Strain Fitness in Sphingobium sp. HT1-2 around GFF3664

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,706,356	-		GFF3663	0.11	+0.8
3,706,364	-		GFF3663	0.12	-1.0
3,706,364	-		GFF3663	0.12	+0.4
3,706,364	-		GFF3663	0.12	-0.8
3,706,373	+		GFF3663	0.13	-0.2
3,706,390	+		GFF3663	0.14	+1.1
3,706,437	-		GFF3663	0.19	-0.1
3,706,445	-		GFF3663	0.19	+0.8
3,706,446	+		GFF3663	0.20	+1.1
3,706,454	-		GFF3663	0.20	-0.7
3,706,454	-		GFF3663	0.20	-0.6
3,706,461	+		GFF3663	0.21	-0.3
3,706,469	-		GFF3663	0.22	-0.1
3,706,476	+		GFF3663	0.22	+0.1
3,706,485	+		GFF3663	0.23	-0.5
3,706,491	+		GFF3663	0.24	-1.8
3,706,496	+		GFF3663	0.24	+0.1
3,706,504	-		GFF3663	0.25	-0.8
3,706,541	+		GFF3663	0.28	-0.4
3,706,554	+		GFF3663	0.29	-0.2
3,706,561	+		GFF3663	0.30	-1.2
3,706,563	-		GFF3663	0.30	-0.2
3,706,585	+		GFF3663	0.32	+0.4
3,706,585	+		GFF3663	0.32	+0.6
3,706,593	-		GFF3663	0.33	-1.5
3,706,593	-		GFF3663	0.33	+0.4
3,706,593	-		GFF3663	0.33	-0.6
3,706,614	+		GFF3663	0.35	+0.0
3,706,629	+		GFF3663	0.36	+0.4
3,706,641	+		GFF3663	0.37	-1.0
3,706,660	+		GFF3663	0.39	+0.4
3,706,666	+		GFF3663	0.40	-0.6
3,706,666	+		GFF3663	0.40	-1.0
3,706,666	+		GFF3663	0.40	-0.7
3,706,666	+		GFF3663	0.40	+0.5
3,706,688	+		GFF3663	0.42	-0.3
3,706,765	+		GFF3663	0.49	-0.6
3,706,765	+		GFF3663	0.49	-0.0
3,706,765	+		GFF3663	0.49	+0.2
3,706,773	-		GFF3663	0.50	+0.5
3,706,792	-		GFF3663	0.51	-0.2
3,706,800	+		GFF3663	0.52	-0.1
3,706,800	+		GFF3663	0.52	-0.5
3,706,802	+		GFF3663	0.52	-0.5
3,706,805	-		GFF3663	0.53	-1.4
3,706,808	-		GFF3663	0.53	-0.5
3,706,808	-		GFF3663	0.53	-0.5
3,706,810	-		GFF3663	0.53	-0.2
3,706,813	-		GFF3663	0.53	-0.4
3,706,832	+		GFF3663	0.55	-0.1
3,706,832	+		GFF3663	0.55	-1.2
3,706,832	+		GFF3663	0.55	-1.9
3,706,832	+		GFF3663	0.55	+0.6
3,706,840	+		GFF3663	0.56	-1.9
3,706,840	+		GFF3663	0.56	-1.6
3,706,840	-		GFF3663	0.56	+0.8
3,706,840	-		GFF3663	0.56	+0.9
3,706,840	-		GFF3663	0.56	-1.4
3,706,848	-		GFF3663	0.56	+1.8
3,706,853	+		GFF3663	0.57	-1.9
3,706,883	-		GFF3663	0.60	-0.8
3,706,883	-		GFF3663	0.60	+0.6
3,706,907	-		GFF3663	0.62	+0.8
3,706,910	+		GFF3663	0.62	-0.0
3,706,916	+		GFF3663	0.63	-1.1
3,706,916	-		GFF3663	0.63	-2.7
3,706,931	+		GFF3663	0.64	-0.0
3,706,941	-		GFF3663	0.65	-2.4
3,706,959	-		GFF3663	0.67	+1.4
3,706,967	-		GFF3663	0.67	+0.2
3,706,978	-		GFF3663	0.68	-0.7
3,706,989	-		GFF3663	0.69	+0.4
3,706,991	+		GFF3663	0.70	-0.1
3,706,998	+		GFF3663	0.70	-0.8
3,706,999	+		GFF3663	0.70	+0.5
3,707,014	+		GFF3663	0.72	-1.7
3,707,014	+		GFF3663	0.72	+0.6
3,707,014	+		GFF3663	0.72	+0.5
3,707,027	-		GFF3663	0.73	-1.9
3,707,030	-		GFF3663	0.73	+0.2
3,707,034	+		GFF3663	0.74	-0.7
3,707,061	-		GFF3663	0.76	+0.2
3,707,061	-		GFF3663	0.76	-1.1
3,707,107	+		GFF3663	0.80	-0.6
3,707,110	-		GFF3663	0.81	+1.1
3,707,115	-		GFF3663	0.81	+0.5
3,707,115	-		GFF3663	0.81	-1.9
3,707,131	+		GFF3663	0.82	-0.6
3,707,139	-		GFF3663	0.83	-0.2
3,707,144	-		GFF3663	0.84	-0.8
3,707,144	-		GFF3663	0.84	-0.2
3,707,154	-		GFF3663	0.85	-0.1
3,707,154	-		GFF3663	0.85	+0.2
3,707,203	+		GFF3663	0.89	+0.4
3,707,207	+		GFF3663	0.89	+0.4
3,707,209	+		GFF3663	0.90	-3.1
3,707,209	+		GFF3663	0.90	+1.9
3,707,217	-				+0.1
3,707,221	-				-0.5
3,707,228	+				+0.5
3,707,234	+				-0.3
3,707,236	-				-1.8
3,707,237	-				-1.7
3,707,242	-				-2.5
3,707,285	-				-0.5
3,707,336	+				-0.4
3,707,336	-				-0.5
3,707,341	-				+1.2
3,707,349	+				-1.3
3,707,359	-				+0.4
3,707,370	+				-1.2
3,707,401	+		GFF3664	0.13	-1.8
3,707,437	+		GFF3664	0.23	-2.9
3,707,437	+		GFF3664	0.23	+0.2
3,707,441	+		GFF3664	0.24	-0.3
3,707,445	-		GFF3664	0.25	-0.6
3,707,445	-		GFF3664	0.25	+0.0
3,707,459	+		GFF3664	0.29	-2.0
3,707,460	-		GFF3664	0.29	+1.0
3,707,484	-		GFF3664	0.36	+0.4
3,707,485	+		GFF3664	0.36	-0.0
3,707,493	-		GFF3664	0.38	-1.2
3,707,499	+		GFF3664	0.40	+0.0
3,707,499	+		GFF3664	0.40	+1.0
3,707,500	+		GFF3664	0.40	-2.0
3,707,527	+		GFF3664	0.48	-0.1
3,707,535	-		GFF3664	0.50	+0.8
3,707,537	+		GFF3664	0.50	+0.6
3,707,538	+		GFF3664	0.51	-0.2
3,707,543	+		GFF3664	0.52	+0.0
3,707,543	+		GFF3664	0.52	-0.3
3,707,543	+		GFF3664	0.52	+0.7
3,707,543	+		GFF3664	0.52	+0.6
3,707,543	+		GFF3664	0.52	-0.6
3,707,543	+		GFF3664	0.52	-0.0
3,707,543	+		GFF3664	0.52	-0.3
3,707,543	+		GFF3664	0.52	-0.4
3,707,543	+		GFF3664	0.52	+0.6
3,707,543	+		GFF3664	0.52	-0.1
3,707,543	+		GFF3664	0.52	+0.1
3,707,543	+		GFF3664	0.52	-0.1
3,707,543	+		GFF3664	0.52	+0.5
3,707,543	+		GFF3664	0.52	-0.5
3,707,543	+		GFF3664	0.52	-0.1
3,707,543	+		GFF3664	0.52	-1.4
3,707,543	+		GFF3664	0.52	-1.2
3,707,551	-		GFF3664	0.54	-0.6
3,707,551	-		GFF3664	0.54	-1.3
3,707,551	-		GFF3664	0.54	+0.6
3,707,551	-		GFF3664	0.54	-0.3
3,707,551	-		GFF3664	0.54	-1.3
3,707,551	-		GFF3664	0.54	-2.4
3,707,551	-		GFF3664	0.54	-0.2
3,707,551	-		GFF3664	0.54	+1.4
3,707,551	-		GFF3664	0.54	+0.7
3,707,551	-		GFF3664	0.54	-0.6
3,707,551	-		GFF3664	0.54	-2.8
3,707,551	-		GFF3664	0.54	-0.8
3,707,576	+		GFF3664	0.61	-1.9
3,707,588	-		GFF3664	0.64	+1.9
3,707,589	+		GFF3664	0.64	+0.6
3,707,589	+		GFF3664	0.64	-0.1
3,707,589	+		GFF3664	0.64	-0.8
3,707,602	-		GFF3664	0.68	-2.7
3,707,620	+		GFF3664	0.73	-0.1
3,707,628	-		GFF3664	0.75	+0.1
3,707,639	+		GFF3664	0.78	-0.7
3,707,653	+		GFF3664	0.82	-1.2
3,707,661	-		GFF3664	0.84	+0.1
3,707,661	-		GFF3664	0.84	-2.1
3,707,661	-		GFF3664	0.84	-2.0
3,707,682	+				+0.1
3,707,689	+				+0.9
3,707,692	-				-1.0
3,707,695	-				+0.2
3,707,697	-				-1.0
3,707,713	-				-2.2
3,707,715	+				+0.3
3,707,718	+				-0.4
3,707,723	+				+0.3
3,707,726	-				-0.2
3,707,728	-				-3.2
3,707,745	+				-0.2
3,707,755	+				+0.5
3,707,755	+				-1.7
3,707,755	+				+1.6
3,707,759	+				-0.8
3,707,759	+				-1.9
3,707,763	-				-0.0
3,707,772	+				-1.5
3,707,792	-				-0.5
3,707,830	+				-0.5
3,707,836	+				+0.7
3,707,836	+				-0.7
3,707,836	+				-0.9
3,707,844	-				-0.9
3,707,852	-				+0.3
3,707,856	+				-0.4
3,707,861	-				+0.5
3,707,861	-				+0.6
3,707,871	+				+0.4
3,707,875	+				+0.2
3,707,875	+				+0.2
3,707,875	+				+0.8
3,707,875	+				+0.6
3,707,881	+		GFF3665	0.10	-0.7
3,707,882	+		GFF3665	0.10	+1.4
3,707,883	-		GFF3665	0.10	-1.4
3,707,883	-		GFF3665	0.10	+0.2
3,707,908	-		GFF3665	0.13	-1.8
3,707,922	+		GFF3665	0.14	+0.6
3,707,941	+		GFF3665	0.16	+0.4
3,707,941	+		GFF3665	0.16	+1.0
3,707,941	+		GFF3665	0.16	-0.2
3,707,941	+		GFF3665	0.16	-0.8
3,707,946	+		GFF3665	0.16	-0.5
3,707,946	+		GFF3665	0.16	-0.5
3,707,949	-		GFF3665	0.17	+0.4
3,707,954	-		GFF3665	0.17	-0.1
3,707,954	-		GFF3665	0.17	-0.3
3,707,954	-		GFF3665	0.17	+1.3
3,707,969	+		GFF3665	0.18	-0.7
3,707,974	+		GFF3665	0.19	-1.6
3,707,974	+		GFF3665	0.19	+0.1
3,708,019	+		GFF3665	0.23	-0.4
3,708,019	+		GFF3665	0.23	-1.4
3,708,019	+		GFF3665	0.23	+1.3
3,708,019	+		GFF3665	0.23	+0.8
3,708,019	+		GFF3665	0.23	+0.2
3,708,019	+		GFF3665	0.23	-1.7
3,708,019	+		GFF3665	0.23	-0.0
3,708,019	+		GFF3665	0.23	-0.8
3,708,019	+		GFF3665	0.23	+0.9
3,708,019	+		GFF3665	0.23	-1.4
3,708,027	-		GFF3665	0.24	+0.5
3,708,027	-		GFF3665	0.24	+0.2
3,708,027	-		GFF3665	0.24	-0.5
3,708,027	-		GFF3665	0.24	+0.1
3,708,027	-		GFF3665	0.24	+0.1
3,708,027	-		GFF3665	0.24	+0.2
3,708,027	-		GFF3665	0.24	-0.4
3,708,027	-		GFF3665	0.24	-0.3
3,708,027	-		GFF3665	0.24	-0.3
3,708,053	+		GFF3665	0.26	-1.2
3,708,053	+		GFF3665	0.26	+0.9
3,708,061	-		GFF3665	0.27	+0.4
3,708,061	-		GFF3665	0.27	-0.1
3,708,061	-		GFF3665	0.27	-0.1
3,708,066	-		GFF3665	0.27	-1.1
3,708,066	-		GFF3665	0.27	+0.9
3,708,067	+		GFF3665	0.28	-0.4
3,708,091	+		GFF3665	0.30	-0.5
3,708,091	+		GFF3665	0.30	+2.2
3,708,091	+		GFF3665	0.30	+1.0
3,708,091	+		GFF3665	0.30	+0.4
3,708,109	+		GFF3665	0.31	+0.7
3,708,137	+		GFF3665	0.34	-0.8
3,708,266	-		GFF3665	0.46	-1.1
3,708,276	-		GFF3665	0.47	-1.9
3,708,281	-		GFF3665	0.48	-0.6
3,708,283	+		GFF3665	0.48	-1.0
3,708,285	+		GFF3665	0.48	-1.0
3,708,291	-		GFF3665	0.48	-0.2
3,708,291	-		GFF3665	0.48	+0.1
3,708,335	+		GFF3665	0.53	-0.1
3,708,336	+		GFF3665	0.53	-0.5
3,708,356	-		GFF3665	0.55	-1.7
3,708,360	-		GFF3665	0.55	-1.3
3,708,373	+		GFF3665	0.56	+0.4
3,708,377	+		GFF3665	0.56	+0.4
3,708,383	-		GFF3665	0.57	-0.6
3,708,385	-		GFF3665	0.57	+0.6
3,708,388	+		GFF3665	0.58	+0.3
3,708,394	+		GFF3665	0.58	-0.2
3,708,394	+		GFF3665	0.58	-1.0
3,708,396	-		GFF3665	0.58	-0.0
3,708,421	-		GFF3665	0.61	-0.7
3,708,426	-		GFF3665	0.61	+0.6
3,708,435	+		GFF3665	0.62	+1.5
3,708,440	+		GFF3665	0.62	+0.1
3,708,450	+		GFF3665	0.63	-0.5
3,708,453	-		GFF3665	0.64	-0.5
3,708,465	-		GFF3665	0.65	-1.4
3,708,479	-		GFF3665	0.66	-0.2
3,708,497	+		GFF3665	0.68	-0.9
3,708,518	-		GFF3665	0.70	-0.8
3,708,524	-		GFF3665	0.70	-0.6
3,708,524	-		GFF3665	0.70	-0.4
3,708,557	+		GFF3665	0.73	+0.2
3,708,565	-		GFF3665	0.74	-0.3
3,708,570	-		GFF3665	0.75	+1.0
3,708,580	-		GFF3665	0.75	+1.5
3,708,589	-		GFF3665	0.76	+0.4
3,708,604	+		GFF3665	0.78	+0.4
3,708,611	+		GFF3665	0.78	-0.4
3,708,617	-		GFF3665	0.79	-0.5
3,708,621	+		GFF3665	0.79	+0.7
3,708,631	+		GFF3665	0.80	+0.5
3,708,631	+		GFF3665	0.80	-0.5
3,708,631	+		GFF3665	0.80	-0.6
3,708,631	+		GFF3665	0.80	-0.1
3,708,634	-		GFF3665	0.80	-0.5
3,708,634	-		GFF3665	0.80	+0.1
3,708,634	-		GFF3665	0.80	-0.5
3,708,634	-		GFF3665	0.80	+0.3
3,708,634	-		GFF3665	0.80	-0.5
3,708,636	+		GFF3665	0.81	+0.2
3,708,636	+		GFF3665	0.81	+1.6
3,708,639	-		GFF3665	0.81	+0.2
3,708,639	-		GFF3665	0.81	-0.8
3,708,639	-		GFF3665	0.81	+0.5
3,708,644	+		GFF3665	0.81	+0.4
3,708,644	-		GFF3665	0.81	-0.6
3,708,649	-		GFF3665	0.82	+0.2
3,708,649	-		GFF3665	0.82	-2.7
3,708,652	-		GFF3665	0.82	-1.0
3,708,654	-		GFF3665	0.82	-1.2
3,708,657	+		GFF3665	0.83	+0.0
3,708,658	-		GFF3665	0.83	-0.7
3,708,700	-		GFF3665	0.87	-0.8