Strain Fitness in Sphingobium sp. HT1-2 around GFF3661

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,703,418	+		GFF3659	0.65	-0.0
3,703,470	+		GFF3659	0.70	-1.2
3,703,478	-		GFF3659	0.70	-1.3
3,703,510	+		GFF3659	0.73	-0.6
3,703,511	+		GFF3659	0.73	+0.1
3,703,518	-		GFF3659	0.74	+1.2
3,703,518	-		GFF3659	0.74	-0.9
3,703,519	-		GFF3659	0.74	+0.0
3,703,601	+		GFF3659	0.81	-0.0
3,703,615	-		GFF3659	0.82	-0.1
3,703,638	-		GFF3659	0.84	+0.6
3,703,638	-		GFF3659	0.84	-1.1
3,703,684	-		GFF3659	0.88	+1.3
3,703,719	-				-0.9
3,703,719	-				-1.1
3,703,719	-				+0.5
3,703,719	-				+1.2
3,703,720	+				-0.3
3,703,720	+				-0.8
3,703,720	+				+0.9
3,703,720	+				+0.7
3,703,720	+				+0.0
3,703,720	+				+1.5
3,703,720	+				-1.3
3,703,720	+				-0.2
3,703,720	+				-1.5
3,703,720	+				-1.4
3,703,720	+				-1.2
3,703,720	+				+0.8
3,703,720	+				-0.8
3,703,720	+				+1.2
3,703,720	+				+0.4
3,703,720	+				-2.2
3,703,728	-				-0.3
3,703,728	-				-0.6
3,703,728	-				-0.8
3,703,728	-				-0.4
3,703,728	-				-0.1
3,703,728	-				-0.7
3,703,728	-				-0.0
3,703,728	-				-2.4
3,703,728	-				+0.2
3,703,728	-				-0.9
3,703,732	+				-0.3
3,703,732	+				-0.0
3,703,732	+				-0.4
3,703,737	+				-1.3
3,703,740	-				-0.5
3,703,745	-				+0.1
3,703,745	-				-0.6
3,703,769	+				+0.2
3,703,784	+				-2.6
3,703,784	+				+0.4
3,703,784	+				-1.7
3,703,789	+				-2.5
3,703,803	+				-0.3
3,703,803	+				-1.8
3,703,803	+				-0.2
3,703,803	+				+0.7
3,703,803	+				-0.2
3,703,803	+				+0.7
3,703,803	+				-0.2
3,703,811	-				+0.1
3,703,811	-				-1.2
3,703,811	-				-0.8
3,703,811	-				-1.2
3,703,811	-				+0.7
3,703,811	-				+0.1
3,703,817	-				-0.0
3,703,837	-				+0.2
3,703,849	+				-0.0
3,703,857	-				-0.8
3,703,864	+				-0.5
3,703,872	+				-2.7
3,704,332	+				-0.5
3,704,332	+				-0.4
3,704,332	+				-1.0
3,704,332	+				-1.1
3,704,332	+				-0.2
3,704,332	+				-0.1
3,704,333	-				-1.6
3,704,340	-				+0.2
3,704,340	-				-0.3
3,704,340	-				+1.1
3,704,352	+				+1.1
3,704,387	-				+0.4
3,704,430	+				+1.0
3,704,430	+				+0.0
3,704,435	-				-0.6
3,704,445	-				-2.2
3,704,452	-				+0.2
3,704,466	+				+0.7
3,704,476	+				+0.3
3,704,476	+				-0.2
3,704,476	+				-1.8
3,704,476	+				-2.0
3,704,476	+				+0.1
3,704,476	+				+0.9
3,704,476	+				-0.5
3,704,476	+				+0.0
3,704,476	+				+0.5
3,704,476	+				+0.1
3,704,476	+				+0.4
3,704,481	+				-1.9
3,704,484	-				-1.1
3,704,484	-				+0.2
3,704,484	-				-0.2
3,704,484	-				-0.3
3,704,484	-				+0.2
3,704,484	-				+0.5
3,704,484	-				-0.8
3,704,484	-				+0.5
3,704,484	-				-0.5
3,704,502	-		GFF3661	0.10	-0.1
3,704,517	-		GFF3661	0.12	+0.1
3,704,540	+		GFF3661	0.14	-1.6
3,704,540	+		GFF3661	0.14	-1.9
3,704,545	+		GFF3661	0.14	-1.5
3,704,548	-		GFF3661	0.14	-1.3
3,704,548	-		GFF3661	0.14	+0.4
3,704,548	-		GFF3661	0.14	+0.4
3,704,599	+		GFF3661	0.19	+0.6
3,704,612	+		GFF3661	0.20	-0.1
3,704,621	-		GFF3661	0.21	-2.3
3,704,623	+		GFF3661	0.21	-1.3
3,704,624	+		GFF3661	0.22	-1.4
3,704,631	-		GFF3661	0.22	-1.2
3,704,631	-		GFF3661	0.22	-1.3
3,704,661	+		GFF3661	0.25	+0.3
3,704,661	+		GFF3661	0.25	+1.0
3,704,661	+		GFF3661	0.25	+0.4
3,704,669	-		GFF3661	0.26	-0.5
3,704,683	+		GFF3661	0.27	+0.5
3,704,683	+		GFF3661	0.27	+1.4
3,704,683	+		GFF3661	0.27	+0.3
3,704,683	+		GFF3661	0.27	-1.9
3,704,686	-		GFF3661	0.27	+1.1
3,704,686	-		GFF3661	0.27	-1.5
3,704,691	-		GFF3661	0.28	-1.2
3,704,691	-		GFF3661	0.28	+0.7
3,704,705	+		GFF3661	0.29	+0.4
3,704,707	+		GFF3661	0.29	-0.0
3,704,715	+		GFF3661	0.30	+0.1
3,704,715	+		GFF3661	0.30	-2.0
3,704,715	+		GFF3661	0.30	+0.5
3,704,720	+		GFF3661	0.30	+1.2
3,704,721	-		GFF3661	0.31	-1.2
3,704,738	+		GFF3661	0.32	-0.2
3,704,740	+		GFF3661	0.32	-0.0
3,704,745	+		GFF3661	0.33	-0.5
3,704,747	+		GFF3661	0.33	-1.6
3,704,748	-		GFF3661	0.33	+0.1
3,704,748	-		GFF3661	0.33	+0.2
3,704,748	-		GFF3661	0.33	-0.7
3,704,748	-		GFF3661	0.33	-1.5
3,704,748	-		GFF3661	0.33	+1.0
3,704,748	-		GFF3661	0.33	+0.8
3,704,748	-		GFF3661	0.33	-0.6
3,704,753	-		GFF3661	0.34	-1.1
3,704,755	-		GFF3661	0.34	-2.3
3,704,776	+		GFF3661	0.36	-0.3
3,704,781	+		GFF3661	0.36	-0.3
3,704,784	-		GFF3661	0.36	-0.3
3,704,784	-		GFF3661	0.36	-2.2
3,704,784	-		GFF3661	0.36	-0.2
3,704,789	-		GFF3661	0.37	-0.0
3,704,804	+		GFF3661	0.38	-1.0
3,704,806	+		GFF3661	0.38	+0.5
3,704,808	+		GFF3661	0.39	+0.4
3,704,811	+		GFF3661	0.39	-1.1
3,704,814	-		GFF3661	0.39	-0.2
3,704,819	-		GFF3661	0.40	-0.5
3,704,819	-		GFF3661	0.40	+0.1
3,704,852	+		GFF3661	0.43	+0.5
3,704,852	+		GFF3661	0.43	+0.3
3,704,854	+		GFF3661	0.43	-1.1
3,704,854	+		GFF3661	0.43	-1.1
3,704,854	+		GFF3661	0.43	-1.8
3,704,860	-		GFF3661	0.43	+1.9
3,704,860	-		GFF3661	0.43	+0.3
3,704,860	-		GFF3661	0.43	-0.3
3,704,862	-		GFF3661	0.44	-0.0
3,704,872	-		GFF3661	0.45	+0.3
3,704,910	+		GFF3661	0.48	-0.3
3,704,913	-		GFF3661	0.48	-0.0
3,704,923	+		GFF3661	0.49	-2.0
3,704,937	+		GFF3661	0.51	-1.6
3,704,940	-		GFF3661	0.51	-0.0
3,704,941	-		GFF3661	0.51	-0.1
3,704,945	-		GFF3661	0.51	-0.5
3,704,971	-		GFF3661	0.54	-0.2
3,704,984	+		GFF3661	0.55	+0.0
3,704,984	+		GFF3661	0.55	+0.1
3,704,984	-		GFF3661	0.55	-0.3
3,704,989	+		GFF3661	0.55	-0.6
3,704,992	-		GFF3661	0.56	-0.4
3,704,992	-		GFF3661	0.56	-3.0
3,704,997	-		GFF3661	0.56	+0.9
3,704,997	-		GFF3661	0.56	+0.3
3,704,998	+		GFF3661	0.56	-0.5
3,704,998	+		GFF3661	0.56	-1.6
3,704,998	+		GFF3661	0.56	+0.4
3,705,006	-		GFF3661	0.57	+0.1
3,705,006	-		GFF3661	0.57	+0.5
3,705,006	-		GFF3661	0.57	-0.2
3,705,011	-		GFF3661	0.57	-1.9
3,705,014	+		GFF3661	0.58	+0.4
3,705,014	+		GFF3661	0.58	-1.2
3,705,014	+		GFF3661	0.58	+1.7
3,705,014	+		GFF3661	0.58	+1.1
3,705,022	-		GFF3661	0.58	-2.4
3,705,022	-		GFF3661	0.58	+0.5
3,705,022	-		GFF3661	0.58	-0.5
3,705,035	+		GFF3661	0.60	+0.0
3,705,036	-		GFF3661	0.60	+0.4
3,705,158	+		GFF3661	0.71	-1.3
3,705,172	-		GFF3661	0.72	-0.3
3,705,187	-		GFF3661	0.74	-2.3
3,705,194	+		GFF3661	0.74	+0.7
3,705,194	+		GFF3661	0.74	-1.5
3,705,194	+		GFF3661	0.74	-1.6
3,705,194	+		GFF3661	0.74	-0.2
3,705,194	+		GFF3661	0.74	-0.1
3,705,194	+		GFF3661	0.74	+0.4
3,705,194	+		GFF3661	0.74	+0.2
3,705,194	+		GFF3661	0.74	+0.8
3,705,194	+		GFF3661	0.74	-0.5
3,705,194	+		GFF3661	0.74	+0.9
3,705,202	-		GFF3661	0.75	-0.6
3,705,202	-		GFF3661	0.75	+0.7
3,705,202	-		GFF3661	0.75	+0.1
3,705,202	-		GFF3661	0.75	+0.0
3,705,209	+		GFF3661	0.76	-1.3
3,705,212	-		GFF3661	0.76	-1.7
3,705,222	-		GFF3661	0.77	+0.7
3,705,249	+		GFF3661	0.80	-0.0
3,705,251	+		GFF3661	0.80	+0.3
3,705,256	-		GFF3661	0.80	-1.6
3,705,266	+		GFF3661	0.81	-0.0
3,705,271	+		GFF3661	0.82	+0.2
3,705,279	+		GFF3661	0.82	+0.1
3,705,279	-		GFF3661	0.82	-0.4
3,705,286	-		GFF3661	0.83	-0.1
3,705,288	-		GFF3661	0.83	-1.5
3,705,305	+		GFF3661	0.85	-0.2
3,705,329	+		GFF3661	0.87	+0.1
3,705,334	+		GFF3661	0.87	-0.7
3,705,334	+		GFF3661	0.87	-1.2
3,705,334	+		GFF3661	0.87	-0.4
3,705,334	+		GFF3661	0.87	-0.7
3,705,334	+		GFF3661	0.87	-0.2
3,705,334	+		GFF3661	0.87	-0.1
3,705,334	+		GFF3661	0.87	+0.7
3,705,334	+		GFF3661	0.87	-2.0
3,705,334	+		GFF3661	0.87	+0.5
3,705,337	-		GFF3661	0.88	-0.8
3,705,342	-		GFF3661	0.88	-0.1
3,705,342	-		GFF3661	0.88	-0.2
3,705,342	-		GFF3661	0.88	+0.7
3,705,342	-		GFF3661	0.88	-0.2
3,705,342	-		GFF3661	0.88	+0.5
3,705,343	+		GFF3661	0.88	-0.2
3,705,351	-		GFF3661	0.89	-2.7
3,705,356	-		GFF3661	0.90	+0.1
3,705,434	+				-0.5
3,705,437	+				-2.8
3,705,437	+				-0.2
3,705,437	+				-1.2
3,705,437	+				-1.4
3,705,437	+				+0.1
3,705,438	+				-1.2
3,705,439	+				+1.0
3,705,440	-				-1.4
3,705,445	-				-1.6
3,705,445	-				+0.3
3,705,445	-				-0.1
3,705,455	-				-0.8
3,705,458	+				-0.6
3,705,458	+				-1.6
3,705,466	-				-0.6
3,705,475	+				+1.9
3,705,476	+				+0.6
3,705,476	-				+0.1
3,705,484	-				-0.4
3,705,484	-				-0.4
3,705,484	-				-2.0
3,705,493	-				+0.1
3,705,508	+				+0.2
3,705,515	-				-0.4
3,705,580	+		GFF3662	0.17	+0.7
3,705,586	+		GFF3662	0.17	+0.7
3,705,594	-		GFF3662	0.19	+0.5
3,705,595	+		GFF3662	0.19	+0.4
3,705,595	+		GFF3662	0.19	-0.1
3,705,595	+		GFF3662	0.19	+0.4
3,705,597	+		GFF3662	0.19	-0.5
3,705,603	-		GFF3662	0.20	+0.8
3,705,603	-		GFF3662	0.20	+0.1
3,705,627	-		GFF3662	0.23	-0.4
3,705,634	+		GFF3662	0.24	+0.8
3,705,642	-		GFF3662	0.26	-1.0
3,705,642	-		GFF3662	0.26	+0.0
3,705,644	+		GFF3662	0.26	-0.5
3,705,644	+		GFF3662	0.26	-0.6
3,705,644	+		GFF3662	0.26	-1.2
3,705,644	+		GFF3662	0.26	-0.2
3,705,644	+		GFF3662	0.26	+0.4
3,705,644	+		GFF3662	0.26	+0.2
3,705,644	+		GFF3662	0.26	-1.4
3,705,644	+		GFF3662	0.26	-0.2
3,705,644	+		GFF3662	0.26	-0.9
3,705,644	+		GFF3662	0.26	-1.0
3,705,644	+		GFF3662	0.26	-0.2
3,705,644	+		GFF3662	0.26	-0.6
3,705,644	+		GFF3662	0.26	-1.6
3,705,644	+		GFF3662	0.26	-0.5
3,705,652	-		GFF3662	0.27	+0.2
3,705,652	-		GFF3662	0.27	+0.9
3,705,652	-		GFF3662	0.27	+0.6
3,705,652	-		GFF3662	0.27	-2.1
3,705,652	-		GFF3662	0.27	-0.4
3,705,652	-		GFF3662	0.27	-0.6
3,705,652	-		GFF3662	0.27	-0.7
3,705,652	-		GFF3662	0.27	+0.3
3,705,652	-		GFF3662	0.27	+0.4
3,705,652	-		GFF3662	0.27	+1.8
3,705,652	-		GFF3662	0.27	-0.5
3,705,652	-		GFF3662	0.27	-0.6
3,705,652	-		GFF3662	0.27	+0.2
3,705,652	-		GFF3662	0.27	-0.2
3,705,652	-		GFF3662	0.27	-0.1
3,705,652	-		GFF3662	0.27	-0.9
3,705,655	+		GFF3662	0.27	-0.4
3,705,655	+		GFF3662	0.27	+0.4
3,705,662	+		GFF3662	0.28	-1.5
3,705,663	-		GFF3662	0.29	-1.1
3,705,676	+		GFF3662	0.30	-0.2
3,705,722	+		GFF3662	0.37	+0.0
3,705,723	+		GFF3662	0.37	-1.0
3,705,730	+		GFF3662	0.38	+0.5
3,705,731	-		GFF3662	0.38	-2.4
3,705,735	+		GFF3662	0.39	+0.5
3,705,736	+		GFF3662	0.39	-0.2
3,705,738	-		GFF3662	0.39	+1.5
3,705,738	-		GFF3662	0.39	+1.1
3,705,738	-		GFF3662	0.39	-2.1
3,705,738	-		GFF3662	0.39	-0.6
3,705,746	+		GFF3662	0.41	+0.6
3,705,749	-		GFF3662	0.41	-0.4
3,705,749	-		GFF3662	0.41	+0.0
3,705,749	-		GFF3662	0.41	+0.6
3,705,749	-		GFF3662	0.41	-0.6
3,705,749	-		GFF3662	0.41	+0.1
3,705,759	-		GFF3662	0.42	-0.4
3,705,778	+		GFF3662	0.45	+0.1
3,705,778	+		GFF3662	0.45	-1.7
3,705,778	+		GFF3662	0.45	-1.9
3,705,778	+		GFF3662	0.45	+0.8
3,705,780	+		GFF3662	0.45	+0.7
3,705,783	-		GFF3662	0.46	-1.9
3,705,786	-		GFF3662	0.46	-0.2
3,705,786	-		GFF3662	0.46	-0.7
3,705,786	-		GFF3662	0.46	+0.2
3,705,786	-		GFF3662	0.46	+0.3
3,705,786	-		GFF3662	0.46	+0.4
3,705,786	-		GFF3662	0.46	-0.1
3,705,786	-		GFF3662	0.46	+0.7
3,705,786	-		GFF3662	0.46	+0.7
3,705,788	+		GFF3662	0.47	+0.3
3,705,791	-		GFF3662	0.47	+1.0
3,705,791	-		GFF3662	0.47	-0.5
3,705,794	-		GFF3662	0.47	-0.7
3,705,795	+		GFF3662	0.48	-0.9
3,705,820	-		GFF3662	0.51	-1.8
3,705,823	-		GFF3662	0.52	+0.8
3,705,823	-		GFF3662	0.52	+1.0
3,705,823	-		GFF3662	0.52	-0.5
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