Strain Fitness in Sphingobium sp. HT1-2 around GFF3772

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,809,161	-		GFF3770	0.82	-1.6
3,809,403	-				-1.8
3,809,447	+				-2.7
3,809,450	-				-0.4
3,809,516	-				-0.4
3,809,536	+				+0.1
3,809,568	+				-1.8
3,809,573	+				+0.8
3,809,573	+				-0.2
3,809,573	+				+1.2
3,809,573	+				-2.1
3,809,573	+				+0.2
3,809,573	+				-0.8
3,809,573	+				-0.9
3,809,576	-		GFF3771	0.10	-0.8
3,809,578	+		GFF3771	0.11	+0.6
3,809,581	-		GFF3771	0.11	+1.1
3,809,581	-		GFF3771	0.11	-0.1
3,809,581	-		GFF3771	0.11	-3.0
3,809,581	-		GFF3771	0.11	+0.8
3,809,581	-		GFF3771	0.11	+0.7
3,809,581	-		GFF3771	0.11	+0.1
3,809,581	-		GFF3771	0.11	+0.6
3,809,581	-		GFF3771	0.11	-0.5
3,809,581	-		GFF3771	0.11	+0.6
3,809,581	-		GFF3771	0.11	-0.9
3,809,607	+		GFF3771	0.19	-0.1
3,809,607	+		GFF3771	0.19	-1.2
3,809,607	+		GFF3771	0.19	-1.1
3,809,607	+		GFF3771	0.19	-0.2
3,809,607	+		GFF3771	0.19	+0.2
3,809,607	+		GFF3771	0.19	+1.1
3,809,607	+		GFF3771	0.19	+0.8
3,809,612	+		GFF3771	0.20	-0.3
3,809,615	-		GFF3771	0.21	-0.6
3,809,615	-		GFF3771	0.21	-1.3
3,809,615	-		GFF3771	0.21	+0.2
3,809,615	-		GFF3771	0.21	+0.9
3,809,615	-		GFF3771	0.21	+0.0
3,809,615	-		GFF3771	0.21	+0.4
3,809,615	-		GFF3771	0.21	-0.0
3,809,615	-		GFF3771	0.21	+0.9
3,809,615	-		GFF3771	0.21	-2.9
3,809,615	-		GFF3771	0.21	-0.2
3,809,615	-		GFF3771	0.21	+1.0
3,809,619	+		GFF3771	0.22	+0.2
3,809,619	+		GFF3771	0.22	+0.2
3,809,627	-		GFF3771	0.24	-0.7
3,809,629	+		GFF3771	0.25	+0.2
3,809,641	+		GFF3771	0.28	-1.3
3,809,651	-		GFF3771	0.31	+0.2
3,809,657	+		GFF3771	0.32	-0.0
3,809,667	+		GFF3771	0.35	+1.1
3,809,672	+		GFF3771	0.36	-1.0
3,809,675	-		GFF3771	0.37	+1.1
3,809,676	+		GFF3771	0.37	+0.4
3,809,680	-		GFF3771	0.39	-0.7
3,809,684	+		GFF3771	0.40	-0.1
3,809,684	+		GFF3771	0.40	+0.9
3,809,684	+		GFF3771	0.40	-0.9
3,809,709	-		GFF3771	0.46	-0.3
3,809,737	+		GFF3771	0.54	-0.5
3,809,742	+		GFF3771	0.55	+1.1
3,809,747	+		GFF3771	0.57	-1.8
3,809,747	+		GFF3771	0.57	-2.0
3,809,747	+		GFF3771	0.57	-0.4
3,809,747	+		GFF3771	0.57	-1.3
3,809,747	+		GFF3771	0.57	-0.0
3,809,747	+		GFF3771	0.57	+0.5
3,809,752	+		GFF3771	0.58	-1.2
3,809,755	-		GFF3771	0.59	+0.4
3,809,755	-		GFF3771	0.59	+0.3
3,809,764	-		GFF3771	0.61	+0.6
3,809,766	-		GFF3771	0.62	+1.1
3,809,796	+		GFF3771	0.70	-1.3
3,809,796	+		GFF3771	0.70	+0.8
3,809,796	+		GFF3771	0.70	-1.1
3,809,796	+		GFF3771	0.70	+0.3
3,809,796	+		GFF3771	0.70	-0.3
3,809,796	+		GFF3771	0.70	+0.3
3,809,804	-		GFF3771	0.72	-1.3
3,809,804	-		GFF3771	0.72	-2.5
3,809,804	-		GFF3771	0.72	+1.0
3,809,823	-		GFF3771	0.78	-0.6
3,809,823	-		GFF3771	0.78	-0.0
3,809,828	+		GFF3771	0.79	+0.9
3,809,836	-		GFF3771	0.81	+0.0
3,809,840	-		GFF3771	0.82	-1.5
3,809,852	+		GFF3771	0.86	-0.7
3,809,902	+				-1.2
3,809,902	+				-0.5
3,809,902	+				+0.2
3,809,910	-				+0.9
3,809,935	+				-0.6
3,809,935	+				-1.3
3,809,943	-				+1.1
3,809,965	+				+0.5
3,810,000	+				-1.6
3,810,000	+				+1.2
3,810,004	+				+0.5
3,810,005	+				-2.1
3,810,005	+				+0.8
3,810,005	+				-1.5
3,810,005	+				+0.5
3,810,010	+				-1.3
3,810,010	+				+0.8
3,810,012	-				-1.8
3,810,013	-				-2.0
3,810,048	+				-0.1
3,810,048	+				-0.0
3,810,048	+				+0.4
3,810,048	+				+0.2
3,810,056	-				-3.1
3,810,056	-				+0.6
3,810,056	-				+0.5
3,810,056	-				-1.4
3,810,072	+				-0.3
3,810,084	+				-1.8
3,810,094	-				-1.0
3,810,122	+				+0.2
3,810,164	+		GFF3772	0.10	-0.4
3,810,164	+		GFF3772	0.10	+0.4
3,810,164	+		GFF3772	0.10	-0.1
3,810,172	-		GFF3772	0.11	+0.2
3,810,172	-		GFF3772	0.11	+0.2
3,810,172	-		GFF3772	0.11	+1.1
3,810,172	-		GFF3772	0.11	+1.0
3,810,172	-		GFF3772	0.11	+0.5
3,810,172	-		GFF3772	0.11	+0.9
3,810,177	-		GFF3772	0.12	-1.3
3,810,182	+		GFF3772	0.12	+0.9
3,810,182	+		GFF3772	0.12	-0.2
3,810,182	+		GFF3772	0.12	+1.4
3,810,183	+		GFF3772	0.12	-0.1
3,810,190	-		GFF3772	0.13	-1.3
3,810,190	-		GFF3772	0.13	+0.9
3,810,191	-		GFF3772	0.13	-1.5
3,810,191	-		GFF3772	0.13	-1.7
3,810,191	-		GFF3772	0.13	-0.9
3,810,219	+		GFF3772	0.16	-0.9
3,810,224	-		GFF3772	0.16	-0.7
3,810,227	-		GFF3772	0.17	-0.7
3,810,229	+		GFF3772	0.17	-1.5
3,810,234	+		GFF3772	0.17	-0.0
3,810,254	+		GFF3772	0.19	-0.0
3,810,262	-		GFF3772	0.20	-1.1
3,810,268	+		GFF3772	0.21	+0.9
3,810,273	+		GFF3772	0.21	-0.1
3,810,273	+		GFF3772	0.21	-0.5
3,810,273	+		GFF3772	0.21	-0.6
3,810,278	+		GFF3772	0.22	+1.0
3,810,281	-		GFF3772	0.22	-1.9
3,810,281	-		GFF3772	0.22	+1.1
3,810,281	-		GFF3772	0.22	+0.8
3,810,311	-		GFF3772	0.25	+0.2
3,810,311	-		GFF3772	0.25	-0.4
3,810,325	-		GFF3772	0.26	-1.1
3,810,330	-		GFF3772	0.27	-0.3
3,810,367	+		GFF3772	0.30	-1.4
3,810,402	-		GFF3772	0.34	-1.9
3,810,420	-		GFF3772	0.36	-0.4
3,810,453	+		GFF3772	0.39	-0.1
3,810,467	+		GFF3772	0.40	+0.3
3,810,475	+		GFF3772	0.41	-1.4
3,810,475	+		GFF3772	0.41	-1.5
3,810,498	+		GFF3772	0.43	-2.1
3,810,503	+		GFF3772	0.44	+0.7
3,810,536	+		GFF3772	0.47	+0.1
3,810,551	-		GFF3772	0.49	-0.5
3,810,562	+		GFF3772	0.50	-0.9
3,810,570	-		GFF3772	0.50	-0.2
3,810,586	+		GFF3772	0.52	-0.8
3,810,587	+		GFF3772	0.52	-0.2
3,810,587	+		GFF3772	0.52	+0.1
3,810,594	-		GFF3772	0.53	-0.2
3,810,595	-		GFF3772	0.53	+0.4
3,810,600	+		GFF3772	0.53	+1.0
3,810,608	-		GFF3772	0.54	+0.5
3,810,615	-		GFF3772	0.55	+0.4
3,810,643	-		GFF3772	0.58	+0.1
3,810,645	+		GFF3772	0.58	-0.3
3,810,645	+		GFF3772	0.58	-1.1
3,810,645	+		GFF3772	0.58	-2.3
3,810,645	+		GFF3772	0.58	-1.8
3,810,653	-		GFF3772	0.59	+1.1
3,810,653	-		GFF3772	0.59	-0.3
3,810,658	-		GFF3772	0.59	+0.3
3,810,663	+		GFF3772	0.60	-1.2
3,810,663	+		GFF3772	0.60	+0.0
3,810,678	+		GFF3772	0.61	-1.2
3,810,716	+		GFF3772	0.65	+0.2
3,810,791	+		GFF3772	0.72	-1.6
3,810,799	-		GFF3772	0.73	-0.8
3,810,823	-		GFF3772	0.75	+0.1
3,810,842	+		GFF3772	0.77	-0.8
3,810,847	+		GFF3772	0.78	+0.1
3,810,862	+		GFF3772	0.79	+0.6
3,810,884	+		GFF3772	0.81	-0.8
3,810,889	+		GFF3772	0.82	-1.2
3,810,894	+		GFF3772	0.82	-0.7
3,810,894	+		GFF3772	0.82	-1.5
3,810,902	-		GFF3772	0.83	+0.6
3,810,912	-		GFF3772	0.84	+0.1
3,810,914	+		GFF3772	0.84	+0.2
3,810,922	+		GFF3772	0.85	-0.3
3,810,943	-		GFF3772	0.87	+0.1
3,810,949	-		GFF3772	0.88	-1.5
3,810,966	+		GFF3772	0.90	+1.1
3,810,969	-		GFF3772	0.90	+0.2
3,810,974	-				-0.7
3,810,974	-				+0.6
3,811,057	+				-0.3
3,811,075	-				+0.7
3,811,078	+				-2.1
3,811,082	+				+0.8
3,811,088	+				-0.1
3,811,088	+				-0.8
3,811,088	+				-0.9
3,811,088	+				-0.3
3,811,091	-				-0.8
3,811,096	-				+0.7
3,811,096	-				+0.7
3,811,098	+				-0.5
3,811,137	-				-0.2
3,811,139	+				-0.3
3,811,139	+				+0.3
3,811,145	-				-0.5
3,811,152	-				+1.2
3,811,161	-				+0.0
3,811,171	+				-1.6
3,811,171	+				+1.1
3,811,175	+				-1.9
3,811,175	+				+0.0
3,811,176	+				-2.1
3,811,179	-				-0.1
3,811,184	-				-0.4
3,811,184	-				-0.1
3,811,185	+				-0.9
3,811,219	+				-1.3
3,811,227	-				+0.1
3,811,237	-				+0.8
3,811,237	-				+0.7
3,811,243	-				+0.2
3,811,248	-				-0.2
3,811,257	+				+1.7
3,811,269	+				-1.3
3,811,269	+				-0.6
3,811,274	+				-0.7
3,811,276	-				+0.3
3,811,277	-				+0.2
3,811,279	+				-0.8
3,811,279	+				-0.8
3,811,279	+				+0.5
3,811,279	+				-1.0
3,811,279	+				-0.1
3,811,279	+				-0.0
3,811,279	+				-2.0
3,811,279	+				-1.3
3,811,279	+				+1.7
3,811,279	+				+1.1
3,811,279	+				+0.4
3,811,279	+				-3.0
3,811,279	+				+0.7
3,811,284	+				-2.3
3,811,287	-				-0.1
3,811,287	-				+0.2
3,811,287	-				+0.2
3,811,287	-				+0.2
3,811,287	-				+0.0
3,811,287	-				-0.3
3,811,287	-				-0.0
3,811,287	-				-0.9
3,811,287	-				-0.8
3,811,287	-				+0.9
3,811,287	-				-1.4
3,811,287	-				-0.9
3,811,287	-				-0.3
3,811,289	+				+0.2
3,811,289	+				-0.2
3,811,289	+				-0.1
3,811,289	+				-1.1
3,811,289	+				+1.7
3,811,289	+				-0.0
3,811,289	+				+0.1
3,811,289	+				+0.4
3,811,289	+				-0.3
3,811,290	+				-2.5
3,811,290	+				-0.9
3,811,290	+				-0.8
3,811,290	+				-0.7
3,811,292	-				+0.1
3,811,297	-				+0.8
3,811,297	-				-0.4
3,811,297	-				-1.8
3,811,297	-				-1.5
3,811,297	-				+1.1
3,811,297	-				-0.5
3,811,297	-				+0.1
3,811,298	-				+0.5
3,811,298	-				-1.6
3,811,298	-				-0.3
3,811,298	-				-0.1
3,811,307	+				-0.3
3,811,336	+				-2.1
3,811,372	+		GFF3773	0.11	+1.5
3,811,372	+		GFF3773	0.11	+0.5
3,811,380	-		GFF3773	0.11	-0.3
3,811,380	-		GFF3773	0.11	-0.8
3,811,382	+		GFF3773	0.11	-0.4
3,811,388	-		GFF3773	0.12	+0.1
3,811,388	-		GFF3773	0.12	-2.5
3,811,390	-		GFF3773	0.12	+1.5
3,811,419	+		GFF3773	0.13	-0.8
3,811,422	+		GFF3773	0.13	-0.7
3,811,437	+		GFF3773	0.13	+0.0
3,811,445	-		GFF3773	0.14	+0.8
3,811,449	+		GFF3773	0.14	-0.8
3,811,449	+		GFF3773	0.14	-0.8
3,811,454	+		GFF3773	0.14	-0.1
3,811,466	+		GFF3773	0.14	-0.5
3,811,471	+		GFF3773	0.15	-0.6
3,811,471	+		GFF3773	0.15	+0.7
3,811,471	+		GFF3773	0.15	+0.4
3,811,471	+		GFF3773	0.15	+0.1
3,811,471	+		GFF3773	0.15	-1.6
3,811,479	+		GFF3773	0.15	-0.2
3,811,479	-		GFF3773	0.15	-0.6
3,811,479	-		GFF3773	0.15	-0.3
3,811,482	-		GFF3773	0.15	-0.9
3,811,482	-		GFF3773	0.15	-1.7
3,811,487	-		GFF3773	0.15	+0.0
3,811,487	-		GFF3773	0.15	+1.5
3,811,500	-		GFF3773	0.16	-1.7
3,811,502	-		GFF3773	0.16	-1.4
3,811,510	+		GFF3773	0.16	-0.3
3,811,518	-		GFF3773	0.16	-0.1
3,811,611	+		GFF3773	0.19	-1.0
3,811,619	-		GFF3773	0.20	-0.8
3,811,624	-		GFF3773	0.20	-0.7
3,811,663	+		GFF3773	0.21	+1.8
3,811,663	+		GFF3773	0.21	-0.8
3,811,663	+		GFF3773	0.21	+1.3
3,811,663	+		GFF3773	0.21	-0.8
3,811,663	+		GFF3773	0.21	-0.3
3,811,663	+		GFF3773	0.21	-1.9
3,811,663	+		GFF3773	0.21	-0.4
3,811,663	+		GFF3773	0.21	-0.2
3,811,663	+		GFF3773	0.21	-0.7
3,811,663	+		GFF3773	0.21	+1.5
3,811,663	+		GFF3773	0.21	-0.8
3,811,663	+		GFF3773	0.21	+0.3
3,811,663	+		GFF3773	0.21	+0.7
3,811,663	+		GFF3773	0.21	-2.1
3,811,663	+		GFF3773	0.21	+0.2
3,811,663	+		GFF3773	0.21	+0.5
3,811,663	+		GFF3773	0.21	+0.7
3,811,671	-		GFF3773	0.21	-0.9
3,811,671	-		GFF3773	0.21	+0.4
3,811,671	-		GFF3773	0.21	-1.2
3,811,671	-		GFF3773	0.21	+0.1
3,811,671	-		GFF3773	0.21	+0.3
3,811,671	-		GFF3773	0.21	-0.1
3,811,671	-		GFF3773	0.21	+0.2
3,811,671	-		GFF3773	0.21	-0.3
3,811,671	-		GFF3773	0.21	-0.3
3,811,671	-		GFF3773	0.21	+0.5
3,811,671	-		GFF3773	0.21	-0.5
3,811,671	-		GFF3773	0.21	-1.8
3,811,671	-		GFF3773	0.21	+0.0
3,811,671	-		GFF3773	0.21	-0.3
3,811,671	-		GFF3773	0.21	+1.7
3,811,672	-		GFF3773	0.21	-0.3
3,811,679	-		GFF3773	0.22	-1.5
3,811,697	+		GFF3773	0.22	+0.8
3,811,697	+		GFF3773	0.22	-0.4
3,811,697	+		GFF3773	0.22	-1.3
3,811,697	+		GFF3773	0.22	-1.7
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