Strain Fitness in Sphingobium sp. HT1-2 around GFF3709

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,753,177	+		GFF3707	0.74	+0.6
3,753,177	+		GFF3707	0.74	-0.8
3,753,182	+		GFF3707	0.74	-0.2
3,753,182	+		GFF3707	0.74	-0.2
3,753,185	-		GFF3707	0.74	+1.5
3,753,185	-		GFF3707	0.74	-0.9
3,753,185	-		GFF3707	0.74	-0.2
3,753,205	+		GFF3707	0.76	+0.2
3,753,214	-		GFF3707	0.77	+0.0
3,753,237	+		GFF3707	0.79	-1.4
3,753,237	+		GFF3707	0.79	-0.6
3,753,238	+		GFF3707	0.79	-0.4
3,753,238	+		GFF3707	0.79	+0.5
3,753,238	+		GFF3707	0.79	+0.5
3,753,246	-		GFF3707	0.80	-0.9
3,753,250	+		GFF3707	0.80	-0.5
3,753,250	+		GFF3707	0.80	+0.8
3,753,271	+		GFF3707	0.82	-1.5
3,753,271	+		GFF3707	0.82	-1.4
3,753,273	-		GFF3707	0.82	+0.4
3,753,273	-		GFF3707	0.82	+0.2
3,753,279	+		GFF3707	0.83	-0.4
3,753,293	-		GFF3707	0.84	-0.5
3,753,295	+		GFF3707	0.84	-0.1
3,753,295	+		GFF3707	0.84	-0.4
3,753,303	-		GFF3707	0.85	+0.4
3,753,303	-		GFF3707	0.85	-1.5
3,753,305	+		GFF3707	0.85	+1.2
3,753,316	+		GFF3707	0.86	-1.4
3,753,316	+		GFF3707	0.86	+0.2
3,753,323	-		GFF3707	0.87	+1.0
3,753,324	-		GFF3707	0.87	-0.0
3,753,359	+		GFF3707	0.90	+0.8
3,753,359	+		GFF3707	0.90	-1.4
3,753,359	+		GFF3707	0.90	+0.6
3,753,359	+		GFF3707	0.90	-0.8
3,753,359	+		GFF3707	0.90	+0.6
3,753,365	-				-1.1
3,753,370	+				+0.9
3,753,439	+				-1.0
3,753,439	+				+0.2
3,753,444	+				-0.6
3,753,444	-				-1.1
3,753,458	+				+0.8
3,753,478	+				+0.1
3,753,478	+				+0.9
3,753,486	-				-0.3
3,753,505	+				-0.0
3,753,510	+				-1.3
3,753,510	+				-0.4
3,753,518	-				+0.4
3,753,540	-		GFF3708	0.10	-0.2
3,753,540	-		GFF3708	0.10	+1.1
3,753,547	+		GFF3708	0.11	+0.4
3,753,576	+		GFF3708	0.15	+0.8
3,753,576	+		GFF3708	0.15	-1.0
3,753,576	+		GFF3708	0.15	-1.9
3,753,584	-		GFF3708	0.17	-0.6
3,753,584	-		GFF3708	0.17	-0.1
3,753,584	-		GFF3708	0.17	+0.2
3,753,594	+		GFF3708	0.18	+0.2
3,753,603	+		GFF3708	0.19	-0.1
3,753,613	+		GFF3708	0.21	-0.2
3,753,620	+		GFF3708	0.22	+0.6
3,753,625	+		GFF3708	0.23	-2.2
3,753,626	-		GFF3708	0.23	-0.4
3,753,635	+		GFF3708	0.24	+0.5
3,753,638	-		GFF3708	0.25	+0.4
3,753,667	-		GFF3708	0.29	+0.1
3,753,669	+		GFF3708	0.29	+1.5
3,753,676	+		GFF3708	0.30	-1.5
3,753,676	+		GFF3708	0.30	-0.9
3,753,676	+		GFF3708	0.30	+0.2
3,753,676	+		GFF3708	0.30	+0.3
3,753,676	+		GFF3708	0.30	+1.0
3,753,676	+		GFF3708	0.30	-1.2
3,753,676	+		GFF3708	0.30	+0.7
3,753,678	-		GFF3708	0.30	+0.6
3,753,684	-		GFF3708	0.31	-1.8
3,753,686	+		GFF3708	0.32	+0.2
3,753,700	+		GFF3708	0.34	+0.1
3,753,703	-		GFF3708	0.34	-0.8
3,753,704	-		GFF3708	0.34	-0.2
3,753,726	-		GFF3708	0.37	-1.9
3,753,730	-		GFF3708	0.38	+0.2
3,753,743	-		GFF3708	0.40	+1.0
3,753,776	+		GFF3708	0.45	+0.8
3,753,778	-		GFF3708	0.45	+0.1
3,753,808	+		GFF3708	0.49	-0.6
3,753,809	-		GFF3708	0.50	+0.8
3,753,816	-		GFF3708	0.51	+0.5
3,753,816	-		GFF3708	0.51	+0.1
3,753,817	+		GFF3708	0.51	-1.9
3,753,817	+		GFF3708	0.51	+0.1
3,753,817	+		GFF3708	0.51	+0.4
3,753,817	+		GFF3708	0.51	-0.2
3,753,825	-		GFF3708	0.52	+0.3
3,753,838	-		GFF3708	0.54	-0.5
3,753,843	-		GFF3708	0.55	+0.2
3,753,845	+		GFF3708	0.55	-0.2
3,753,845	+		GFF3708	0.55	+0.3
3,753,845	+		GFF3708	0.55	+0.3
3,753,845	+		GFF3708	0.55	-0.4
3,753,845	+		GFF3708	0.55	-0.6
3,753,845	+		GFF3708	0.55	-0.2
3,753,845	+		GFF3708	0.55	+0.4
3,753,845	+		GFF3708	0.55	+0.1
3,753,845	+		GFF3708	0.55	+0.6
3,753,853	-		GFF3708	0.56	-0.8
3,753,853	-		GFF3708	0.56	-0.2
3,753,853	-		GFF3708	0.56	-1.1
3,753,853	-		GFF3708	0.56	-0.5
3,753,853	-		GFF3708	0.56	-1.3
3,753,853	-		GFF3708	0.56	-0.2
3,753,853	-		GFF3708	0.56	-0.9
3,753,853	-		GFF3708	0.56	+0.0
3,753,853	-		GFF3708	0.56	+0.7
3,753,853	-		GFF3708	0.56	-0.6
3,753,853	-		GFF3708	0.56	+1.2
3,753,878	-		GFF3708	0.60	+0.6
3,753,883	+		GFF3708	0.60	+0.3
3,753,891	-		GFF3708	0.62	+0.4
3,753,896	-		GFF3708	0.62	+0.0
3,753,896	-		GFF3708	0.62	-0.2
3,753,902	+		GFF3708	0.63	-1.6
3,753,915	-		GFF3708	0.65	+0.2
3,753,917	+		GFF3708	0.65	+0.6
3,753,917	+		GFF3708	0.65	-1.2
3,753,928	-		GFF3708	0.67	-1.3
3,753,963	+		GFF3708	0.72	-2.5
3,753,963	+		GFF3708	0.72	+0.7
3,753,963	+		GFF3708	0.72	-1.5
3,753,963	+		GFF3708	0.72	+0.2
3,753,963	+		GFF3708	0.72	-1.8
3,753,966	-		GFF3708	0.73	+0.3
3,753,966	-		GFF3708	0.73	+0.1
3,753,971	+		GFF3708	0.73	-1.7
3,753,971	-		GFF3708	0.73	-0.9
3,753,971	-		GFF3708	0.73	+0.2
3,753,971	-		GFF3708	0.73	-1.1
3,753,971	-		GFF3708	0.73	-0.3
3,753,979	-		GFF3708	0.75	-0.4
3,754,018	+		GFF3708	0.80	-2.3
3,754,026	-		GFF3708	0.81	+0.8
3,754,102	+				-1.1
3,754,102	+				+0.2
3,754,102	+				-0.8
3,754,110	+				-1.0
3,754,110	-				+1.6
3,754,110	-				+0.5
3,754,110	-				-2.2
3,754,119	-				-1.0
3,754,122	+				-0.8
3,754,124	-				+1.0
3,754,138	-				+0.8
3,754,138	-				-2.4
3,754,144	-				-0.4
3,754,166	+				+0.8
3,754,191	-				-0.4
3,754,200	+				+0.3
3,754,200	+				+0.2
3,754,208	-				+0.7
3,754,215	+				-1.9
3,754,218	-				+0.1
3,754,223	-				-0.6
3,754,230	-				-0.6
3,754,230	-				+0.0
3,754,233	-				+0.6
3,754,239	+		GFF3709	0.10	-0.4
3,754,256	-		GFF3709	0.12	+1.2
3,754,277	-		GFF3709	0.15	+0.4
3,754,277	-		GFF3709	0.15	-1.9
3,754,277	-		GFF3709	0.15	+1.0
3,754,277	-		GFF3709	0.15	+0.7
3,754,307	-		GFF3709	0.19	-0.6
3,754,311	-		GFF3709	0.19	-0.2
3,754,332	+		GFF3709	0.22	-3.2
3,754,337	+		GFF3709	0.22	+1.0
3,754,340	-		GFF3709	0.23	-0.3
3,754,340	-		GFF3709	0.23	+0.1
3,754,396	-		GFF3709	0.30	-1.0
3,754,398	-		GFF3709	0.30	-0.3
3,754,398	-		GFF3709	0.30	-0.9
3,754,404	-		GFF3709	0.31	+0.2
3,754,406	-		GFF3709	0.31	+0.5
3,754,421	-		GFF3709	0.33	-1.2
3,754,421	-		GFF3709	0.33	+0.7
3,754,421	-		GFF3709	0.33	+0.9
3,754,422	+		GFF3709	0.33	-1.1
3,754,449	-		GFF3709	0.37	+0.0
3,754,449	-		GFF3709	0.37	+0.2
3,754,458	+		GFF3709	0.38	+0.5
3,754,460	-		GFF3709	0.38	+0.4
3,754,469	+		GFF3709	0.39	-0.1
3,754,479	+		GFF3709	0.40	+1.3
3,754,479	+		GFF3709	0.40	+0.5
3,754,487	-		GFF3709	0.41	-2.0
3,754,497	+		GFF3709	0.43	-0.5
3,754,514	-		GFF3709	0.45	+0.3
3,754,549	+		GFF3709	0.49	+0.6
3,754,556	+		GFF3709	0.50	+0.9
3,754,556	+		GFF3709	0.50	-0.2
3,754,564	-		GFF3709	0.51	+1.0
3,754,568	+		GFF3709	0.52	-0.4
3,754,576	-		GFF3709	0.53	-0.7
3,754,600	+		GFF3709	0.56	+0.8
3,754,600	+		GFF3709	0.56	+0.6
3,754,601	+		GFF3709	0.56	+0.5
3,754,601	+		GFF3709	0.56	-0.1
3,754,601	+		GFF3709	0.56	-0.2
3,754,601	+		GFF3709	0.56	-0.3
3,754,601	+		GFF3709	0.56	-0.4
3,754,601	+		GFF3709	0.56	+1.2
3,754,601	+		GFF3709	0.56	-0.8
3,754,601	+		GFF3709	0.56	-0.1
3,754,601	+		GFF3709	0.56	-0.5
3,754,601	+		GFF3709	0.56	+1.2
3,754,601	+		GFF3709	0.56	+0.7
3,754,601	+		GFF3709	0.56	-1.9
3,754,608	-		GFF3709	0.57	-1.2
3,754,608	-		GFF3709	0.57	+0.1
3,754,608	-		GFF3709	0.57	+1.6
3,754,608	-		GFF3709	0.57	-0.4
3,754,609	-		GFF3709	0.57	-0.4
3,754,609	-		GFF3709	0.57	+0.4
3,754,609	-		GFF3709	0.57	+1.0
3,754,609	-		GFF3709	0.57	+0.1
3,754,609	-		GFF3709	0.57	-2.0
3,754,609	-		GFF3709	0.57	-0.2
3,754,609	-		GFF3709	0.57	-1.2
3,754,609	-		GFF3709	0.57	-0.2
3,754,641	-		GFF3709	0.61	-0.9
3,754,641	-		GFF3709	0.61	-1.1
3,754,659	+		GFF3709	0.63	+0.3
3,754,662	+		GFF3709	0.64	+0.3
3,754,664	+		GFF3709	0.64	-0.9
3,754,664	+		GFF3709	0.64	+0.8
3,754,664	+		GFF3709	0.64	+0.1
3,754,664	+		GFF3709	0.64	-0.2
3,754,664	+		GFF3709	0.64	-0.1
3,754,667	-		GFF3709	0.64	-0.4
3,754,672	-		GFF3709	0.65	-1.3
3,754,672	-		GFF3709	0.65	-1.0
3,754,672	-		GFF3709	0.65	-1.1
3,754,672	-		GFF3709	0.65	+1.5
3,754,672	-		GFF3709	0.65	+0.2
3,754,672	-		GFF3709	0.65	-0.5
3,754,697	-		GFF3709	0.68	+0.7
3,754,697	-		GFF3709	0.68	+0.5
3,754,709	-		GFF3709	0.70	+0.6
3,754,709	-		GFF3709	0.70	-2.4
3,754,723	+		GFF3709	0.71	+0.6
3,754,723	+		GFF3709	0.71	-0.4
3,754,731	-		GFF3709	0.72	-1.1
3,754,742	-		GFF3709	0.74	+1.0
3,754,742	-		GFF3709	0.74	-0.5
3,754,746	-		GFF3709	0.74	-2.2
3,754,752	-		GFF3709	0.75	-0.3
3,754,763	-		GFF3709	0.76	-0.4
3,754,789	-		GFF3709	0.80	-0.9
3,754,799	+		GFF3709	0.81	-0.1
3,754,811	+		GFF3709	0.83	-0.1
3,754,818	+		GFF3709	0.83	+0.8
3,754,819	-		GFF3709	0.84	-0.9
3,754,819	-		GFF3709	0.84	-0.2
3,754,830	+		GFF3709	0.85	+0.5
3,754,830	+		GFF3709	0.85	-0.3
3,754,830	+		GFF3709	0.85	+0.4
3,754,838	-		GFF3709	0.86	-0.4
3,754,838	-		GFF3709	0.86	-0.8
3,754,841	+		GFF3709	0.86	-0.8
3,754,854	+		GFF3709	0.88	-0.5
3,754,854	+		GFF3709	0.88	+1.1
3,754,862	-		GFF3709	0.89	+0.6
3,754,862	-		GFF3709	0.89	-0.1
3,754,862	-		GFF3709	0.89	+0.0
3,754,862	-		GFF3709	0.89	-0.7
3,754,914	-				+1.0
3,754,914	-				+2.0
3,754,917	+				+0.7
3,754,926	+				-0.7
3,754,934	-				+1.2
3,754,935	-				-0.1
3,754,941	-				-0.8
3,754,969	+				-1.4
3,754,979	+				+0.0
3,754,984	-				+0.2
3,755,047	+				-0.9
3,755,048	+				+0.4
3,755,054	+				-0.0
3,755,061	+				+0.3
3,755,069	+				+0.6
3,755,069	+				+0.9
3,755,069	-				+0.1
3,755,069	-				+0.0
3,755,077	-				-0.4
3,755,096	-		GFF3710	0.11	-1.2
3,755,098	+		GFF3710	0.11	-1.0
3,755,105	-		GFF3710	0.12	-0.4
3,755,106	-		GFF3710	0.12	+0.4
3,755,110	-		GFF3710	0.12	+0.4
3,755,115	-		GFF3710	0.13	-0.3
3,755,117	+		GFF3710	0.13	-0.0
3,755,117	+		GFF3710	0.13	+0.2
3,755,117	+		GFF3710	0.13	+1.2
3,755,117	+		GFF3710	0.13	-2.6
3,755,125	-		GFF3710	0.15	+0.0
3,755,125	-		GFF3710	0.15	+0.5
3,755,125	-		GFF3710	0.15	+1.0
3,755,145	+		GFF3710	0.17	-0.5
3,755,145	+		GFF3710	0.17	-0.0
3,755,171	-		GFF3710	0.21	-0.5
3,755,190	+		GFF3710	0.23	+0.4
3,755,206	+		GFF3710	0.25	-0.6
3,755,207	-		GFF3710	0.26	+0.3
3,755,214	-		GFF3710	0.26	+0.4
3,755,216	+		GFF3710	0.27	+0.4
3,755,226	+		GFF3710	0.28	-0.6
3,755,230	+		GFF3710	0.29	+0.7
3,755,230	+		GFF3710	0.29	-0.2
3,755,231	+		GFF3710	0.29	-0.2
3,755,231	+		GFF3710	0.29	+0.8
3,755,231	+		GFF3710	0.29	-0.4
3,755,231	+		GFF3710	0.29	+0.1
3,755,239	-		GFF3710	0.30	-1.5
3,755,239	-		GFF3710	0.30	+0.2
3,755,261	+		GFF3710	0.33	-1.1
3,755,271	+		GFF3710	0.34	-0.4
3,755,271	+		GFF3710	0.34	-0.9
3,755,271	+		GFF3710	0.34	+0.8
3,755,294	+		GFF3710	0.37	-0.6
3,755,312	+		GFF3710	0.40	-0.1
3,755,312	+		GFF3710	0.40	-2.3
3,755,322	+		GFF3710	0.41	-0.0
3,755,324	+		GFF3710	0.41	+0.2
3,755,324	+		GFF3710	0.41	+0.9
3,755,324	+		GFF3710	0.41	-1.2
3,755,332	-		GFF3710	0.42	+1.0
3,755,332	-		GFF3710	0.42	+1.0
3,755,333	+		GFF3710	0.42	+0.0
3,755,333	+		GFF3710	0.42	-1.3
3,755,333	+		GFF3710	0.42	-0.3
3,755,341	-		GFF3710	0.44	+1.6
3,755,341	-		GFF3710	0.44	-0.5
3,755,341	-		GFF3710	0.44	+0.9
3,755,363	+		GFF3710	0.47	-0.1
3,755,365	-		GFF3710	0.47	-1.9
3,755,365	-		GFF3710	0.47	-1.6
3,755,371	-		GFF3710	0.48	-1.1
3,755,371	-		GFF3710	0.48	-0.1
3,755,371	-		GFF3710	0.48	+0.1
3,755,381	-		GFF3710	0.49	-0.8
3,755,387	+		GFF3710	0.50	-2.4
3,755,387	+		GFF3710	0.50	+0.1
3,755,387	+		GFF3710	0.50	+0.2
3,755,394	-		GFF3710	0.51	+0.1
3,755,395	-		GFF3710	0.51	+1.6
3,755,395	-		GFF3710	0.51	-0.6
3,755,415	-		GFF3710	0.53	-1.0
3,755,419	+		GFF3710	0.54	+0.6
3,755,434	+		GFF3710	0.56	+0.5
3,755,434	+		GFF3710	0.56	+0.6
3,755,436	+		GFF3710	0.56	+0.7
3,755,442	+		GFF3710	0.57	-0.7
3,755,442	+		GFF3710	0.57	-1.2
3,755,442	+		GFF3710	0.57	-2.0
3,755,442	+		GFF3710	0.57	-1.8
3,755,449	-		GFF3710	0.58	-0.3
3,755,449	-		GFF3710	0.58	+0.6
3,755,449	-		GFF3710	0.58	-0.7
3,755,449	-		GFF3710	0.58	-1.8
3,755,450	-		GFF3710	0.58	+0.2
3,755,450	-		GFF3710	0.58	-0.3
3,755,450	-		GFF3710	0.58	-0.2
3,755,461	+		GFF3710	0.60	-0.2
3,755,469	-		GFF3710	0.61	-1.5
3,755,470	-		GFF3710	0.61	-0.0
3,755,477	-		GFF3710	0.62	-1.6
3,755,510	-		GFF3710	0.66	+0.4
3,755,510	-		GFF3710	0.66	+0.1
3,755,527	-		GFF3710	0.69	-1.9
3,755,573	-		GFF3710	0.75	+0.0
3,755,581	-		GFF3710	0.76	+0.9
3,755,581	-		GFF3710	0.76	+0.3
3,755,583	+		GFF3710	0.76	-0.3
3,755,583	+		GFF3710	0.76	+0.1
3,755,583	+		GFF3710	0.76	+0.1
3,755,585	+		GFF3710	0.76	+0.4
3,755,586	-		GFF3710	0.76	+0.4
3,755,590	+		GFF3710	0.77	+0.7
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3,755,591	-		GFF3710	0.77	-1.5
3,755,618	+		GFF3710	0.81	+0.1
3,755,626	-		GFF3710	0.82	-1.5
3,755,631	-		GFF3710	0.83	+0.3
3,755,669	+		GFF3710	0.88	-1.0
3,755,669	+		GFF3710	0.88	-0.4
3,755,677	-		GFF3710	0.89	-0.6
3,755,677	-		GFF3710	0.89	-1.0
3,755,677	-		GFF3710	0.89	-1.4
3,755,677	-		GFF3710	0.89	-1.4
3,755,713	-				+1.1
3,755,736	+				+0.1
3,755,749	-				-1.7
3,755,749	-				-0.4
3,755,751	-				+1.5
3,755,761	+				+0.5
3,755,762	+				-0.3
3,755,764	-				-1.7
3,755,770	-				+1.4
3,755,775	+				-0.0
3,755,776	+				-1.9
3,755,776	+				-0.1
3,755,776	-				-2.3
3,755,776	-				-0.4
3,755,778	-				+0.4
3,755,778	-				+0.6
3,755,778	-				+1.1
3,755,778	-				-1.3
3,755,778	-				+1.5
3,755,778	-				-0.3
3,755,778	-				+1.3
3,755,778	-				+0.2
3,755,783	-				+0.2
3,755,783	-				-1.2
3,755,783	-				-0.3
3,755,784	-				-1.0
3,755,789	-				-0.3
3,755,807	+				+0.4
3,755,807	+				-0.7
3,755,815	-				+0.6
3,755,827	-				-0.1
3,755,837	+				-0.5
3,755,838	+				+0.2
3,755,838	+				-0.4
3,755,846	-				+1.2
3,755,850	+				+1.0
3,755,855	+				+1.0
3,755,860	+				+1.8
3,755,863	-				+0.2
3,755,863	-				+1.1
3,755,865	+				-1.7
3,755,865	+				+0.4
3,755,880	+		GFF3711	0.11	+0.1
3,755,883	-		GFF3711	0.12	-0.7
3,755,897	+		GFF3711	0.13	-1.7
3,755,905	+		GFF3711	0.14	-0.0
3,755,912	-		GFF3711	0.15	-2.1
3,755,944	-		GFF3711	0.19	-0.8