Strain Fitness in Sphingobium sp. HT1-2 around GFF3692

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,736,577	+		GFF3690	0.71	-1.6
3,736,577	+		GFF3690	0.71	+0.4
3,736,577	+		GFF3690	0.71	-0.8
3,736,585	-		GFF3690	0.72	-0.2
3,736,585	-		GFF3690	0.72	-0.9
3,736,585	-		GFF3690	0.72	-1.1
3,736,614	+		GFF3690	0.75	-0.4
3,736,626	+		GFF3690	0.76	+0.4
3,736,631	-		GFF3690	0.77	+0.1
3,736,645	+		GFF3690	0.78	-0.8
3,736,647	+		GFF3690	0.78	+0.3
3,736,655	-		GFF3690	0.79	+0.1
3,736,658	+		GFF3690	0.80	+0.6
3,736,663	+		GFF3690	0.80	-0.9
3,736,683	+		GFF3690	0.82	-2.2
3,736,734	-		GFF3690	0.88	-1.3
3,736,746	+		GFF3690	0.89	+1.0
3,736,749	-		GFF3690	0.89	+0.7
3,736,751	+		GFF3690	0.90	-0.3
3,736,778	+				+0.4
3,736,782	-				+0.4
3,736,806	+				-1.8
3,736,807	+				-0.8
3,736,812	+				-0.8
3,736,812	+				-1.4
3,736,815	-				-0.9
3,736,834	-				-2.7
3,736,835	+				+1.3
3,736,835	+				-1.9
3,736,835	+				-1.2
3,736,835	+				-0.2
3,736,835	+				-1.2
3,736,843	-				-0.6
3,736,843	-				-1.2
3,736,843	-				+1.2
3,736,843	-				+0.5
3,736,843	-				+0.3
3,736,843	-				+0.7
3,736,844	-				+0.2
3,736,845	+				-1.2
3,736,845	+				+0.2
3,736,845	+				+1.5
3,736,845	+				-0.1
3,736,845	+				+0.6
3,736,853	-				-0.0
3,736,853	-				+0.0
3,736,853	-				-0.4
3,736,886	+				+0.2
3,736,886	+				-0.4
3,736,886	+				+0.3
3,736,886	+				+1.2
3,736,887	+				-1.6
3,736,894	-				-0.4
3,736,894	-				+0.2
3,736,894	-				-1.1
3,736,895	+		GFF3691	0.10	-1.0
3,736,895	+		GFF3691	0.10	-0.8
3,736,895	+		GFF3691	0.10	+0.8
3,736,903	-		GFF3691	0.12	-1.7
3,736,907	+		GFF3691	0.12	+0.2
3,736,919	+		GFF3691	0.15	-1.7
3,736,920	-		GFF3691	0.15	-0.4
3,736,927	-		GFF3691	0.16	-1.2
3,736,978	+		GFF3691	0.26	-0.4
3,736,986	-		GFF3691	0.28	-3.1
3,736,986	-		GFF3691	0.28	+0.4
3,736,993	-		GFF3691	0.29	+0.2
3,737,002	+		GFF3691	0.31	-1.0
3,737,010	+		GFF3691	0.33	+0.2
3,737,010	-		GFF3691	0.33	-1.1
3,737,010	-		GFF3691	0.33	-0.8
3,737,011	+		GFF3691	0.33	-0.4
3,737,047	+		GFF3691	0.40	-0.9
3,737,049	+		GFF3691	0.40	-2.1
3,737,057	+		GFF3691	0.42	+1.8
3,737,073	+		GFF3691	0.45	+0.4
3,737,092	+		GFF3691	0.49	-0.3
3,737,104	+		GFF3691	0.51	-0.7
3,737,112	-		GFF3691	0.53	-0.9
3,737,136	-		GFF3691	0.58	-1.0
3,737,136	-		GFF3691	0.58	+0.0
3,737,158	-		GFF3691	0.62	-0.5
3,737,165	+		GFF3691	0.63	+1.1
3,737,165	+		GFF3691	0.63	-1.0
3,737,173	-		GFF3691	0.65	-0.9
3,737,178	+		GFF3691	0.66	-1.2
3,737,182	-		GFF3691	0.67	-1.2
3,737,182	-		GFF3691	0.67	-0.1
3,737,184	+		GFF3691	0.67	-0.3
3,737,194	+		GFF3691	0.69	+0.5
3,737,218	+		GFF3691	0.74	-0.5
3,737,218	+		GFF3691	0.74	-1.1
3,737,218	+		GFF3691	0.74	-0.4
3,737,224	-		GFF3691	0.75	-1.2
3,737,224	-		GFF3691	0.75	-0.4
3,737,224	-		GFF3691	0.75	+0.6
3,737,226	-		GFF3691	0.75	-0.8
3,737,226	-		GFF3691	0.75	-1.0
3,737,226	-		GFF3691	0.75	+0.3
3,737,244	-		GFF3691	0.79	-0.4
3,737,265	+		GFF3691	0.83	-1.6
3,737,265	+		GFF3691	0.83	+0.5
3,737,298	+		GFF3691	0.90	-0.4
3,737,298	+		GFF3691	0.90	+0.6
3,737,306	-				-0.9
3,737,306	-				-0.4
3,737,329	+				-0.3
3,737,329	+				-1.2
3,737,329	+				-0.4
3,737,337	-				-0.5
3,737,337	-				-0.3
3,737,337	-				+1.1
3,737,415	-				-1.0
3,737,452	+				-0.8
3,737,509	+				+0.7
3,737,514	+				-0.4
3,737,517	-				+0.1
3,737,517	-				-0.2
3,737,522	-				-2.5
3,737,522	-				+0.8
3,737,524	+				-0.1
3,737,527	-				-0.2
3,737,532	+				-0.7
3,737,532	+				+0.1
3,737,532	+				-1.0
3,737,532	+				-0.9
3,737,532	+				+0.4
3,737,532	+				+0.6
3,737,532	+				+0.1
3,737,532	+				-2.0
3,737,532	+				-0.8
3,737,532	+				+0.4
3,737,532	+				-0.4
3,737,532	+				-0.1
3,737,532	+				-0.0
3,737,532	+				-0.4
3,737,532	+				-1.0
3,737,532	+				+0.4
3,737,532	+				-1.1
3,737,532	-				-1.4
3,737,540	-				-0.9
3,737,540	-				-2.1
3,737,540	-				+0.6
3,737,540	-				+0.6
3,737,549	+				+0.1
3,737,554	+				-1.2
3,737,557	-				-0.7
3,737,586	+				-0.5
3,737,594	-				+0.6
3,737,594	-				-1.8
3,737,608	+				-0.4
3,737,608	+				-0.9
3,737,608	+				+0.4
3,737,608	+				+1.1
3,737,608	+				+0.6
3,737,608	+				-0.6
3,737,608	+				+0.1
3,737,608	+				+0.2
3,737,608	+				-0.6
3,737,608	+				-1.7
3,737,608	+				+1.5
3,737,608	+				+1.6
3,737,616	-				+0.9
3,737,616	-				+0.6
3,737,616	-				+0.3
3,737,616	-				+0.4
3,737,616	-				+1.0
3,737,616	-				+0.8
3,737,616	-				-2.0
3,737,616	-				+0.4
3,737,616	-				-0.0
3,737,616	-				-1.3
3,737,616	-				-1.9
3,737,616	-				-1.9
3,737,616	-				+0.7
3,737,616	-				+0.3
3,737,616	-				+0.5
3,737,623	+				-0.4
3,737,623	+				-0.6
3,737,623	+				+1.2
3,737,623	+				-0.4
3,737,631	-		GFF3692	0.11	+0.9
3,737,631	-		GFF3692	0.11	+0.5
3,737,640	+		GFF3692	0.12	-0.3
3,737,648	-		GFF3692	0.13	-0.1
3,737,656	+		GFF3692	0.14	-1.9
3,737,656	+		GFF3692	0.14	-0.7
3,737,664	-		GFF3692	0.15	-1.9
3,737,666	+		GFF3692	0.15	+0.7
3,737,666	+		GFF3692	0.15	-1.3
3,737,666	+		GFF3692	0.15	-0.9
3,737,666	+		GFF3692	0.15	-1.5
3,737,666	+		GFF3692	0.15	+0.6
3,737,666	+		GFF3692	0.15	-0.2
3,737,666	+		GFF3692	0.15	-0.2
3,737,666	+		GFF3692	0.15	-1.9
3,737,666	+		GFF3692	0.15	-2.2
3,737,671	+		GFF3692	0.16	-0.4
3,737,674	-		GFF3692	0.17	-0.8
3,737,674	-		GFF3692	0.17	-1.2
3,737,674	-		GFF3692	0.17	+0.1
3,737,674	-		GFF3692	0.17	-1.4
3,737,674	-		GFF3692	0.17	-0.4
3,737,674	-		GFF3692	0.17	+0.6
3,737,674	-		GFF3692	0.17	+0.7
3,737,674	-		GFF3692	0.17	-0.4
3,737,681	+		GFF3692	0.17	+0.1
3,737,687	+		GFF3692	0.18	-1.7
3,737,693	+		GFF3692	0.19	+1.4
3,737,694	-		GFF3692	0.19	+1.5
3,737,701	-		GFF3692	0.20	-0.2
3,737,701	-		GFF3692	0.20	+0.8
3,737,701	-		GFF3692	0.20	+0.5
3,737,710	-		GFF3692	0.21	-1.4
3,737,725	-		GFF3692	0.23	-0.7
3,737,751	-		GFF3692	0.27	-0.7
3,737,770	+		GFF3692	0.29	-1.7
3,737,770	+		GFF3692	0.29	+0.4
3,737,770	+		GFF3692	0.29	+1.0
3,737,770	+		GFF3692	0.29	+0.7
3,737,778	-		GFF3692	0.30	-1.3
3,737,792	+		GFF3692	0.32	-1.5
3,737,797	+		GFF3692	0.33	-1.9
3,737,797	+		GFF3692	0.33	-0.3
3,737,797	+		GFF3692	0.33	-1.0
3,737,797	+		GFF3692	0.33	-0.0
3,737,797	+		GFF3692	0.33	+0.4
3,737,801	+		GFF3692	0.33	-1.8
3,737,805	-		GFF3692	0.34	-0.2
3,737,805	-		GFF3692	0.34	+0.9
3,737,805	-		GFF3692	0.34	+0.3
3,737,810	-		GFF3692	0.34	-0.9
3,737,849	-		GFF3692	0.39	-0.1
3,737,876	-		GFF3692	0.43	-1.6
3,737,878	+		GFF3692	0.43	+0.6
3,737,894	-		GFF3692	0.45	+0.5
3,737,905	+		GFF3692	0.47	-0.1
3,737,905	+		GFF3692	0.47	-1.6
3,737,905	+		GFF3692	0.47	+0.2
3,737,913	-		GFF3692	0.48	-0.8
3,737,913	-		GFF3692	0.48	-1.6
3,737,925	+		GFF3692	0.49	-0.6
3,737,925	-		GFF3692	0.49	+0.1
3,737,932	+		GFF3692	0.50	+0.1
3,737,935	-		GFF3692	0.51	+0.2
3,737,938	+		GFF3692	0.51	+0.8
3,737,939	+		GFF3692	0.51	-0.7
3,737,940	-		GFF3692	0.51	-0.5
3,737,979	+		GFF3692	0.56	-1.0
3,737,988	+		GFF3692	0.57	-0.0
3,737,989	-		GFF3692	0.58	+0.9
3,737,989	-		GFF3692	0.58	+0.5
3,738,018	+		GFF3692	0.61	-0.4
3,738,027	+		GFF3692	0.62	-1.6
3,738,027	+		GFF3692	0.62	-1.5
3,738,029	+		GFF3692	0.63	-1.2
3,738,035	-		GFF3692	0.64	+0.6
3,738,053	-		GFF3692	0.66	+0.3
3,738,053	-		GFF3692	0.66	-1.9
3,738,053	-		GFF3692	0.66	+0.3
3,738,053	-		GFF3692	0.66	+0.6
3,738,113	-		GFF3692	0.74	-2.4
3,738,122	-		GFF3692	0.75	+0.5
3,738,132	-		GFF3692	0.76	+0.7
3,738,145	+		GFF3692	0.78	+0.1
3,738,162	+		GFF3692	0.80	-2.1
3,738,162	+		GFF3692	0.80	-0.2
3,738,189	+		GFF3692	0.84	-2.2
3,738,200	+		GFF3692	0.85	-0.2
3,738,212	-		GFF3692	0.87	+0.6
3,738,212	-		GFF3692	0.87	+1.1
3,738,213	-		GFF3692	0.87	-1.7
3,738,222	-		GFF3692	0.88	-0.0
3,738,226	-		GFF3692	0.88	+0.9
3,738,227	+		GFF3692	0.89	+0.2
3,738,227	-		GFF3692	0.89	-0.6
3,738,235	-		GFF3692	0.90	-0.5
3,738,235	-		GFF3692	0.90	-1.3
3,738,250	-				+0.7
3,738,259	+				-0.7
3,738,259	+				+1.4
3,738,272	-				-0.9
3,738,272	-				-0.3
3,738,284	+				-0.1
3,738,292	-				+0.4
3,738,312	+				+0.1
3,738,315	-				+0.0
3,738,319	+				-0.3
3,738,319	+				+1.1
3,738,327	+				+0.4
3,738,332	-				+0.4
3,738,348	+				-1.3
3,738,368	+				+0.2
3,738,376	+				+0.6
3,738,377	+				-0.0
3,738,377	+				-2.1
3,738,385	-				+0.4
3,738,393	+		GFF3693	0.11	-0.4
3,738,437	-		GFF3693	0.45	+1.2
3,738,458	+		GFF3693	0.61	-1.0
3,738,463	+		GFF3693	0.65	+1.0
3,738,463	+		GFF3693	0.65	+0.5
3,738,463	+		GFF3693	0.65	+0.1
3,738,465	+		GFF3693	0.67	-0.6
3,738,465	+		GFF3693	0.67	-0.7
3,738,471	-		GFF3693	0.71	-0.1
3,738,471	-		GFF3693	0.71	+0.2
3,738,472	+		GFF3693	0.72	+0.1
3,738,480	-		GFF3693	0.78	-0.1
3,738,481	-		GFF3693	0.79	-1.1
3,738,481	-		GFF3693	0.79	+0.1
3,738,485	+		GFF3693	0.82	+0.4
3,738,485	+		GFF3693	0.82	+0.5
3,738,485	+		GFF3693	0.82	-0.1
3,738,485	+		GFF3693	0.82	-0.3
3,738,490	+		GFF3693	0.86	-0.7
3,738,490	+		GFF3693	0.86	-0.3
3,738,493	-		GFF3693	0.88	+1.0
3,738,493	-		GFF3693	0.88	-0.4
3,738,495	+				+0.3
3,738,495	+				+0.3
3,738,495	+				-0.5
3,738,496	+				-0.1
3,738,503	-				-0.2
3,738,503	-				-1.5
3,738,503	-				+1.0
3,738,523	-				-0.4
3,738,543	+				+1.3
3,738,544	-				-0.1
3,738,545	+				-0.4
3,738,545	+				-1.1
3,738,545	+				-0.5
3,738,545	+				+1.0
3,738,545	+				-0.8
3,738,551	-				-0.6
3,738,553	-				-1.0
3,738,553	-				-0.9
3,738,553	-				+0.5
3,738,561	+				-0.6
3,738,563	+				+0.8
3,738,629	+				-0.4
3,738,634	+				-2.2
3,738,634	+				-1.0
3,738,646	+				-0.9
3,738,662	-				-1.0
3,738,668	+				-0.7
3,738,668	+				-0.2
3,738,676	-				-0.2
3,738,687	+				+1.0
3,738,694	+				+1.7
3,738,695	-				+0.4
3,738,702	-				+0.1
3,738,702	-				+0.2
3,738,719	+				+1.3
3,738,719	+				-1.6
3,738,727	-				+1.1
3,738,727	-				+0.6
3,738,727	-				-0.4
3,738,727	-				+0.0
3,738,727	-				+1.2
3,738,729	-				-1.6
3,738,748	+				-0.4
3,738,756	-		GFF3694	0.11	+0.7
3,738,757	+		GFF3694	0.11	+0.4
3,738,765	-		GFF3694	0.12	-0.4
3,738,778	+		GFF3694	0.13	-0.9
3,738,778	+		GFF3694	0.13	-0.0
3,738,784	-		GFF3694	0.14	-0.9
3,738,786	-		GFF3694	0.14	+1.5
3,738,786	-		GFF3694	0.14	+0.4
3,738,786	-		GFF3694	0.14	+1.3
3,738,794	-		GFF3694	0.15	+0.1
3,738,855	+		GFF3694	0.21	+0.3
3,738,855	+		GFF3694	0.21	+0.5
3,738,855	+		GFF3694	0.21	+0.6
3,738,855	+		GFF3694	0.21	+0.3
3,738,861	+		GFF3694	0.21	+0.1
3,738,863	-		GFF3694	0.21	+0.3
3,738,863	-		GFF3694	0.21	+0.3
3,738,863	-		GFF3694	0.21	-1.4
3,738,863	-		GFF3694	0.21	-0.7
3,738,863	-		GFF3694	0.21	+0.9
3,738,863	-		GFF3694	0.21	+0.7
3,738,863	-		GFF3694	0.21	-0.5
3,738,863	-		GFF3694	0.21	-0.4
3,738,863	-		GFF3694	0.21	+0.4
3,738,863	-		GFF3694	0.21	-1.8
3,738,863	-		GFF3694	0.21	-0.7
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