Strain Fitness in Sphingobium sp. HT1-2 around GFF3732

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,774,866	+		GFF3731	0.25	-0.1
3,774,866	+		GFF3731	0.25	+0.1
3,774,870	+		GFF3731	0.25	-0.3
3,774,874	-		GFF3731	0.26	-0.9
3,774,892	+		GFF3731	0.27	-0.6
3,774,929	-		GFF3731	0.30	+0.4
3,774,929	-		GFF3731	0.30	+0.1
3,774,936	+		GFF3731	0.30	+1.9
3,774,939	-		GFF3731	0.30	+0.5
3,774,944	-		GFF3731	0.31	+0.7
3,774,944	-		GFF3731	0.31	+0.4
3,774,961	-		GFF3731	0.32	-0.5
3,774,972	+		GFF3731	0.33	-0.5
3,774,977	+		GFF3731	0.33	+1.1
3,774,985	-		GFF3731	0.34	-0.3
3,774,985	-		GFF3731	0.34	-0.4
3,775,005	+		GFF3731	0.35	-0.1
3,775,005	+		GFF3731	0.35	-0.2
3,775,013	-		GFF3731	0.36	+1.7
3,775,018	-		GFF3731	0.36	+1.1
3,775,026	+		GFF3731	0.37	-0.5
3,775,069	-		GFF3731	0.40	-1.8
3,775,075	+		GFF3731	0.41	-0.1
3,775,083	-		GFF3731	0.41	+0.1
3,775,112	+		GFF3731	0.43	+0.4
3,775,117	+		GFF3731	0.44	+0.9
3,775,125	-		GFF3731	0.44	+1.0
3,775,136	+		GFF3731	0.45	-0.6
3,775,144	+		GFF3731	0.46	-0.3
3,775,151	-		GFF3731	0.46	-0.6
3,775,152	-		GFF3731	0.46	+0.2
3,775,175	-		GFF3731	0.48	-0.5
3,775,180	+		GFF3731	0.49	+1.2
3,775,180	+		GFF3731	0.49	-0.2
3,775,180	+		GFF3731	0.49	+1.8
3,775,188	-		GFF3731	0.49	-1.6
3,775,204	-		GFF3731	0.50	+1.7
3,775,249	-		GFF3731	0.54	-1.1
3,775,299	-		GFF3731	0.57	-1.6
3,775,313	+		GFF3731	0.59	-1.5
3,775,313	+		GFF3731	0.59	+0.1
3,775,313	+		GFF3731	0.59	+0.1
3,775,321	-		GFF3731	0.59	-1.7
3,775,321	-		GFF3731	0.59	-0.4
3,775,328	+		GFF3731	0.60	-1.7
3,775,328	+		GFF3731	0.60	-0.4
3,775,328	+		GFF3731	0.60	-0.1
3,775,328	+		GFF3731	0.60	+0.8
3,775,328	+		GFF3731	0.60	+0.2
3,775,328	+		GFF3731	0.60	-0.9
3,775,328	+		GFF3731	0.60	-0.7
3,775,328	+		GFF3731	0.60	-0.4
3,775,328	+		GFF3731	0.60	-0.8
3,775,328	+		GFF3731	0.60	+0.1
3,775,328	+		GFF3731	0.60	+0.4
3,775,336	-		GFF3731	0.60	-1.1
3,775,336	-		GFF3731	0.60	+0.5
3,775,336	-		GFF3731	0.60	-0.9
3,775,336	-		GFF3731	0.60	+0.8
3,775,336	-		GFF3731	0.60	-0.1
3,775,336	-		GFF3731	0.60	-0.3
3,775,336	-		GFF3731	0.60	+0.9
3,775,336	-		GFF3731	0.60	+0.2
3,775,338	+		GFF3731	0.60	-0.5
3,775,382	+		GFF3731	0.64	+1.2
3,775,383	-		GFF3731	0.64	-1.8
3,775,419	+		GFF3731	0.67	-0.3
3,775,428	+		GFF3731	0.67	-0.3
3,775,428	+		GFF3731	0.67	+1.2
3,775,443	-		GFF3731	0.68	-0.3
3,775,448	-		GFF3731	0.69	-0.3
3,775,465	+		GFF3731	0.70	+0.1
3,775,465	+		GFF3731	0.70	+0.5
3,775,467	+		GFF3731	0.70	-0.0
3,775,467	+		GFF3731	0.70	+0.2
3,775,467	+		GFF3731	0.70	+1.4
3,775,467	+		GFF3731	0.70	+0.4
3,775,467	+		GFF3731	0.70	+0.4
3,775,467	+		GFF3731	0.70	-0.6
3,775,467	+		GFF3731	0.70	+0.2
3,775,467	+		GFF3731	0.70	+0.5
3,775,467	+		GFF3731	0.70	-1.7
3,775,467	+		GFF3731	0.70	+2.0
3,775,467	+		GFF3731	0.70	-0.3
3,775,467	+		GFF3731	0.70	+1.3
3,775,467	+		GFF3731	0.70	-0.4
3,775,467	+		GFF3731	0.70	-0.4
3,775,467	+		GFF3731	0.70	-1.5
3,775,467	+		GFF3731	0.70	+0.9
3,775,467	+		GFF3731	0.70	-0.3
3,775,475	-		GFF3731	0.71	-0.2
3,775,475	-		GFF3731	0.71	-1.3
3,775,475	-		GFF3731	0.71	-0.8
3,775,475	-		GFF3731	0.71	-0.3
3,775,475	-		GFF3731	0.71	-0.1
3,775,475	-		GFF3731	0.71	-1.3
3,775,475	-		GFF3731	0.71	+0.6
3,775,475	-		GFF3731	0.71	+0.5
3,775,475	-		GFF3731	0.71	-1.5
3,775,475	-		GFF3731	0.71	-0.2
3,775,475	-		GFF3731	0.71	-0.5
3,775,475	-		GFF3731	0.71	-1.2
3,775,475	-		GFF3731	0.71	+0.5
3,775,475	-		GFF3731	0.71	+0.7
3,775,475	-		GFF3731	0.71	-0.5
3,775,475	-		GFF3731	0.71	+0.3
3,775,475	-		GFF3731	0.71	+0.6
3,775,475	-		GFF3731	0.71	-0.9
3,775,475	-		GFF3731	0.71	-0.5
3,775,475	-		GFF3731	0.71	+0.2
3,775,475	-		GFF3731	0.71	+0.2
3,775,475	-		GFF3731	0.71	+0.9
3,775,480	-		GFF3731	0.71	-0.5
3,775,505	+		GFF3731	0.73	+0.1
3,775,554	+		GFF3731	0.77	-0.1
3,775,599	+		GFF3731	0.80	-2.3
3,775,605	+		GFF3731	0.81	+1.3
3,775,614	-		GFF3731	0.81	-0.3
3,775,623	+		GFF3731	0.82	+0.5
3,775,631	-		GFF3731	0.82	-0.2
3,775,647	+		GFF3731	0.84	+1.7
3,775,654	+		GFF3731	0.84	+1.0
3,775,657	+		GFF3731	0.84	-0.0
3,775,674	+		GFF3731	0.86	-0.5
3,775,674	+		GFF3731	0.86	+0.3
3,775,674	+		GFF3731	0.86	+1.2
3,775,682	-		GFF3731	0.86	-0.2
3,775,711	-		GFF3731	0.88	+2.1
3,775,711	-		GFF3731	0.88	-1.2
3,775,713	+		GFF3731	0.89	-1.1
3,775,716	-		GFF3731	0.89	+1.0
3,775,721	+		GFF3731	0.89	-0.1
3,775,759	+				+0.1
3,775,767	-				-0.5
3,775,767	-				-1.2
3,775,767	-				-1.6
3,775,785	-				-0.4
3,775,785	-				+1.1
3,775,798	+				-0.3
3,775,806	-				+0.4
3,775,806	-				-0.1
3,775,806	-				+0.3
3,775,806	-				-0.0
3,775,814	-				+0.3
3,775,827	-				+0.7
3,775,867	+				-0.8
3,775,874	-				+1.7
3,775,885	+				+0.6
3,775,903	+		GFF3732	0.10	+0.6
3,775,907	+		GFF3732	0.11	-0.9
3,775,908	-		GFF3732	0.11	+1.0
3,775,916	-		GFF3732	0.13	+0.9
3,775,922	+		GFF3732	0.15	-0.5
3,775,928	+		GFF3732	0.16	+1.1
3,775,928	+		GFF3732	0.16	+0.4
3,775,928	+		GFF3732	0.16	+0.3
3,775,930	-		GFF3732	0.16	+0.1
3,775,936	+		GFF3732	0.18	-0.2
3,775,936	-		GFF3732	0.18	+0.3
3,775,936	-		GFF3732	0.18	-0.3
3,775,936	-		GFF3732	0.18	+0.5
3,775,950	+		GFF3732	0.21	+0.6
3,775,956	+		GFF3732	0.23	-0.2
3,775,975	+		GFF3732	0.27	+1.1
3,775,976	+		GFF3732	0.27	+0.4
3,775,983	+		GFF3732	0.29	-0.6
3,775,991	-		GFF3732	0.31	-0.6
3,776,009	+		GFF3732	0.35	-1.0
3,776,009	+		GFF3732	0.35	-1.5
3,776,009	+		GFF3732	0.35	-0.1
3,776,016	+		GFF3732	0.37	+1.3
3,776,016	+		GFF3732	0.37	-0.9
3,776,016	+		GFF3732	0.37	+1.0
3,776,016	+		GFF3732	0.37	-2.7
3,776,016	+		GFF3732	0.37	+0.5
3,776,016	+		GFF3732	0.37	-1.6
3,776,017	-		GFF3732	0.37	+0.2
3,776,017	-		GFF3732	0.37	+0.2
3,776,017	-		GFF3732	0.37	-1.7
3,776,024	-		GFF3732	0.38	+0.0
3,776,024	-		GFF3732	0.38	+0.9
3,776,024	-		GFF3732	0.38	-0.1
3,776,024	-		GFF3732	0.38	-0.7
3,776,024	-		GFF3732	0.38	+0.5
3,776,034	+		GFF3732	0.41	+0.5
3,776,050	-		GFF3732	0.45	+0.5
3,776,057	+		GFF3732	0.46	-0.6
3,776,063	+		GFF3732	0.48	-0.0
3,776,071	+		GFF3732	0.50	-0.9
3,776,071	+		GFF3732	0.50	-1.8
3,776,071	+		GFF3732	0.50	-0.2
3,776,071	+		GFF3732	0.50	-1.0
3,776,071	+		GFF3732	0.50	-1.3
3,776,071	+		GFF3732	0.50	-0.2
3,776,071	+		GFF3732	0.50	-0.6
3,776,071	-		GFF3732	0.50	+0.1
3,776,076	+		GFF3732	0.51	+1.4
3,776,079	-		GFF3732	0.51	-0.7
3,776,079	-		GFF3732	0.51	+1.5
3,776,079	-		GFF3732	0.51	+0.0
3,776,079	-		GFF3732	0.51	+0.5
3,776,108	+		GFF3732	0.58	+0.5
3,776,114	-		GFF3732	0.60	-1.6
3,776,116	-		GFF3732	0.60	-0.6
3,776,126	+		GFF3732	0.62	-0.5
3,776,140	-		GFF3732	0.66	-0.3
3,776,142	+		GFF3732	0.66	+0.3
3,776,142	+		GFF3732	0.66	-0.1
3,776,144	+		GFF3732	0.67	+0.2
3,776,144	+		GFF3732	0.67	-0.4
3,776,144	+		GFF3732	0.67	+0.5
3,776,147	-		GFF3732	0.67	-2.0
3,776,150	-		GFF3732	0.68	-0.0
3,776,152	-		GFF3732	0.69	-0.5
3,776,186	+		GFF3732	0.77	+1.1
3,776,192	-		GFF3732	0.78	+1.0
3,776,193	+		GFF3732	0.78	+2.2
3,776,193	+		GFF3732	0.78	-0.0
3,776,201	-		GFF3732	0.80	+1.1
3,776,235	-		GFF3732	0.88	-2.1
3,776,271	+				+0.2
3,776,275	-				-1.3
3,776,279	+				-1.2
3,776,279	+				+0.0
3,776,279	+				-1.0
3,776,284	-				+0.4
3,776,287	-				-0.3
3,776,287	-				+0.2
3,776,301	-				+0.2
3,776,316	+				-2.6
3,776,319	+				+0.7
3,776,324	+				-0.5
3,776,342	+				-0.0
3,776,349	-				-0.3
3,776,368	-				-0.7
3,776,378	+				-0.4
3,776,384	-				+0.9
3,776,390	+				+0.8
3,776,391	-				-0.5
3,776,398	+				-2.1
3,776,400	+				-2.4
3,776,400	+				-1.0
3,776,406	-				-1.7
3,776,408	-				+0.2
3,776,408	-				+0.7
3,776,430	+				-1.5
3,776,456	+				-0.9
3,776,456	+				-0.3
3,776,464	-				-2.7
3,776,481	+				-0.8
3,776,481	+				-0.3
3,776,486	+				-1.0
3,776,489	+				-1.2
3,776,490	-				+0.1
3,776,497	-				+0.6
3,776,533	+		GFF3733	0.11	-1.8
3,776,533	+		GFF3733	0.11	-1.3
3,776,535	+		GFF3733	0.11	-0.0
3,776,541	-		GFF3733	0.12	+0.5
3,776,541	-		GFF3733	0.12	-0.8
3,776,541	-		GFF3733	0.12	+0.3
3,776,550	+		GFF3733	0.12	+0.2
3,776,552	+		GFF3733	0.12	-1.7
3,776,560	+		GFF3733	0.13	-0.8
3,776,573	-		GFF3733	0.13	-2.2
3,776,575	+		GFF3733	0.13	+0.6
3,776,622	+		GFF3733	0.16	+0.3
3,776,638	+		GFF3733	0.16	-0.5
3,776,645	-		GFF3733	0.17	-0.6
3,776,648	+		GFF3733	0.17	+0.8
3,776,661	-		GFF3733	0.17	-1.5
3,776,696	+		GFF3733	0.19	-0.7
3,776,696	+		GFF3733	0.19	+1.5
3,776,699	-		GFF3733	0.19	-1.7
3,776,704	-		GFF3733	0.19	+0.1
3,776,704	-		GFF3733	0.19	+0.6
3,776,704	-		GFF3733	0.19	-1.2
3,776,704	-		GFF3733	0.19	-1.3
3,776,704	-		GFF3733	0.19	-1.5
3,776,721	+		GFF3733	0.20	+0.5
3,776,721	+		GFF3733	0.20	-0.2
3,776,723	-		GFF3733	0.20	+0.2
3,776,742	-		GFF3733	0.21	-0.2
3,776,751	+		GFF3733	0.21	+0.9
3,776,751	-		GFF3733	0.21	+0.6
3,776,759	-		GFF3733	0.22	+0.7
3,776,759	-		GFF3733	0.22	-0.5
3,776,783	-		GFF3733	0.23	-2.0
3,776,791	+		GFF3733	0.23	-0.1
3,776,796	+		GFF3733	0.24	-1.6
3,776,827	+		GFF3733	0.25	+0.3
3,776,836	-		GFF3733	0.25	+0.1
3,776,870	+		GFF3733	0.27	+0.9
3,776,870	+		GFF3733	0.27	-0.5
3,776,892	+		GFF3733	0.28	-1.3
3,776,892	+		GFF3733	0.28	-1.3
3,776,892	+		GFF3733	0.28	-0.6
3,776,892	+		GFF3733	0.28	-0.5
3,776,892	+		GFF3733	0.28	-0.2
3,776,892	+		GFF3733	0.28	-0.6
3,776,892	+		GFF3733	0.28	+0.8
3,776,892	+		GFF3733	0.28	+1.3
3,776,895	-		GFF3733	0.28	+0.7
3,776,897	+		GFF3733	0.28	-1.6
3,776,900	-		GFF3733	0.28	+0.7
3,776,900	-		GFF3733	0.28	+0.2
3,776,900	-		GFF3733	0.28	-0.8
3,776,905	-		GFF3733	0.29	+0.7
3,776,940	+		GFF3733	0.30	+0.7
3,776,953	+		GFF3733	0.31	-0.8
3,776,961	-		GFF3733	0.31	-0.8
3,776,979	-		GFF3733	0.32	-0.9
3,776,981	+		GFF3733	0.32	-1.9
3,777,025	-		GFF3733	0.34	-1.0
3,777,046	+		GFF3733	0.35	-1.4
3,777,051	+		GFF3733	0.35	-0.5
3,777,055	-		GFF3733	0.36	+0.7
3,777,064	+		GFF3733	0.36	-0.4
3,777,067	+		GFF3733	0.36	+0.3
3,777,067	+		GFF3733	0.36	-0.8
3,777,069	+		GFF3733	0.36	-0.1
3,777,074	-		GFF3733	0.36	-0.2
3,777,074	-		GFF3733	0.36	-1.2
3,777,075	-		GFF3733	0.36	-0.5
3,777,077	-		GFF3733	0.37	+0.7
3,777,147	-		GFF3733	0.40	-0.8
3,777,152	-		GFF3733	0.40	-0.2
3,777,162	+		GFF3733	0.41	-0.3
3,777,162	-		GFF3733	0.41	-0.7
3,777,167	-		GFF3733	0.41	+0.2
3,777,172	-		GFF3733	0.41	-0.5
3,777,174	+		GFF3733	0.41	-2.5
3,777,182	+		GFF3733	0.41	+0.4
3,777,182	+		GFF3733	0.41	-0.3
3,777,182	+		GFF3733	0.41	-1.8
3,777,182	-		GFF3733	0.41	-0.6
3,777,189	-		GFF3733	0.42	-0.1
3,777,256	+		GFF3733	0.45	-0.6
3,777,256	+		GFF3733	0.45	+0.6
3,777,256	+		GFF3733	0.45	-0.8
3,777,256	+		GFF3733	0.45	+0.4
3,777,256	+		GFF3733	0.45	+0.4
3,777,256	+		GFF3733	0.45	+0.3
3,777,256	+		GFF3733	0.45	+1.6
3,777,261	+		GFF3733	0.45	+1.3
3,777,264	-		GFF3733	0.45	-1.7
3,777,264	-		GFF3733	0.45	+0.2
3,777,266	+		GFF3733	0.45	-1.1
3,777,281	-		GFF3733	0.46	+0.7
3,777,281	-		GFF3733	0.46	-0.8
3,777,281	-		GFF3733	0.46	-1.6