Strain Fitness in Sphingobium sp. HT1-2 around GFF3635

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,682,566	+				+0.6
3,682,568	-				+0.8
3,682,595	+				-1.9
3,682,595	+				-0.7
3,682,603	-				-0.6
3,682,603	-				-0.4
3,682,603	-				-0.1
3,682,603	-				-0.1
3,682,603	-				-1.1
3,682,603	-				+0.2
3,682,639	-				+0.2
3,682,639	-				-0.3
3,682,649	-				-0.3
3,682,659	-				+0.2
3,682,660	+				+0.5
3,682,661	+				-0.5
3,682,661	+				-0.3
3,682,661	+				+1.0
3,682,661	+				+0.3
3,682,661	+				+0.2
3,682,664	-				-0.4
3,682,669	-				+0.7
3,682,669	-				+0.4
3,682,671	+				-1.4
3,682,697	+				-1.1
3,682,698	-				+0.7
3,682,705	-		GFF3634	0.11	-1.6
3,682,731	-		GFF3634	0.13	-0.2
3,682,735	+		GFF3634	0.14	-0.1
3,682,735	+		GFF3634	0.14	+0.5
3,682,735	+		GFF3634	0.14	-0.0
3,682,741	+		GFF3634	0.14	+0.6
3,682,741	+		GFF3634	0.14	-0.5
3,682,743	-		GFF3634	0.15	-2.6
3,682,747	+		GFF3634	0.15	-2.2
3,682,749	-		GFF3634	0.15	-2.7
3,682,752	+		GFF3634	0.16	+0.8
3,682,752	+		GFF3634	0.16	-0.8
3,682,752	+		GFF3634	0.16	-1.0
3,682,752	+		GFF3634	0.16	-0.6
3,682,752	+		GFF3634	0.16	+0.8
3,682,752	+		GFF3634	0.16	+0.7
3,682,752	+		GFF3634	0.16	-0.6
3,682,752	+		GFF3634	0.16	-0.8
3,682,752	+		GFF3634	0.16	-0.0
3,682,752	+		GFF3634	0.16	-0.5
3,682,752	+		GFF3634	0.16	-0.8
3,682,752	+		GFF3634	0.16	+0.4
3,682,752	+		GFF3634	0.16	+0.4
3,682,752	+		GFF3634	0.16	+0.2
3,682,752	+		GFF3634	0.16	+0.2
3,682,752	+		GFF3634	0.16	-0.1
3,682,752	+		GFF3634	0.16	-0.5
3,682,752	+		GFF3634	0.16	+0.8
3,682,752	+		GFF3634	0.16	-0.3
3,682,752	+		GFF3634	0.16	-0.9
3,682,752	+		GFF3634	0.16	-1.8
3,682,753	-		GFF3634	0.16	-0.2
3,682,759	+		GFF3634	0.16	-0.2
3,682,760	-		GFF3634	0.17	+0.2
3,682,760	-		GFF3634	0.17	-0.7
3,682,760	-		GFF3634	0.17	+0.4
3,682,760	-		GFF3634	0.17	-0.1
3,682,760	-		GFF3634	0.17	-0.4
3,682,760	-		GFF3634	0.17	-1.3
3,682,760	-		GFF3634	0.17	+0.2
3,682,760	-		GFF3634	0.17	-0.3
3,682,760	-		GFF3634	0.17	-0.3
3,682,760	-		GFF3634	0.17	+0.6
3,682,760	-		GFF3634	0.17	-1.3
3,682,760	-		GFF3634	0.17	+0.5
3,682,760	-		GFF3634	0.17	-0.9
3,682,762	-		GFF3634	0.17	-0.2
3,682,762	-		GFF3634	0.17	-0.6
3,682,766	+		GFF3634	0.17	-0.8
3,682,767	+		GFF3634	0.17	-1.6
3,682,767	+		GFF3634	0.17	-0.6
3,682,767	-		GFF3634	0.17	-0.5
3,682,767	-		GFF3634	0.17	-0.9
3,682,780	-		GFF3634	0.19	+0.2
3,682,788	-		GFF3634	0.19	+0.1
3,682,788	-		GFF3634	0.19	-1.3
3,682,788	-		GFF3634	0.19	+0.8
3,682,793	-		GFF3634	0.20	-0.9
3,682,801	-		GFF3634	0.21	+0.9
3,682,833	+		GFF3634	0.24	-0.4
3,682,841	-		GFF3634	0.25	+0.5
3,682,843	-		GFF3634	0.25	+0.2
3,682,875	+		GFF3634	0.29	+0.1
3,682,877	+		GFF3634	0.29	-0.7
3,682,880	+		GFF3634	0.29	-0.5
3,682,880	+		GFF3634	0.29	-2.1
3,682,883	-		GFF3634	0.30	-0.2
3,682,888	-		GFF3634	0.30	-0.2
3,682,888	-		GFF3634	0.30	+0.1
3,682,930	+		GFF3634	0.34	+0.5
3,682,937	+		GFF3634	0.35	-1.6
3,682,937	+		GFF3634	0.35	-1.6
3,682,942	+		GFF3634	0.36	+0.7
3,682,942	+		GFF3634	0.36	-2.2
3,682,945	-		GFF3634	0.36	-0.1
3,682,945	-		GFF3634	0.36	-0.9
3,682,945	-		GFF3634	0.36	-1.8
3,682,947	+		GFF3634	0.36	-0.5
3,682,950	-		GFF3634	0.37	-0.4
3,682,950	-		GFF3634	0.37	-0.6
3,682,966	+		GFF3634	0.38	-2.5
3,682,966	+		GFF3634	0.38	-0.6
3,682,989	-		GFF3634	0.41	-0.6
3,683,001	+		GFF3634	0.42	+1.2
3,683,009	-		GFF3634	0.43	+1.9
3,683,025	+		GFF3634	0.45	+0.3
3,683,030	+		GFF3634	0.45	-1.0
3,683,038	-		GFF3634	0.46	+0.7
3,683,055	+		GFF3634	0.48	+0.7
3,683,063	-		GFF3634	0.49	+1.7
3,683,063	-		GFF3634	0.49	-0.3
3,683,074	+		GFF3634	0.50	+0.1
3,683,074	+		GFF3634	0.50	+0.4
3,683,074	+		GFF3634	0.50	-1.6
3,683,074	+		GFF3634	0.50	+0.6
3,683,082	-		GFF3634	0.51	-0.3
3,683,082	-		GFF3634	0.51	-0.9
3,683,082	-		GFF3634	0.51	-1.2
3,683,088	+		GFF3634	0.51	-1.5
3,683,103	-		GFF3634	0.53	-2.5
3,683,115	+		GFF3634	0.54	-0.6
3,683,133	+		GFF3634	0.56	+0.5
3,683,153	-		GFF3634	0.58	-0.8
3,683,153	-		GFF3634	0.58	+1.8
3,683,158	+		GFF3634	0.59	-0.8
3,683,165	+		GFF3634	0.59	-1.7
3,683,171	-		GFF3634	0.60	-0.6
3,683,173	-		GFF3634	0.60	-2.1
3,683,188	+		GFF3634	0.62	-0.3
3,683,194	-		GFF3634	0.62	-0.8
3,683,215	+		GFF3634	0.65	-0.2
3,683,224	-		GFF3634	0.66	-0.2
3,683,251	+		GFF3634	0.68	+0.0
3,683,277	-		GFF3634	0.71	-0.4
3,683,282	-		GFF3634	0.72	-0.1
3,683,334	+		GFF3634	0.77	-1.7
3,683,334	+		GFF3634	0.77	-0.5
3,683,341	-		GFF3634	0.78	-0.0
3,683,342	-		GFF3634	0.78	-0.5
3,683,342	-		GFF3634	0.78	+0.7
3,683,342	-		GFF3634	0.78	+1.1
3,683,342	-		GFF3634	0.78	+0.4
3,683,342	-		GFF3634	0.78	-0.1
3,683,342	-		GFF3634	0.78	-2.8
3,683,342	-		GFF3634	0.78	+1.1
3,683,342	-		GFF3634	0.78	-0.2
3,683,342	-		GFF3634	0.78	+0.6
3,683,363	+		GFF3634	0.80	-0.2
3,683,365	+		GFF3634	0.81	-0.4
3,683,365	+		GFF3634	0.81	+0.5
3,683,371	-		GFF3634	0.81	-2.3
3,683,373	-		GFF3634	0.81	+0.7
3,683,378	-		GFF3634	0.82	-0.2
3,683,378	-		GFF3634	0.82	-1.8
3,683,380	+		GFF3634	0.82	-0.9
3,683,380	+		GFF3634	0.82	-0.3
3,683,380	+		GFF3634	0.82	-0.6
3,683,380	+		GFF3634	0.82	-2.6
3,683,380	+		GFF3634	0.82	-1.6
3,683,388	-		GFF3634	0.83	+1.1
3,683,388	-		GFF3634	0.83	-0.9
3,683,388	-		GFF3634	0.83	+0.9
3,683,439	-		GFF3634	0.88	+0.1
3,683,439	-		GFF3634	0.88	-0.3
3,683,441	+		GFF3634	0.89	-0.3
3,683,441	+		GFF3634	0.89	-0.7
3,683,473	+				+0.5
3,683,473	+				+1.3
3,683,481	-				+0.3
3,683,481	-				+1.1
3,683,494	+				+0.4
3,683,517	+				-0.1
3,683,559	-				+0.0
3,683,562	-				+0.1
3,683,593	+				+1.2
3,683,593	+				-0.8
3,683,593	+				+0.6
3,683,596	-				+0.5
3,683,601	-				+0.2
3,683,606	-				+0.1
3,683,606	-				+1.0
3,683,606	-				-0.8
3,683,612	+				+0.5
3,683,617	+				+1.0
3,683,617	+				+0.2
3,683,617	+				-0.9
3,683,617	+				-0.3
3,683,617	+				-1.3
3,683,617	+				-0.2
3,683,617	+				-1.1
3,683,622	+				+0.4
3,683,622	+				-0.6
3,683,622	+				+1.1
3,683,622	+				-0.2
3,683,622	+				-1.0
3,683,622	+				-0.5
3,683,625	-				-1.2
3,683,625	-				-0.8
3,683,625	-				-0.3
3,683,625	-				+0.3
3,683,625	-				+0.1
3,683,625	-				+0.1
3,683,625	-				+0.3
3,683,630	-				+0.2
3,683,630	-				-2.1
3,683,630	-				-0.5
3,683,630	-				-0.5
3,683,630	-				-0.1
3,683,648	+				+1.7
3,683,682	+		GFF3635	0.11	-0.4
3,683,687	+		GFF3635	0.11	-0.7
3,683,687	+		GFF3635	0.11	-0.8
3,683,687	+		GFF3635	0.11	-0.2
3,683,687	+		GFF3635	0.11	-0.4
3,683,687	+		GFF3635	0.11	-0.5
3,683,695	-		GFF3635	0.12	+0.6
3,683,695	-		GFF3635	0.12	+0.1
3,683,695	-		GFF3635	0.12	-1.7
3,683,695	-		GFF3635	0.12	+0.3
3,683,695	-		GFF3635	0.12	+0.4
3,683,695	-		GFF3635	0.12	-0.5
3,683,697	+		GFF3635	0.12	-1.6
3,683,697	+		GFF3635	0.12	+0.1
3,683,705	-		GFF3635	0.13	-0.3
3,683,705	-		GFF3635	0.13	+0.7
3,683,717	+		GFF3635	0.14	-1.2
3,683,748	+		GFF3635	0.17	+0.8
3,683,756	-		GFF3635	0.17	+0.5
3,683,776	+		GFF3635	0.19	+0.7
3,683,784	-		GFF3635	0.20	+0.9
3,683,826	-		GFF3635	0.23	+0.6
3,683,830	+		GFF3635	0.24	+0.1
3,683,838	-		GFF3635	0.24	-1.2
3,683,845	+		GFF3635	0.25	-1.4
3,683,853	-		GFF3635	0.26	+0.1
3,683,871	+		GFF3635	0.27	-0.1
3,683,872	-		GFF3635	0.27	+1.0
3,683,889	-		GFF3635	0.29	-0.7
3,683,905	-		GFF3635	0.30	-0.5
3,683,920	-		GFF3635	0.31	+0.5
3,683,920	-		GFF3635	0.31	+0.3
3,683,946	-		GFF3635	0.33	+1.1
3,683,973	-		GFF3635	0.36	-0.6
3,683,983	-		GFF3635	0.37	-0.5
3,683,988	+		GFF3635	0.37	+0.2
3,683,989	+		GFF3635	0.37	+0.1
3,684,001	-		GFF3635	0.38	-1.7
3,684,010	+		GFF3635	0.39	+0.4
3,684,010	+		GFF3635	0.39	-0.4
3,684,077	+		GFF3635	0.45	-1.0
3,684,083	+		GFF3635	0.45	-0.8
3,684,091	-		GFF3635	0.46	+0.1
3,684,101	+		GFF3635	0.47	-0.8
3,684,110	-		GFF3635	0.47	-0.6
3,684,112	+		GFF3635	0.48	-0.6
3,684,126	+		GFF3635	0.49	-0.8
3,684,129	-		GFF3635	0.49	-0.8
3,684,134	+		GFF3635	0.49	-0.2
3,684,134	+		GFF3635	0.49	-0.3
3,684,135	-		GFF3635	0.49	+0.2
3,684,135	-		GFF3635	0.49	+1.2
3,684,142	-		GFF3635	0.50	+0.1
3,684,142	-		GFF3635	0.50	-1.0
3,684,142	-		GFF3635	0.50	+0.7
3,684,142	-		GFF3635	0.50	+0.1
3,684,190	+		GFF3635	0.54	+0.1
3,684,190	+		GFF3635	0.54	+0.9
3,684,198	-		GFF3635	0.55	-1.8
3,684,202	+		GFF3635	0.55	-0.2
3,684,203	+		GFF3635	0.55	+0.4
3,684,211	-		GFF3635	0.56	-1.2
3,684,213	+		GFF3635	0.56	+0.9
3,684,220	-		GFF3635	0.57	+0.1
3,684,220	-		GFF3635	0.57	-0.2
3,684,227	+		GFF3635	0.57	+0.2
3,684,235	+		GFF3635	0.58	-0.8
3,684,235	+		GFF3635	0.58	-0.3
3,684,243	-		GFF3635	0.59	+0.6
3,684,264	+		GFF3635	0.60	-1.5
3,684,264	+		GFF3635	0.60	-0.1
3,684,264	+		GFF3635	0.60	+0.8
3,684,264	+		GFF3635	0.60	-0.9
3,684,264	+		GFF3635	0.60	+0.4
3,684,264	+		GFF3635	0.60	-2.0
3,684,264	+		GFF3635	0.60	+0.4
3,684,264	+		GFF3635	0.60	-0.3
3,684,267	-		GFF3635	0.61	-1.6
3,684,272	-		GFF3635	0.61	-0.1
3,684,272	-		GFF3635	0.61	+1.1
3,684,272	-		GFF3635	0.61	-0.3
3,684,272	-		GFF3635	0.61	+1.6
3,684,272	-		GFF3635	0.61	+0.9
3,684,272	-		GFF3635	0.61	+0.8
3,684,272	-		GFF3635	0.61	-0.3
3,684,272	-		GFF3635	0.61	+0.0
3,684,272	-		GFF3635	0.61	+0.7
3,684,313	+		GFF3635	0.65	-0.2
3,684,313	+		GFF3635	0.65	-0.3
3,684,314	-		GFF3635	0.65	+0.3
3,684,321	-		GFF3635	0.65	-0.8
3,684,321	-		GFF3635	0.65	-0.6
3,684,321	-		GFF3635	0.65	-1.6
3,684,323	+		GFF3635	0.65	-0.9
3,684,331	-		GFF3635	0.66	-0.5
3,684,331	-		GFF3635	0.66	-0.9
3,684,343	+		GFF3635	0.67	+1.2
3,684,361	-		GFF3635	0.69	+0.4
3,684,388	+		GFF3635	0.71	-0.2
3,684,393	-		GFF3635	0.71	+0.1
3,684,418	+		GFF3635	0.74	+0.7
3,684,420	+		GFF3635	0.74	+0.1
3,684,420	+		GFF3635	0.74	-1.2
3,684,445	+		GFF3635	0.76	-1.5
3,684,445	+		GFF3635	0.76	+0.4
3,684,453	-		GFF3635	0.77	-0.8
3,684,453	-		GFF3635	0.77	-0.0
3,684,453	-		GFF3635	0.77	-0.2
3,684,453	-		GFF3635	0.77	-1.8
3,684,455	+		GFF3635	0.77	-0.2
3,684,455	+		GFF3635	0.77	+0.4
3,684,455	+		GFF3635	0.77	-0.1
3,684,463	-		GFF3635	0.77	+0.3
3,684,463	-		GFF3635	0.77	-0.4
3,684,463	-		GFF3635	0.77	-2.3
3,684,464	-		GFF3635	0.77	+0.2
3,684,466	+		GFF3635	0.78	+0.3
3,684,474	-		GFF3635	0.78	-0.2
3,684,474	-		GFF3635	0.78	+0.9
3,684,478	+		GFF3635	0.79	-1.5
3,684,478	+		GFF3635	0.79	+0.5
3,684,486	-		GFF3635	0.79	+0.7
3,684,486	-		GFF3635	0.79	+0.0
3,684,501	+		GFF3635	0.81	+0.4
3,684,570	-		GFF3635	0.86	+0.8
3,684,613	-				-0.5
3,684,646	+				-0.9
3,684,654	-				+1.2
3,684,672	+				+0.1
3,684,712	-				+0.0
3,684,717	-				-2.4
3,684,737	-				+0.6
3,684,742	+				+0.8
3,684,742	+				-1.5
3,684,748	-				-1.1
3,684,748	-				+0.2
3,684,748	-				+0.0
3,684,765	-				-1.6
3,684,779	+				-0.8
3,684,785	+				+0.4
3,684,785	+				-0.6
3,684,794	-				-1.0
3,684,796	+				+1.1
3,684,820	-				-0.6
3,684,840	+		GFF3636	0.11	-0.2
3,684,840	+		GFF3636	0.11	+0.8
3,684,840	+		GFF3636	0.11	+0.6
3,684,855	+		GFF3636	0.13	-0.6
3,684,855	+		GFF3636	0.13	-1.2
3,684,855	+		GFF3636	0.13	-0.2
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3,685,251	-		GFF3636	0.53	-1.1
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3,685,422	-		GFF3636	0.71	-2.6
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3,685,504	+		GFF3636	0.79	+0.2
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3,685,565	+		GFF3636	0.85	+0.9
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3,685,573	-		GFF3636	0.86	-0.7
3,685,599	+		GFF3636	0.89	-0.5
3,685,620	+				+0.2
3,685,628	-				+0.3
3,685,638	-				-0.6
3,685,638	-				-1.6
3,685,638	-				-0.5
3,685,643	+				+1.0
3,685,657	+				+1.0
3,685,667	-				-0.0
3,685,667	-				-1.1
3,685,669	+				+0.4
3,685,672	-				-1.3
3,685,674	+				-0.1
3,685,674	+				+0.2
3,685,674	+				+0.5
3,685,674	+				+0.2
3,685,674	+				-2.1
3,685,679	+				-1.6
3,685,682	-				+1.5
3,685,682	-				-0.2
3,685,682	-				+0.2
3,685,689	-				+0.4
3,685,694	+				-1.6
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3,685,726	+		GFF3637	0.12	-0.4
3,685,726	+		GFF3637	0.12	+1.4
3,685,726	+		GFF3637	0.12	-0.3