Strain Fitness in Sphingobium sp. HT1-2 around GFF3684

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,725,908	+				-1.8
3,725,933	-				-1.4
3,725,946	+				+0.4
3,725,947	+				-0.7
3,725,954	-				-1.9
3,725,966	-				+0.5
3,725,975	+				+0.5
3,726,003	-		GFF3683	0.11	+0.6
3,726,014	+		GFF3683	0.12	-0.4
3,726,014	+		GFF3683	0.12	+0.2
3,726,022	-		GFF3683	0.13	-0.5
3,726,034	-		GFF3683	0.14	-1.5
3,726,035	+		GFF3683	0.15	+0.4
3,726,045	-		GFF3683	0.16	-0.9
3,726,045	-		GFF3683	0.16	+0.2
3,726,049	-		GFF3683	0.16	-0.1
3,726,056	+		GFF3683	0.17	-1.4
3,726,066	+		GFF3683	0.18	-1.1
3,726,074	-		GFF3683	0.18	-1.4
3,726,074	-		GFF3683	0.18	-0.4
3,726,087	-		GFF3683	0.20	-0.5
3,726,087	-		GFF3683	0.20	+0.2
3,726,120	+		GFF3683	0.23	+0.4
3,726,125	+		GFF3683	0.24	+0.5
3,726,133	-		GFF3683	0.24	-0.8
3,726,195	-		GFF3683	0.31	+0.1
3,726,200	-		GFF3683	0.31	-0.0
3,726,206	+		GFF3683	0.32	+1.2
3,726,216	+		GFF3683	0.33	-1.2
3,726,216	+		GFF3683	0.33	-0.2
3,726,216	+		GFF3683	0.33	+0.6
3,726,216	+		GFF3683	0.33	-0.5
3,726,216	+		GFF3683	0.33	-0.2
3,726,216	+		GFF3683	0.33	-0.6
3,726,216	+		GFF3683	0.33	-0.2
3,726,221	+		GFF3683	0.33	-0.0
3,726,221	+		GFF3683	0.33	-1.2
3,726,224	+		GFF3683	0.33	-0.1
3,726,224	-		GFF3683	0.33	-1.2
3,726,224	-		GFF3683	0.33	+0.5
3,726,224	-		GFF3683	0.33	+0.7
3,726,224	-		GFF3683	0.33	+0.0
3,726,224	-		GFF3683	0.33	-0.2
3,726,224	-		GFF3683	0.33	+1.2
3,726,224	-		GFF3683	0.33	-1.4
3,726,229	-		GFF3683	0.34	+0.5
3,726,229	-		GFF3683	0.34	+0.3
3,726,263	+		GFF3683	0.37	-0.2
3,726,263	-		GFF3683	0.37	+0.2
3,726,268	+		GFF3683	0.38	+0.1
3,726,268	+		GFF3683	0.38	+0.9
3,726,268	+		GFF3683	0.38	+0.5
3,726,268	+		GFF3683	0.38	+0.3
3,726,273	+		GFF3683	0.38	-0.1
3,726,273	+		GFF3683	0.38	+1.1
3,726,273	+		GFF3683	0.38	-1.1
3,726,276	-		GFF3683	0.39	+0.4
3,726,276	-		GFF3683	0.39	-0.0
3,726,278	+		GFF3683	0.39	-0.6
3,726,281	-		GFF3683	0.39	-2.0
3,726,317	+		GFF3683	0.43	-1.1
3,726,351	-		GFF3683	0.46	-0.7
3,726,354	-		GFF3683	0.46	-1.0
3,726,389	+		GFF3683	0.50	-1.2
3,726,397	-		GFF3683	0.51	-0.5
3,726,404	+		GFF3683	0.51	+0.5
3,726,404	+		GFF3683	0.51	-0.8
3,726,413	-		GFF3683	0.52	+0.8
3,726,422	+		GFF3683	0.53	+0.8
3,726,424	+		GFF3683	0.53	+1.4
3,726,436	+		GFF3683	0.55	+0.3
3,726,446	+		GFF3683	0.56	-0.6
3,726,483	-		GFF3683	0.59	-0.7
3,726,488	-		GFF3683	0.60	-0.0
3,726,495	+		GFF3683	0.60	-1.9
3,726,495	+		GFF3683	0.60	+0.5
3,726,496	+		GFF3683	0.61	-0.7
3,726,501	-		GFF3683	0.61	-0.7
3,726,504	-		GFF3683	0.61	+1.4
3,726,515	+		GFF3683	0.62	-1.4
3,726,515	+		GFF3683	0.62	-1.0
3,726,515	+		GFF3683	0.62	-0.2
3,726,515	+		GFF3683	0.62	-1.4
3,726,515	+		GFF3683	0.62	+1.1
3,726,519	+		GFF3683	0.63	-0.3
3,726,523	-		GFF3683	0.63	-0.1
3,726,540	+		GFF3683	0.65	-2.1
3,726,540	+		GFF3683	0.65	+0.0
3,726,547	+		GFF3683	0.66	+0.4
3,726,548	-		GFF3683	0.66	-0.5
3,726,555	-		GFF3683	0.66	+0.1
3,726,557	+		GFF3683	0.67	-1.4
3,726,563	+		GFF3683	0.67	+0.5
3,726,563	+		GFF3683	0.67	-0.1
3,726,565	-		GFF3683	0.67	+0.8
3,726,565	-		GFF3683	0.67	+1.0
3,726,565	-		GFF3683	0.67	-0.5
3,726,565	-		GFF3683	0.67	-1.3
3,726,571	-		GFF3683	0.68	-2.8
3,726,571	-		GFF3683	0.68	-1.4
3,726,587	+		GFF3683	0.70	-1.2
3,726,587	+		GFF3683	0.70	+0.9
3,726,590	-		GFF3683	0.70	+1.8
3,726,590	-		GFF3683	0.70	-0.4
3,726,590	-		GFF3683	0.70	-0.7
3,726,590	-		GFF3683	0.70	+1.5
3,726,590	-		GFF3683	0.70	+0.9
3,726,595	-		GFF3683	0.70	+0.8
3,726,595	-		GFF3683	0.70	-0.6
3,726,597	-		GFF3683	0.71	+0.3
3,726,603	-		GFF3683	0.71	-0.2
3,726,610	-		GFF3683	0.72	-0.3
3,726,611	-		GFF3683	0.72	-2.5
3,726,616	+		GFF3683	0.73	-0.1
3,726,616	+		GFF3683	0.73	-1.3
3,726,624	-		GFF3683	0.73	-0.7
3,726,651	+		GFF3683	0.76	-0.2
3,726,656	+		GFF3683	0.77	-1.9
3,726,656	+		GFF3683	0.77	-0.9
3,726,664	-		GFF3683	0.77	+0.1
3,726,664	-		GFF3683	0.77	+0.8
3,726,673	+		GFF3683	0.78	-0.2
3,726,674	-		GFF3683	0.78	-0.1
3,726,674	-		GFF3683	0.78	-1.2
3,726,674	-		GFF3683	0.78	-1.7
3,726,675	+		GFF3683	0.78	+0.7
3,726,681	-		GFF3683	0.79	-1.2
3,726,699	-		GFF3683	0.81	-1.2
3,726,701	+		GFF3683	0.81	-0.2
3,726,703	-		GFF3683	0.81	-0.1
3,726,709	-		GFF3683	0.82	-0.8
3,726,709	-		GFF3683	0.82	-0.4
3,726,732	-		GFF3683	0.84	-0.5
3,726,734	+		GFF3683	0.84	-0.5
3,726,734	+		GFF3683	0.84	-1.1
3,726,739	+		GFF3683	0.85	-0.6
3,726,739	+		GFF3683	0.85	+0.1
3,726,742	-		GFF3683	0.85	-1.7
3,726,742	-		GFF3683	0.85	-1.9
3,726,747	-		GFF3683	0.86	-1.8
3,726,747	-		GFF3683	0.86	+0.2
3,726,753	+		GFF3683	0.86	+0.0
3,726,780	-		GFF3683	0.89	-0.2
3,726,805	-				-0.7
3,726,839	+				-2.0
3,726,839	+				+0.8
3,726,839	+				+0.2
3,726,844	+				-0.5
3,726,844	+				-0.0
3,726,844	+				-1.2
3,726,844	+				+0.6
3,726,844	+				-0.6
3,726,847	-				+0.3
3,726,847	-				+0.1
3,726,847	-				+1.0
3,726,847	-				-1.0
3,726,847	-				+0.2
3,726,852	-				-0.3
3,726,881	-				-0.6
3,726,895	+				-2.6
3,726,895	+				-2.2
3,726,900	+				+0.6
3,726,903	-				+0.9
3,726,903	-				-2.1
3,726,941	+				+0.9
3,726,941	+				+0.3
3,726,948	-				-1.0
3,726,949	-				-1.5
3,727,024	+		GFF3684	0.11	-1.5
3,727,026	+		GFF3684	0.12	-0.4
3,727,026	+		GFF3684	0.12	+0.4
3,727,026	+		GFF3684	0.12	+0.2
3,727,026	+		GFF3684	0.12	-0.1
3,727,029	+		GFF3684	0.12	+0.4
3,727,034	-		GFF3684	0.12	+0.2
3,727,036	+		GFF3684	0.12	+0.1
3,727,036	+		GFF3684	0.12	-1.0
3,727,036	+		GFF3684	0.12	-1.2
3,727,043	+		GFF3684	0.13	-0.2
3,727,043	+		GFF3684	0.13	+0.6
3,727,044	-		GFF3684	0.13	-1.8
3,727,044	-		GFF3684	0.13	+0.6
3,727,044	-		GFF3684	0.13	-0.2
3,727,044	-		GFF3684	0.13	-0.0
3,727,073	-		GFF3684	0.16	+1.2
3,727,142	-		GFF3684	0.22	-2.5
3,727,145	-		GFF3684	0.22	-1.5
3,727,156	+		GFF3684	0.23	-1.5
3,727,156	+		GFF3684	0.23	+0.1
3,727,156	+		GFF3684	0.23	-0.4
3,727,164	-		GFF3684	0.24	+0.4
3,727,164	-		GFF3684	0.24	-0.0
3,727,179	-		GFF3684	0.25	-0.2
3,727,189	+		GFF3684	0.26	-0.2
3,727,189	+		GFF3684	0.26	-0.2
3,727,191	+		GFF3684	0.26	-0.4
3,727,197	-		GFF3684	0.27	+0.0
3,727,210	+		GFF3684	0.28	+0.0
3,727,222	+		GFF3684	0.29	-0.6
3,727,223	+		GFF3684	0.29	-1.8
3,727,223	+		GFF3684	0.29	-0.5
3,727,224	-		GFF3684	0.29	+0.2
3,727,230	-		GFF3684	0.30	-0.5
3,727,231	-		GFF3684	0.30	-2.0
3,727,231	-		GFF3684	0.30	+1.6
3,727,249	-		GFF3684	0.31	+0.0
3,727,296	+		GFF3684	0.36	-0.3
3,727,296	+		GFF3684	0.36	-1.3
3,727,304	-		GFF3684	0.36	-1.3
3,727,304	-		GFF3684	0.36	+0.1
3,727,321	+		GFF3684	0.38	-2.2
3,727,327	-		GFF3684	0.38	-1.2
3,727,342	+		GFF3684	0.40	+1.4
3,727,352	-		GFF3684	0.41	-1.1
3,727,352	-		GFF3684	0.41	+0.9
3,727,352	-		GFF3684	0.41	-1.0
3,727,373	-		GFF3684	0.43	+1.1
3,727,378	+		GFF3684	0.43	-2.1
3,727,396	+		GFF3684	0.45	+1.0
3,727,404	-		GFF3684	0.45	+0.5
3,727,410	+		GFF3684	0.46	+0.0
3,727,411	+		GFF3684	0.46	+0.5
3,727,418	-		GFF3684	0.47	-0.2
3,727,419	-		GFF3684	0.47	-0.2
3,727,426	+		GFF3684	0.47	-0.3
3,727,426	+		GFF3684	0.47	+0.0
3,727,426	+		GFF3684	0.47	+0.1
3,727,426	+		GFF3684	0.47	+0.7
3,727,426	+		GFF3684	0.47	+1.2
3,727,426	+		GFF3684	0.47	-0.4
3,727,426	+		GFF3684	0.47	-0.2
3,727,426	+		GFF3684	0.47	+0.6
3,727,426	+		GFF3684	0.47	+0.5
3,727,426	+		GFF3684	0.47	+1.3
3,727,426	+		GFF3684	0.47	+0.8
3,727,426	+		GFF3684	0.47	-0.7
3,727,426	+		GFF3684	0.47	+0.0
3,727,426	+		GFF3684	0.47	-2.3
3,727,426	+		GFF3684	0.47	+1.1
3,727,434	-		GFF3684	0.48	+1.4
3,727,434	-		GFF3684	0.48	-2.8
3,727,434	-		GFF3684	0.48	+0.8
3,727,434	-		GFF3684	0.48	+0.1
3,727,434	-		GFF3684	0.48	-0.1
3,727,434	-		GFF3684	0.48	+0.8
3,727,434	-		GFF3684	0.48	-1.6
3,727,434	-		GFF3684	0.48	+0.6
3,727,434	-		GFF3684	0.48	+0.4
3,727,434	-		GFF3684	0.48	+0.9
3,727,434	-		GFF3684	0.48	-0.5
3,727,434	-		GFF3684	0.48	-1.8
3,727,434	-		GFF3684	0.48	-0.4
3,727,434	-		GFF3684	0.48	-0.8
3,727,434	-		GFF3684	0.48	-0.6
3,727,434	-		GFF3684	0.48	-0.1
3,727,434	-		GFF3684	0.48	-2.6
3,727,434	-		GFF3684	0.48	+0.1
3,727,434	-		GFF3684	0.48	-1.8
3,727,435	+		GFF3684	0.48	+0.9
3,727,436	-		GFF3684	0.48	-0.7
3,727,443	-		GFF3684	0.49	+0.9
3,727,443	-		GFF3684	0.49	+0.2
3,727,523	+		GFF3684	0.56	-0.1
3,727,536	+		GFF3684	0.57	-1.6
3,727,540	+		GFF3684	0.57	+0.6
3,727,540	+		GFF3684	0.57	-1.4
3,727,541	+		GFF3684	0.58	+0.3
3,727,549	-		GFF3684	0.58	-2.0
3,727,556	-		GFF3684	0.59	-0.7
3,727,668	-		GFF3684	0.69	+0.1
3,727,760	-		GFF3684	0.77	+0.1
3,727,767	-		GFF3684	0.78	-1.4
3,727,767	-		GFF3684	0.78	-0.6
3,727,796	+		GFF3684	0.80	-1.7
3,727,796	+		GFF3684	0.80	+0.8
3,727,796	+		GFF3684	0.80	-1.3
3,727,804	-		GFF3684	0.81	+0.0
3,727,804	-		GFF3684	0.81	+0.5
3,727,814	-		GFF3684	0.82	-0.4
3,727,820	+		GFF3684	0.82	+0.2
3,727,820	+		GFF3684	0.82	-0.5
3,727,820	+		GFF3684	0.82	-0.1
3,727,820	+		GFF3684	0.82	+0.4
3,727,820	+		GFF3684	0.82	-0.5
3,727,825	+		GFF3684	0.83	+1.4
3,727,825	+		GFF3684	0.83	+0.4
3,727,825	+		GFF3684	0.83	+0.2
3,727,828	-		GFF3684	0.83	-1.1
3,727,861	+		GFF3684	0.86	+0.9
3,727,895	+		GFF3684	0.89	+0.4
3,727,895	-		GFF3684	0.89	+0.2
3,727,916	+				-1.7
3,727,916	+				+0.6
3,727,924	-				-0.4
3,727,941	-				-0.9
3,727,941	-				-0.4
3,727,964	-				-1.4
3,727,969	-				-0.7
3,727,986	+				-0.9
3,727,989	+				-0.2
3,727,995	-				-0.6
3,728,000	-				-2.1
3,728,024	+				+0.4
3,728,029	+				+1.2
3,728,037	-				-0.2
3,728,047	-				-0.4
3,728,047	-				+0.3
3,728,048	+				-1.2
3,728,048	+				-0.1
3,728,067	+				-0.6
3,728,077	+				-0.3
3,728,120	+				-1.1
3,728,122	-				-0.7
3,728,133	+				-0.4
3,728,133	+				+0.2
3,728,133	+				-0.7
3,728,133	+				+0.5
3,728,133	+				-1.7
3,728,141	-				-1.5
3,728,141	-				-0.1
3,728,141	-				+0.5
3,728,141	-				+0.1
3,728,150	+				-0.5
3,728,158	-				-1.4
3,728,168	-				-0.1
3,728,168	-				+1.0
3,728,168	-				-0.6
3,728,168	-				-1.7
3,728,197	+				-0.4
3,728,235	-				+0.2
3,728,238	+				-0.5
3,728,263	-				-0.8
3,728,301	-				-2.2
3,728,302	-				-0.9
3,728,326	+				+0.6
3,728,326	+				-0.1
3,728,351	-				+0.6
3,728,351	-				-0.4
3,728,354	+				-1.0
3,728,356	-				+0.2
3,728,361	-				-1.1
3,728,391	-				+0.8
3,728,406	-		GFF3685	0.10	+1.0
3,728,406	-		GFF3685	0.10	-0.5
3,728,418	-		GFF3685	0.11	-1.5
3,728,434	+		GFF3685	0.12	-0.4
3,728,434	+		GFF3685	0.12	+1.4
3,728,434	+		GFF3685	0.12	+0.8
3,728,434	+		GFF3685	0.12	+0.2
3,728,434	+		GFF3685	0.12	+0.2
3,728,434	+		GFF3685	0.12	-2.4
3,728,434	+		GFF3685	0.12	+0.0
3,728,434	+		GFF3685	0.12	-1.6
3,728,434	+		GFF3685	0.12	-2.4
3,728,442	-		GFF3685	0.12	-1.9
3,728,442	-		GFF3685	0.12	-0.1
3,728,442	-		GFF3685	0.12	+0.0
3,728,449	+		GFF3685	0.12	+0.5
3,728,454	+		GFF3685	0.13	-0.2
3,728,454	+		GFF3685	0.13	+0.1
3,728,462	-		GFF3685	0.13	-1.2
3,728,479	-		GFF3685	0.14	-0.2
3,728,496	+		GFF3685	0.15	+0.4
3,728,501	+		GFF3685	0.15	+0.4
3,728,510	-		GFF3685	0.15	-1.2
3,728,548	+		GFF3685	0.17	-0.8
3,728,548	+		GFF3685	0.17	-1.6
3,728,551	-		GFF3685	0.17	-0.7
3,728,556	+		GFF3685	0.17	-1.4
3,728,556	+		GFF3685	0.17	-1.3
3,728,556	+		GFF3685	0.17	-1.3
3,728,556	-		GFF3685	0.17	-1.4
3,728,556	-		GFF3685	0.17	-0.1
3,728,564	-		GFF3685	0.18	+1.6
3,728,564	-		GFF3685	0.18	+0.2
3,728,566	+		GFF3685	0.18	-1.2
3,728,608	-		GFF3685	0.20	-0.9
3,728,615	+		GFF3685	0.20	-0.4
3,728,620	+		GFF3685	0.20	+1.0
3,728,621	+		GFF3685	0.20	+0.8
3,728,628	-		GFF3685	0.21	+0.0
3,728,628	-		GFF3685	0.21	-0.7
3,728,629	-		GFF3685	0.21	-0.2
3,728,629	-		GFF3685	0.21	-0.8
3,728,649	-		GFF3685	0.22	-1.8
3,728,663	-		GFF3685	0.22	-0.9
3,728,668	-		GFF3685	0.23	-0.9
3,728,681	+		GFF3685	0.23	-1.4
3,728,689	-		GFF3685	0.23	-1.2
3,728,689	-		GFF3685	0.23	-0.3
3,728,731	+		GFF3685	0.25	-0.4
3,728,737	+		GFF3685	0.26	-0.0
3,728,737	+		GFF3685	0.26	+0.0
3,728,737	+		GFF3685	0.26	-1.1
3,728,737	+		GFF3685	0.26	+0.8
3,728,737	+		GFF3685	0.26	+0.9
3,728,744	+		GFF3685	0.26	+0.2
3,728,744	+		GFF3685	0.26	-0.3
3,728,744	+		GFF3685	0.26	+0.1
3,728,745	-		GFF3685	0.26	+0.7
3,728,752	-		GFF3685	0.26	-1.1
3,728,752	-		GFF3685	0.26	-1.2
3,728,752	-		GFF3685	0.26	+0.3
3,728,770	+		GFF3685	0.27	-0.4
3,728,782	-		GFF3685	0.28	-1.9
3,728,784	+		GFF3685	0.28	-0.6
3,728,789	+		GFF3685	0.28	-2.4
3,728,789	+		GFF3685	0.28	-0.4
3,728,797	-		GFF3685	0.28	+0.0
3,728,878	+		GFF3685	0.32	-1.0
3,728,897	-		GFF3685	0.33	-0.9
3,728,899	+		GFF3685	0.33	-0.8
3,728,900	+		GFF3685	0.33	-1.9
3,728,900	+		GFF3685	0.33	-1.2
3,728,900	+		GFF3685	0.33	-0.8
3,728,900	+		GFF3685	0.33	+0.5
3,728,900	+		GFF3685	0.33	-2.4
3,728,900	+		GFF3685	0.33	-1.6
3,728,900	+		GFF3685	0.33	-1.0
3,728,900	+		GFF3685	0.33	-1.6
3,728,900	+		GFF3685	0.33	+0.2
3,728,900	+		GFF3685	0.33	+0.6
3,728,900	+		GFF3685	0.33	+0.2
3,728,900	+		GFF3685	0.33	-0.3
3,728,900	+		GFF3685	0.33	-2.4
3,728,907	-		GFF3685	0.34	-2.6
3,728,908	-		GFF3685	0.34	-0.6
3,728,908	-		GFF3685	0.34	-1.2
3,728,908	-		GFF3685	0.34	+1.1
3,728,908	-		GFF3685	0.34	-0.5
3,728,908	-		GFF3685	0.34	-0.1
3,728,908	-		GFF3685	0.34	+0.1
3,728,908	-		GFF3685	0.34	-0.2
3,728,908	-		GFF3685	0.34	-0.1
3,728,908	-		GFF3685	0.34	-2.4
3,728,908	-		GFF3685	0.34	-1.2
3,728,908	-		GFF3685	0.34	+0.2
3,728,908	-		GFF3685	0.34	+1.8
3,728,908	-		GFF3685	0.34	+0.8
3,728,908	-		GFF3685	0.34	-1.9
3,728,923	+		GFF3685	0.34	+0.4
3,728,935	+		GFF3685	0.35	+0.7
3,728,945	-		GFF3685	0.35	-1.4
3,728,949	+		GFF3685	0.36	-1.3
3,728,949	+		GFF3685	0.36	+0.2
3,728,957	-		GFF3685	0.36	+0.2
3,728,957	-		GFF3685	0.36	-1.2
3,728,957	-		GFF3685	0.36	+0.5
3,728,962	+		GFF3685	0.36	-0.2
3,728,969	-		GFF3685	0.36	-0.1
3,728,972	+		GFF3685	0.37	-1.9
3,728,995	+		GFF3685	0.38	-1.6
3,729,009	+		GFF3685	0.38	-0.1