Strain Fitness in Sphingobium sp. HT1-2 around GFF3727

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,769,791	-		GFF3726	0.23	+1.3
3,769,799	+		GFF3726	0.24	+1.1
3,769,806	-		GFF3726	0.24	+0.7
3,769,829	+		GFF3726	0.26	-0.4
3,769,832	-		GFF3726	0.27	-0.6
3,769,833	+		GFF3726	0.27	-1.1
3,769,833	+		GFF3726	0.27	-0.8
3,769,839	-		GFF3726	0.27	-0.1
3,769,861	+		GFF3726	0.29	-0.1
3,769,874	+		GFF3726	0.30	+1.4
3,769,874	+		GFF3726	0.30	-2.7
3,769,875	+		GFF3726	0.30	+0.1
3,769,887	-		GFF3726	0.31	+0.5
3,769,893	-		GFF3726	0.31	-0.2
3,769,893	-		GFF3726	0.31	-2.2
3,769,901	+		GFF3726	0.32	+0.2
3,769,901	+		GFF3726	0.32	-1.3
3,769,901	+		GFF3726	0.32	+0.8
3,769,919	-		GFF3726	0.33	-0.7
3,769,925	+		GFF3726	0.34	-0.9
3,769,926	+		GFF3726	0.34	+1.2
3,769,933	-		GFF3726	0.34	+0.2
3,769,934	-		GFF3726	0.35	-0.6
3,769,935	+		GFF3726	0.35	+1.0
3,769,949	+		GFF3726	0.36	-0.1
3,769,949	+		GFF3726	0.36	+1.4
3,769,950	+		GFF3726	0.36	+1.8
3,769,950	+		GFF3726	0.36	-0.5
3,769,950	+		GFF3726	0.36	-1.3
3,769,950	+		GFF3726	0.36	+1.1
3,769,957	+		GFF3726	0.36	-0.9
3,769,957	-		GFF3726	0.36	-1.2
3,769,958	-		GFF3726	0.36	-1.7
3,769,958	-		GFF3726	0.36	+0.9
3,769,958	-		GFF3726	0.36	-1.3
3,769,964	+		GFF3726	0.37	+0.2
3,769,964	+		GFF3726	0.37	+0.4
3,769,964	+		GFF3726	0.37	+0.5
3,769,982	-		GFF3726	0.38	+1.0
3,769,984	+		GFF3726	0.38	-0.7
3,769,984	+		GFF3726	0.38	+1.5
3,769,984	+		GFF3726	0.38	+0.4
3,769,992	-		GFF3726	0.39	-1.9
3,769,992	-		GFF3726	0.39	-1.6
3,769,992	-		GFF3726	0.39	-2.1
3,769,992	-		GFF3726	0.39	+0.4
3,769,992	-		GFF3726	0.39	+1.4
3,770,001	+		GFF3726	0.40	-1.3
3,770,004	-		GFF3726	0.40	-1.2
3,770,009	-		GFF3726	0.40	-0.1
3,770,059	-		GFF3726	0.44	+0.8
3,770,061	+		GFF3726	0.44	-0.1
3,770,061	+		GFF3726	0.44	-0.3
3,770,065	+		GFF3726	0.45	-0.8
3,770,065	+		GFF3726	0.45	-1.1
3,770,065	+		GFF3726	0.45	+0.0
3,770,069	-		GFF3726	0.45	-1.2
3,770,069	-		GFF3726	0.45	+0.6
3,770,069	-		GFF3726	0.45	+0.5
3,770,069	-		GFF3726	0.45	+0.2
3,770,073	-		GFF3726	0.45	+0.6
3,770,073	-		GFF3726	0.45	-0.3
3,770,073	-		GFF3726	0.45	-1.4
3,770,073	-		GFF3726	0.45	-1.7
3,770,073	-		GFF3726	0.45	+0.7
3,770,087	+		GFF3726	0.46	-0.6
3,770,087	+		GFF3726	0.46	-0.2
3,770,088	-		GFF3726	0.47	-0.6
3,770,116	+		GFF3726	0.49	+0.9
3,770,131	+		GFF3726	0.50	-0.1
3,770,138	-		GFF3726	0.50	+0.5
3,770,156	-		GFF3726	0.52	+0.2
3,770,158	-		GFF3726	0.52	-1.0
3,770,158	-		GFF3726	0.52	+0.2
3,770,167	-		GFF3726	0.53	-0.3
3,770,168	-		GFF3726	0.53	+0.8
3,770,173	-		GFF3726	0.53	-0.1
3,770,192	-		GFF3726	0.55	+1.6
3,770,194	-		GFF3726	0.55	+0.0
3,770,196	+		GFF3726	0.55	-0.2
3,770,197	+		GFF3726	0.55	+0.7
3,770,200	-		GFF3726	0.55	-1.2
3,770,204	-		GFF3726	0.56	-0.2
3,770,217	-		GFF3726	0.57	+0.2
3,770,226	+		GFF3726	0.57	+0.5
3,770,268	-		GFF3726	0.61	-0.6
3,770,272	+		GFF3726	0.61	-1.1
3,770,278	-		GFF3726	0.61	-0.5
3,770,278	-		GFF3726	0.61	-2.1
3,770,278	-		GFF3726	0.61	+1.5
3,770,292	-		GFF3726	0.63	-0.1
3,770,292	-		GFF3726	0.63	+0.6
3,770,298	+		GFF3726	0.63	+0.5
3,770,316	-		GFF3726	0.64	-0.1
3,770,325	-		GFF3726	0.65	-0.0
3,770,446	+		GFF3726	0.75	-0.5
3,770,464	+		GFF3726	0.76	+0.6
3,770,464	+		GFF3726	0.76	+0.5
3,770,464	+		GFF3726	0.76	+0.0
3,770,471	+		GFF3726	0.77	+2.2
3,770,471	+		GFF3726	0.77	+0.7
3,770,472	-		GFF3726	0.77	+0.1
3,770,472	-		GFF3726	0.77	+0.1
3,770,479	-		GFF3726	0.77	-1.0
3,770,479	-		GFF3726	0.77	+0.2
3,770,479	-		GFF3726	0.77	-0.2
3,770,479	-		GFF3726	0.77	-1.4
3,770,484	+		GFF3726	0.78	+0.4
3,770,484	+		GFF3726	0.78	-0.7
3,770,484	+		GFF3726	0.78	+1.4
3,770,484	+		GFF3726	0.78	+0.4
3,770,502	-		GFF3726	0.79	+0.7
3,770,517	-		GFF3726	0.80	-0.6
3,770,517	-		GFF3726	0.80	-0.8
3,770,523	+		GFF3726	0.81	-0.8
3,770,585	+		GFF3726	0.85	+1.1
3,770,586	-		GFF3726	0.86	+0.4
3,770,589	+		GFF3726	0.86	-0.6
3,770,589	+		GFF3726	0.86	-1.6
3,770,655	+				+1.2
3,770,663	-				+0.5
3,770,663	-				-0.8
3,770,663	-				+2.0
3,770,663	-				+0.8
3,770,665	+				-0.2
3,770,673	-				+0.2
3,770,673	-				+0.1
3,770,673	-				-1.2
3,770,736	-				+0.6
3,770,764	+				-0.3
3,770,764	+				+0.2
3,770,765	+				-0.6
3,770,772	-				+0.6
3,770,773	-				-0.2
3,770,773	-				+0.2
3,770,773	-				-1.5
3,770,774	+				+0.0
3,770,774	+				-1.1
3,770,774	+				+0.8
3,770,774	+				+2.1
3,770,774	+				-0.4
3,770,774	+				-0.6
3,770,774	+				-1.2
3,770,774	+				-0.5
3,770,774	+				-0.3
3,770,774	+				+1.1
3,770,774	+				+0.2
3,770,774	+				+1.8
3,770,775	+				+1.6
3,770,775	+				-1.4
3,770,780	+				-2.2
3,770,780	+				+0.1
3,770,780	+				-0.5
3,770,780	+				+0.4
3,770,781	+				+0.7
3,770,782	-				-0.6
3,770,782	-				-0.4
3,770,782	-				-0.4
3,770,782	-				-0.4
3,770,782	-				-0.6
3,770,782	-				+0.4
3,770,782	-				-0.5
3,770,782	-				+0.4
3,770,782	-				-1.3
3,770,782	-				-1.6
3,770,782	-				-1.5
3,770,782	-				+1.2
3,770,782	-				-0.2
3,770,782	-				-0.4
3,770,787	+				+1.0
3,770,788	-				-0.1
3,770,795	-				+0.1
3,770,807	-				+1.5
3,770,807	-				+0.1
3,770,809	+				+1.0
3,770,817	-				-0.8
3,770,822	+		GFF3727	0.11	-1.0
3,770,827	+		GFF3727	0.12	-0.9
3,770,827	+		GFF3727	0.12	-0.0
3,770,835	-		GFF3727	0.14	+0.7
3,770,840	+		GFF3727	0.16	+0.7
3,770,860	+		GFF3727	0.21	-2.1
3,770,863	-		GFF3727	0.22	-1.1
3,770,907	+		GFF3727	0.34	-0.5
3,770,907	+		GFF3727	0.34	+0.8
3,770,907	+		GFF3727	0.34	-0.1
3,770,907	+		GFF3727	0.34	-0.5
3,770,909	+		GFF3727	0.35	-0.0
3,770,915	-		GFF3727	0.36	-2.9
3,770,915	-		GFF3727	0.36	-1.2
3,770,915	-		GFF3727	0.36	+2.1
3,770,915	-		GFF3727	0.36	-2.2
3,770,915	-		GFF3727	0.36	-0.3
3,770,915	-		GFF3727	0.36	-0.9
3,770,915	-		GFF3727	0.36	-0.3
3,770,915	-		GFF3727	0.36	-0.5
3,770,915	-		GFF3727	0.36	+0.2
3,770,940	+		GFF3727	0.43	-1.7
3,770,945	+		GFF3727	0.45	+0.5
3,770,953	-		GFF3727	0.47	-1.7
3,770,963	+		GFF3727	0.50	-1.0
3,770,963	+		GFF3727	0.50	+0.4
3,770,963	+		GFF3727	0.50	-0.7
3,770,971	-		GFF3727	0.52	+0.4
3,770,978	+		GFF3727	0.54	+0.5
3,770,978	+		GFF3727	0.54	+0.0
3,770,981	-		GFF3727	0.55	-0.1
3,771,011	-		GFF3727	0.63	-0.8
3,771,022	-		GFF3727	0.66	-0.6
3,771,022	-		GFF3727	0.66	-2.3
3,771,047	+		GFF3727	0.73	-0.1
3,771,063	+		GFF3727	0.78	-0.2
3,771,070	+		GFF3727	0.79	+0.1
3,771,070	+		GFF3727	0.79	+0.2
3,771,070	+		GFF3727	0.79	+0.8
3,771,073	-		GFF3727	0.80	-1.0
3,771,078	-		GFF3727	0.82	+0.7
3,771,078	-		GFF3727	0.82	-0.0
3,771,078	-		GFF3727	0.82	+0.2
3,771,078	-		GFF3727	0.82	+0.5
3,771,078	-		GFF3727	0.82	+1.2
3,771,078	-		GFF3727	0.82	-0.2
3,771,078	-		GFF3727	0.82	-0.2
3,771,078	-		GFF3727	0.82	-0.6
3,771,078	-		GFF3727	0.82	+0.3
3,771,078	-		GFF3727	0.82	-0.8
3,771,082	+		GFF3727	0.83	-0.5
3,771,092	-		GFF3727	0.86	+1.1
3,771,092	-		GFF3727	0.86	+1.0
3,771,092	-		GFF3727	0.86	-1.6
3,771,092	-		GFF3727	0.86	+0.1
3,771,110	-				+1.0
3,771,120	+				+0.2
3,771,122	+				+1.5
3,771,122	+				-0.2
3,771,130	-				+0.7
3,771,130	-				+0.4
3,771,137	+				-0.2
3,771,137	+				+0.5
3,771,144	+				-1.2
3,771,162	+				+0.5
3,771,164	-				-1.0
3,771,189	+				+0.2
3,771,197	+				-1.3
3,771,197	-				+0.4
3,771,197	-				+0.3
3,771,197	-				-0.3
3,771,230	+				+1.0
3,771,238	+				-1.5
3,771,238	+				-0.6
3,771,238	-				+0.5
3,771,238	-				-0.3
3,771,244	-				-0.8
3,771,247	+				-1.8
3,771,271	+				+0.0
3,771,317	+				-0.0
3,771,317	+				-1.2
3,771,317	+				-1.2
3,771,317	+				+1.5
3,771,317	+				+0.1
3,771,325	-		GFF3728	0.10	+0.4
3,771,325	-		GFF3728	0.10	-2.0
3,771,325	-		GFF3728	0.10	+0.7
3,771,325	-		GFF3728	0.10	-0.3
3,771,325	-		GFF3728	0.10	-0.0
3,771,325	-		GFF3728	0.10	+0.2
3,771,335	+		GFF3728	0.11	-0.5
3,771,335	+		GFF3728	0.11	-0.2
3,771,347	-		GFF3728	0.11	+1.7
3,771,349	+		GFF3728	0.12	+0.4
3,771,349	+		GFF3728	0.12	+0.7
3,771,349	+		GFF3728	0.12	-0.6
3,771,349	+		GFF3728	0.12	+1.0
3,771,349	+		GFF3728	0.12	-0.0
3,771,349	+		GFF3728	0.12	+1.7
3,771,357	-		GFF3728	0.12	-0.7
3,771,357	-		GFF3728	0.12	-0.8
3,771,357	-		GFF3728	0.12	-0.2
3,771,357	-		GFF3728	0.12	-1.0
3,771,357	-		GFF3728	0.12	+0.2
3,771,357	-		GFF3728	0.12	+0.1
3,771,367	-		GFF3728	0.13	-0.8
3,771,383	+		GFF3728	0.13	-2.4
3,771,404	+		GFF3728	0.15	+1.1
3,771,407	+		GFF3728	0.15	-0.9
3,771,409	+		GFF3728	0.15	+0.5
3,771,455	-		GFF3728	0.18	-0.0
3,771,478	+		GFF3728	0.19	+0.9
3,771,486	-		GFF3728	0.19	+0.4
3,771,503	+		GFF3728	0.20	+0.7
3,771,522	+		GFF3728	0.21	+0.2
3,771,523	+		GFF3728	0.21	-0.9
3,771,528	+		GFF3728	0.22	+1.1
3,771,530	-		GFF3728	0.22	-2.2
3,771,531	+		GFF3728	0.22	+1.1
3,771,531	-		GFF3728	0.22	+0.2
3,771,533	+		GFF3728	0.22	-0.4
3,771,533	+		GFF3728	0.22	+1.1
3,771,533	+		GFF3728	0.22	+0.9
3,771,533	+		GFF3728	0.22	-0.2
3,771,533	+		GFF3728	0.22	+1.1
3,771,535	-		GFF3728	0.22	-0.1
3,771,536	-		GFF3728	0.22	-1.6
3,771,541	-		GFF3728	0.23	+1.2
3,771,541	-		GFF3728	0.23	-0.1
3,771,541	-		GFF3728	0.23	-0.8
3,771,541	-		GFF3728	0.23	+0.2
3,771,579	-		GFF3728	0.25	-0.9
3,771,582	+		GFF3728	0.25	+0.2
3,771,605	-		GFF3728	0.26	-0.1
3,771,619	-		GFF3728	0.27	-2.3
3,771,646	+		GFF3728	0.29	-0.8
3,771,665	-		GFF3728	0.30	+0.3
3,771,680	+		GFF3728	0.30	+0.5
3,771,681	-		GFF3728	0.31	+0.7
3,771,688	-		GFF3728	0.31	+1.0
3,771,714	-		GFF3728	0.32	-0.3
3,771,714	-		GFF3728	0.32	-0.3
3,771,725	+		GFF3728	0.33	+0.3
3,771,725	+		GFF3728	0.33	-1.1
3,771,725	+		GFF3728	0.33	+0.6
3,771,725	+		GFF3728	0.33	+1.1
3,771,733	-		GFF3728	0.34	-1.0
3,771,733	-		GFF3728	0.34	+0.0
3,771,733	-		GFF3728	0.34	+1.7
3,771,740	-		GFF3728	0.34	-0.1
3,771,742	+		GFF3728	0.34	+0.4
3,771,743	+		GFF3728	0.34	-1.7
3,771,744	+		GFF3728	0.34	-0.3
3,771,752	-		GFF3728	0.35	-0.1
3,771,772	-		GFF3728	0.36	-0.8
3,771,788	+		GFF3728	0.37	+0.7
3,771,788	+		GFF3728	0.37	-0.2
3,771,788	+		GFF3728	0.37	+0.8
3,771,788	+		GFF3728	0.37	-0.2
3,771,788	+		GFF3728	0.37	+0.3
3,771,788	+		GFF3728	0.37	+1.1
3,771,788	+		GFF3728	0.37	-0.9
3,771,788	+		GFF3728	0.37	-0.3
3,771,793	+		GFF3728	0.37	-0.0
3,771,796	-		GFF3728	0.37	+0.6
3,771,796	-		GFF3728	0.37	+0.0
3,771,796	-		GFF3728	0.37	-1.0
3,771,796	-		GFF3728	0.37	-0.2
3,771,796	-		GFF3728	0.37	-1.7
3,771,796	-		GFF3728	0.37	+1.0
3,771,796	-		GFF3728	0.37	-1.9
3,771,796	-		GFF3728	0.37	-0.9
3,771,796	-		GFF3728	0.37	-1.4
3,771,807	+		GFF3728	0.38	+0.9
3,771,831	-		GFF3728	0.39	-1.2
3,771,917	-		GFF3728	0.44	-2.1
3,771,926	+		GFF3728	0.45	-0.5
3,771,929	-		GFF3728	0.45	-0.6
3,771,942	+		GFF3728	0.45	-0.3
3,771,966	+		GFF3728	0.47	+0.2
3,771,968	+		GFF3728	0.47	+0.4
3,771,968	+		GFF3728	0.47	+0.5
3,771,973	+		GFF3728	0.47	-1.5
3,771,973	+		GFF3728	0.47	-2.0
3,771,973	+		GFF3728	0.47	+0.2
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