7
3,816,652	-				-1.5
3,816,652	-				-1.0
3,816,652	-				+0.2
3,816,654	+				+1.0
3,816,654	+				-0.3
3,816,654	+				-0.3
3,816,654	+				-2.7
3,816,654	+				-0.5
3,816,657	-				-1.8
3,816,657	-				-0.9
3,816,657	-				+0.7
3,816,657	-				-0.4
3,816,662	-				-1.5
3,816,662	-				-1.7
3,816,662	-				-2.8
3,816,662	-				-1.6
3,816,667	-				+1.2
3,816,676	+		GFF3776	0.11	-0.9
3,816,704	+		GFF3776	0.15	-2.4
3,816,709	+		GFF3776	0.15	+0.1
3,816,709	+		GFF3776	0.15	-0.8
3,816,722	-		GFF3776	0.17	+0.8
3,816,736	+		GFF3776	0.19	-0.3
3,816,747	-		GFF3776	0.21	+0.3
3,816,752	+		GFF3776	0.22	-0.8
3,816,755	-		GFF3776	0.22	+0.1
3,816,755	-		GFF3776	0.22	-1.9
3,816,769	+		GFF3776	0.24	+0.2
3,816,775	-		GFF3776	0.25	-0.2
3,816,779	+		GFF3776	0.25	-1.3
3,816,781	+		GFF3776	0.26	-0.2
3,816,784	+		GFF3776	0.26	+0.9
3,816,787	-		GFF3776	0.26	-1.0
3,816,787	-		GFF3776	0.26	-0.3
3,816,787	-		GFF3776	0.26	+0.2
3,816,787	-		GFF3776	0.26	+0.8
3,816,789	-		GFF3776	0.27	+0.3
3,816,806	+		GFF3776	0.29	-0.2
3,816,814	-		GFF3776	0.30	+0.2
3,816,814	-		GFF3776	0.30	+0.1
3,816,847	+		GFF3776	0.35	-0.8
3,816,854	-		GFF3776	0.36	-1.5
3,816,855	-		GFF3776	0.36	-0.1
3,816,865	-		GFF3776	0.37	-0.5
3,816,872	+		GFF3776	0.38	+0.1
3,816,875	+		GFF3776	0.39	-1.1
3,816,875	+		GFF3776	0.39	+0.6
3,816,875	+		GFF3776	0.39	-0.4
3,816,883	-		GFF3776	0.40	-0.2
3,816,910	+		GFF3776	0.44	+0.3
3,816,915	+		GFF3776	0.44	+0.3
3,816,915	+		GFF3776	0.44	-0.6
3,816,923	-		GFF3776	0.46	-0.9
3,816,947	+		GFF3776	0.49	-1.1
3,816,955	-		GFF3776	0.50	-0.3
3,816,955	-		GFF3776	0.50	-1.3
3,816,955	-		GFF3776	0.50	+0.7
3,816,955	-		GFF3776	0.50	-1.4
3,816,955	-		GFF3776	0.50	+0.0
3,816,997	+		GFF3776	0.56	+0.2
3,816,997	+		GFF3776	0.56	-0.2
3,817,002	+		GFF3776	0.57	+0.5
3,817,002	+		GFF3776	0.57	-1.6
3,817,002	+		GFF3776	0.57	-0.6
3,817,002	+		GFF3776	0.57	-0.1
3,817,002	+		GFF3776	0.57	+0.5
3,817,002	+		GFF3776	0.57	-1.7
3,817,002	+		GFF3776	0.57	-0.3
3,817,002	+		GFF3776	0.57	+0.3
3,817,002	+		GFF3776	0.57	+1.1
3,817,002	+		GFF3776	0.57	+1.0
3,817,002	+		GFF3776	0.57	-1.5
3,817,002	+		GFF3776	0.57	+2.1
3,817,002	+		GFF3776	0.57	-0.6
3,817,002	+		GFF3776	0.57	+0.8
3,817,002	+		GFF3776	0.57	-0.3
3,817,006	+		GFF3776	0.57	-0.8
3,817,010	-		GFF3776	0.58	-0.9
3,817,010	-		GFF3776	0.58	+0.7
3,817,010	-		GFF3776	0.58	-0.2
3,817,010	-		GFF3776	0.58	-0.3
3,817,010	-		GFF3776	0.58	-0.9
3,817,010	-		GFF3776	0.58	+0.2
3,817,010	-		GFF3776	0.58	+0.9
3,817,010	-		GFF3776	0.58	-0.2
3,817,010	-		GFF3776	0.58	-1.2
3,817,010	-		GFF3776	0.58	-1.9
3,817,011	+		GFF3776	0.58	+0.3
3,817,011	+		GFF3776	0.58	-0.2
3,817,019	-		GFF3776	0.59	-0.9
3,817,064	+		GFF3776	0.65	-1.1
3,817,076	-		GFF3776	0.67	-1.4
3,817,086	-		GFF3776	0.68	-0.3
3,817,095	-		GFF3776	0.70	-0.6
3,817,131	+		GFF3776	0.75	+0.2
3,817,131	+		GFF3776	0.75	+0.8
3,817,138	+		GFF3776	0.76	+0.8
3,817,138	+		GFF3776	0.76	+0.2
3,817,139	+		GFF3776	0.76	-1.9
3,817,139	-		GFF3776	0.76	-1.4
3,817,143	+		GFF3776	0.77	-0.5
3,817,158	+		GFF3776	0.79	+0.4
3,817,166	-		GFF3776	0.80	-2.5
3,817,169	-		GFF3776	0.80	+0.1
3,817,171	-		GFF3776	0.80	+0.9
3,817,192	+		GFF3776	0.83	-0.0
3,817,203	+		GFF3776	0.85	-2.2
3,817,211	-		GFF3776	0.86	-0.9
3,817,211	-		GFF3776	0.86	-0.2
3,817,222	-		GFF3776	0.88	-0.2
3,817,228	+		GFF3776	0.88	+0.1
3,817,236	-		GFF3776	0.90	+0.9
3,817,241	+				-0.2
3,817,270	+				-0.1
3,817,278	-				+0.2
3,817,288	-				+0.2
3,817,317	+				+0.4
3,817,321	-				+0.4
3,817,326	-				+0.1
3,817,336	+				-1.0
3,817,336	+				+0.1
3,817,336	+				-1.4
3,817,336	+				-0.0
3,817,341	+		GFF3777	0.10	-0.3
3,817,344	-		GFF3777	0.11	+0.1
3,817,344	-		GFF3777	0.11	+0.3
3,817,344	-		GFF3777	0.11	+0.1
3,817,344	-		GFF3777	0.11	-3.0
3,817,344	-		GFF3777	0.11	-0.3
3,817,349	-		GFF3777	0.13	+0.1
3,817,349	-		GFF3777	0.13	-0.2
3,817,368	+		GFF3777	0.20	+0.3
3,817,368	-		GFF3777	0.20	+0.0
3,817,395	-		GFF3777	0.29	-0.6
3,817,395	-		GFF3777	0.29	+0.5
3,817,421	+		GFF3777	0.39	-0.2
3,817,423	-		GFF3777	0.39	-1.3
3,817,427	+		GFF3777	0.41	-1.3
3,817,435	-		GFF3777	0.44	+1.4
3,817,444	-		GFF3777	0.47	-1.3
3,817,461	-		GFF3777	0.53	+0.2
3,817,476	-		GFF3777	0.58	-0.1
3,817,477	+		GFF3777	0.59	-1.2
3,817,477	+		GFF3777	0.59	+1.2
3,817,480	-		GFF3777	0.60	-1.3
3,817,485	-		GFF3777	0.61	-0.8
3,817,485	-		GFF3777	0.61	+0.6
3,817,495	+		GFF3777	0.65	-0.4
3,817,495	+		GFF3777	0.65	-0.7
3,817,499	+		GFF3777	0.66	-0.4
3,817,506	-		GFF3777	0.69	-0.0
3,817,527	-		GFF3777	0.76	-0.2
3,817,566	-				-0.9
3,817,592	-				+1.0
3,817,613	-				+0.1
3,817,617	-				+0.1
3,817,630	-				+0.0
3,817,708	-				+0.4
3,817,716	-				-0.6
3,817,753	+				-0.3
3,817,771	-				-1.9
3,817,822	+				-0.7
3,817,822	+				-1.9
3,817,824	+				+1.2
3,817,830	-				-0.0
3,817,830	-				-0.8
3,817,830	-				+0.9
3,817,830	-				-0.8
3,817,830	-				-1.8
3,817,830	-				-0.3
3,817,832	-				-0.6
3,817,832	-				-0.1
3,817,832	-				+1.1
3,817,832	-				-0.1
3,817,832	-				-0.2
3,817,832	-				+0.3
3,817,840	-				-0.1
3,817,861	+				+0.1
3,817,869	-				-2.4
3,817,891	+				+0.0
3,817,891	+				-1.8
3,817,892	+				+1.0
3,817,892	+				-1.5
3,817,892	+				+0.9
3,817,892	+				+0.2
3,817,895	-				-0.8
3,817,900	-				+1.1
3,817,900	-				+1.7
3,817,900	-				-0.2
3,817,958	+				-1.2
3,817,972	+				-0.2
3,818,009	-				-1.6
3,818,057	+				-0.6
3,818,170	-		GFF3778	0.11	-1.8
3,818,296	+		GFF3778	0.15	+0.0