Strain Fitness in Sphingobium sp. HT1-2 around GFF3625

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,673,279	+		GFF3624	0.31	+1.1
3,673,285	+		GFF3624	0.32	-0.7
3,673,285	+		GFF3624	0.32	+0.5
3,673,293	-		GFF3624	0.32	-2.0
3,673,294	-		GFF3624	0.32	-0.3
3,673,298	-		GFF3624	0.33	-0.5
3,673,300	-		GFF3624	0.33	+0.4
3,673,325	+		GFF3624	0.35	-1.6
3,673,325	+		GFF3624	0.35	+0.2
3,673,325	+		GFF3624	0.35	+1.4
3,673,335	+		GFF3624	0.35	-0.2
3,673,335	+		GFF3624	0.35	-0.3
3,673,335	+		GFF3624	0.35	-1.8
3,673,335	+		GFF3624	0.35	-1.4
3,673,336	+		GFF3624	0.35	-0.1
3,673,338	+		GFF3624	0.36	-0.6
3,673,343	-		GFF3624	0.36	-0.7
3,673,343	-		GFF3624	0.36	-1.2
3,673,343	-		GFF3624	0.36	-1.3
3,673,344	-		GFF3624	0.36	-0.8
3,673,344	-		GFF3624	0.36	+0.0
3,673,344	-		GFF3624	0.36	-2.2
3,673,353	-		GFF3624	0.37	-2.2
3,673,355	+		GFF3624	0.37	-0.8
3,673,355	+		GFF3624	0.37	+0.5
3,673,355	+		GFF3624	0.37	-1.0
3,673,355	+		GFF3624	0.37	-1.2
3,673,355	+		GFF3624	0.37	+1.5
3,673,355	+		GFF3624	0.37	-1.5
3,673,363	-		GFF3624	0.37	-0.6
3,673,363	-		GFF3624	0.37	-0.9
3,673,363	-		GFF3624	0.37	-2.1
3,673,363	-		GFF3624	0.37	+0.3
3,673,371	-		GFF3624	0.38	-0.8
3,673,432	-		GFF3624	0.43	-2.2
3,673,476	+		GFF3624	0.46	-1.5
3,673,483	+		GFF3624	0.46	-0.6
3,673,483	+		GFF3624	0.46	-0.6
3,673,483	+		GFF3624	0.46	+0.0
3,673,483	+		GFF3624	0.46	+0.2
3,673,483	+		GFF3624	0.46	+0.0
3,673,489	-		GFF3624	0.47	+0.6
3,673,491	-		GFF3624	0.47	-0.2
3,673,491	-		GFF3624	0.47	-0.8
3,673,491	-		GFF3624	0.47	-0.2
3,673,491	-		GFF3624	0.47	-0.9
3,673,491	-		GFF3624	0.47	-0.6
3,673,496	-		GFF3624	0.47	-1.0
3,673,496	-		GFF3624	0.47	-1.8
3,673,561	+		GFF3624	0.52	+0.5
3,673,568	+		GFF3624	0.53	-0.0
3,673,570	-		GFF3624	0.53	+0.4
3,673,573	+		GFF3624	0.53	+0.5
3,673,586	+		GFF3624	0.54	-1.2
3,673,596	+		GFF3624	0.55	+0.7
3,673,596	+		GFF3624	0.55	-0.1
3,673,596	+		GFF3624	0.55	-0.2
3,673,604	-		GFF3624	0.55	+0.1
3,673,623	+		GFF3624	0.57	+0.4
3,673,638	-		GFF3624	0.58	-1.5
3,673,643	+		GFF3624	0.58	+0.2
3,673,643	+		GFF3624	0.58	-1.0
3,673,663	+		GFF3624	0.60	+0.5
3,673,671	-		GFF3624	0.60	-0.8
3,673,694	+		GFF3624	0.62	+0.2
3,673,694	+		GFF3624	0.62	-1.8
3,673,694	+		GFF3624	0.62	-0.0
3,673,694	+		GFF3624	0.62	-1.2
3,673,702	-		GFF3624	0.63	+0.1
3,673,702	-		GFF3624	0.63	+0.2
3,673,741	-		GFF3624	0.66	+0.3
3,673,751	-		GFF3624	0.66	-0.8
3,673,753	+		GFF3624	0.67	-1.9
3,673,753	+		GFF3624	0.67	+0.5
3,673,753	+		GFF3624	0.67	-1.8
3,673,754	+		GFF3624	0.67	-0.1
3,673,761	-		GFF3624	0.67	+1.8
3,673,761	-		GFF3624	0.67	-0.4
3,673,775	+		GFF3624	0.68	+0.2
3,673,775	-		GFF3624	0.68	+0.9
3,673,783	-		GFF3624	0.69	-1.7
3,673,783	-		GFF3624	0.69	-0.1
3,673,829	-		GFF3624	0.72	+0.2
3,673,842	-		GFF3624	0.73	-1.5
3,673,842	-		GFF3624	0.73	+0.3
3,673,849	+		GFF3624	0.74	-0.9
3,673,855	-		GFF3624	0.74	-1.2
3,673,857	+		GFF3624	0.74	+1.2
3,673,865	-		GFF3624	0.75	-2.2
3,673,867	+		GFF3624	0.75	-0.4
3,673,875	-		GFF3624	0.76	-0.3
3,673,897	+		GFF3624	0.77	-1.2
3,673,905	-		GFF3624	0.78	+0.0
3,673,905	-		GFF3624	0.78	-0.1
3,673,906	-		GFF3624	0.78	-0.6
3,673,906	-		GFF3624	0.78	-0.8
3,673,906	-		GFF3624	0.78	+0.7
3,673,906	-		GFF3624	0.78	-0.8
3,673,912	-		GFF3624	0.78	+0.2
3,673,924	-		GFF3624	0.79	-2.5
3,673,988	-		GFF3624	0.84	-0.8
3,674,015	+		GFF3624	0.86	-0.6
3,674,023	-		GFF3624	0.87	-0.2
3,674,023	-		GFF3624	0.87	+0.8
3,674,023	-		GFF3624	0.87	-0.1
3,674,025	+		GFF3624	0.87	+0.7
3,674,064	-		GFF3624	0.90	+0.0
3,674,064	-		GFF3624	0.90	+0.2
3,674,068	-				-1.3
3,674,074	-				+0.1
3,674,086	-				+0.3
3,674,097	+				-0.1
3,674,097	+				-0.5
3,674,105	-				-0.3
3,674,105	-				-0.2
3,674,105	-				-1.7
3,674,105	-				-0.6
3,674,109	+				-1.2
3,674,134	+				+1.0
3,674,142	-				+0.2
3,674,142	-				+0.5
3,674,157	-				-1.3
3,674,163	+				+1.2
3,674,163	+				-0.3
3,674,168	+				-0.7
3,674,176	+				-1.8
3,674,203	-				-0.6
3,674,277	-				-0.1
3,674,279	+				-0.5
3,674,279	+				-1.8
3,674,300	+				-0.9
3,674,300	+				+0.1
3,674,300	+				-0.7
3,674,303	-				-2.1
3,674,303	-				-1.5
3,674,304	+				+0.2
3,674,309	+				-0.4
3,674,309	+				-0.0
3,674,309	+				+0.2
3,674,312	-				+0.8
3,674,314	+				-2.5
3,674,316	+				-0.4
3,674,317	-				+0.5
3,674,328	+		GFF3625	0.11	-0.5
3,674,336	-		GFF3625	0.12	+1.2
3,674,367	+		GFF3625	0.17	+0.3
3,674,373	+		GFF3625	0.18	-0.8
3,674,506	-		GFF3625	0.38	-1.1
3,674,508	+		GFF3625	0.39	-2.1
3,674,508	+		GFF3625	0.39	-0.9
3,674,508	+		GFF3625	0.39	+1.0
3,674,508	+		GFF3625	0.39	-1.7
3,674,508	+		GFF3625	0.39	+0.8
3,674,508	+		GFF3625	0.39	-1.2
3,674,511	-		GFF3625	0.39	-0.4
3,674,516	-		GFF3625	0.40	-1.8
3,674,516	-		GFF3625	0.40	+0.7
3,674,532	-		GFF3625	0.42	-1.3
3,674,537	-		GFF3625	0.43	-0.0
3,674,547	+		GFF3625	0.45	-0.2
3,674,547	+		GFF3625	0.45	-0.3
3,674,547	+		GFF3625	0.45	-2.1
3,674,547	+		GFF3625	0.45	-0.3
3,674,547	+		GFF3625	0.45	+0.2
3,674,555	-		GFF3625	0.46	-0.2
3,674,555	-		GFF3625	0.46	-1.1
3,674,555	-		GFF3625	0.46	-2.3
3,674,558	+		GFF3625	0.46	-0.0
3,674,568	+		GFF3625	0.48	-1.2
3,674,589	+		GFF3625	0.51	+0.3
3,674,589	+		GFF3625	0.51	-0.1
3,674,589	+		GFF3625	0.51	+1.1
3,674,594	+		GFF3625	0.52	-1.6
3,674,597	-		GFF3625	0.52	+0.7
3,674,597	-		GFF3625	0.52	-1.8
3,674,597	-		GFF3625	0.52	-0.6
3,674,597	-		GFF3625	0.52	+1.1
3,674,602	-		GFF3625	0.53	-0.7
3,674,625	-		GFF3625	0.57	-1.7
3,674,629	+		GFF3625	0.57	-0.8
3,674,629	+		GFF3625	0.57	-1.9
3,674,630	-		GFF3625	0.57	+0.3
3,674,637	-		GFF3625	0.58	+0.8
3,674,642	-		GFF3625	0.59	-1.5
3,674,654	+		GFF3625	0.61	+1.3
3,674,660	+		GFF3625	0.62	+0.2
3,674,670	+		GFF3625	0.63	-0.5
3,674,670	+		GFF3625	0.63	+0.6
3,674,677	+		GFF3625	0.65	-2.5
3,674,678	-		GFF3625	0.65	-1.3
3,674,678	-		GFF3625	0.65	-1.6
3,674,678	-		GFF3625	0.65	-1.2
3,674,685	-		GFF3625	0.66	-1.7
3,674,694	+		GFF3625	0.67	-1.8
3,674,706	+		GFF3625	0.69	-1.1
3,674,714	-		GFF3625	0.70	+0.4
3,674,738	-		GFF3625	0.74	+0.5
3,674,740	+		GFF3625	0.74	-0.6
3,674,740	+		GFF3625	0.74	-2.1
3,674,740	+		GFF3625	0.74	-1.6
3,674,740	+		GFF3625	0.74	+0.2
3,674,740	+		GFF3625	0.74	-0.9
3,674,740	+		GFF3625	0.74	-0.6
3,674,740	+		GFF3625	0.74	-0.9
3,674,748	-		GFF3625	0.75	+1.2
3,674,748	-		GFF3625	0.75	-1.7
3,674,748	-		GFF3625	0.75	+0.0
3,674,748	-		GFF3625	0.75	+0.7
3,674,753	-		GFF3625	0.76	-0.5
3,674,758	-		GFF3625	0.77	+0.1
3,674,758	-		GFF3625	0.77	-0.2
3,674,758	-		GFF3625	0.77	+0.2
3,674,758	-		GFF3625	0.77	+1.2
3,674,761	+		GFF3625	0.77	+0.1
3,674,773	-		GFF3625	0.79	-1.1
3,674,839	+		GFF3625	0.89	+0.3
3,674,839	-		GFF3625	0.89	-2.0
3,674,857	-				+0.4
3,674,879	+				-0.2
3,674,887	-				+0.5
3,674,957	-				-1.2
3,674,960	+				+0.4
3,674,995	-				+0.5
3,675,017	+				-0.4
3,675,017	-				-1.4
3,675,022	+				-0.8
3,675,022	+				-0.9
3,675,030	-				-2.5
3,675,030	-				+0.4
3,675,034	+				+0.3
3,675,034	+				-1.3
3,675,034	+				+0.7
3,675,034	+				-0.2
3,675,034	+				-0.6
3,675,034	+				-1.5
3,675,042	-				-1.3
3,675,042	-				+0.2
3,675,042	-				-2.6
3,675,042	-				+1.3
3,675,042	-				+0.2
3,675,042	-				+0.5
3,675,042	-				+0.7
3,675,052	+				+0.2
3,675,052	+				-2.4
3,675,052	+				-2.1
3,675,052	+				+0.9
3,675,052	+				+0.6
3,675,052	+				-0.8
3,675,052	+				+0.5
3,675,052	+				+1.1
3,675,052	+				-0.5
3,675,052	+				-0.8
3,675,052	+				-0.6
3,675,060	-				+0.1
3,675,060	-				-1.6
3,675,060	-				-0.5
3,675,060	-				-0.1
3,675,060	-				-0.3
3,675,060	-				-0.1
3,675,062	+				-1.0
3,675,065	-				-0.1
3,675,069	-				+1.6
3,675,117	-		GFF3626	0.14	-0.3
3,675,125	-		GFF3626	0.15	+0.2
3,675,129	-		GFF3626	0.16	-1.1
3,675,137	+		GFF3626	0.17	+1.0
3,675,147	+		GFF3626	0.18	-0.0
3,675,152	+		GFF3626	0.19	-3.3
3,675,155	-		GFF3626	0.19	-0.3
3,675,160	-		GFF3626	0.20	+0.9
3,675,169	+		GFF3626	0.21	+0.0
3,675,172	-		GFF3626	0.21	-0.3
3,675,174	+		GFF3626	0.22	-1.2
3,675,183	+		GFF3626	0.23	-0.3
3,675,188	+		GFF3626	0.23	-2.2
3,675,196	-		GFF3626	0.24	-2.7
3,675,201	-		GFF3626	0.25	-1.3
3,675,201	-		GFF3626	0.25	-1.2
3,675,222	+		GFF3626	0.28	-0.0
3,675,222	+		GFF3626	0.28	-0.6
3,675,222	+		GFF3626	0.28	-0.0
3,675,247	+		GFF3626	0.31	-1.2
3,675,277	+		GFF3626	0.35	-1.8
3,675,294	+		GFF3626	0.37	-0.1
3,675,294	+		GFF3626	0.37	+0.4
3,675,323	+		GFF3626	0.40	-0.1
3,675,323	+		GFF3626	0.40	-0.8
3,675,323	+		GFF3626	0.40	-1.0
3,675,323	+		GFF3626	0.40	+0.1
3,675,323	+		GFF3626	0.40	+0.2
3,675,323	+		GFF3626	0.40	+1.1
3,675,325	+		GFF3626	0.41	-0.6
3,675,325	+		GFF3626	0.41	+0.4
3,675,330	+		GFF3626	0.41	+1.2
3,675,330	+		GFF3626	0.41	+1.1
3,675,331	-		GFF3626	0.41	+0.4
3,675,331	-		GFF3626	0.41	-0.3
3,675,331	-		GFF3626	0.41	-0.2
3,675,331	-		GFF3626	0.41	+0.7
3,675,331	-		GFF3626	0.41	-1.0
3,675,331	-		GFF3626	0.41	+0.8
3,675,331	-		GFF3626	0.41	+0.5
3,675,331	-		GFF3626	0.41	-0.7
3,675,331	-		GFF3626	0.41	-1.6
3,675,331	-		GFF3626	0.41	-1.8
3,675,331	-		GFF3626	0.41	-0.2
3,675,333	-		GFF3626	0.42	-2.0
3,675,338	-		GFF3626	0.42	-0.4
3,675,371	+		GFF3626	0.46	-1.0
3,675,373	+		GFF3626	0.47	-0.8
3,675,377	+		GFF3626	0.47	+0.3
3,675,381	-		GFF3626	0.48	-1.6
3,675,388	+		GFF3626	0.49	+1.0
3,675,392	+		GFF3626	0.49	+0.4
3,675,392	+		GFF3626	0.49	-2.1
3,675,399	+		GFF3626	0.50	-0.8
3,675,399	+		GFF3626	0.50	+0.4
3,675,400	-		GFF3626	0.50	+0.5
3,675,415	+		GFF3626	0.52	-0.6
3,675,436	-		GFF3626	0.55	+0.6
3,675,436	-		GFF3626	0.55	-0.9
3,675,436	-		GFF3626	0.55	+1.5
3,675,443	-		GFF3626	0.56	-0.4
3,675,443	-		GFF3626	0.56	-1.1
3,675,455	-		GFF3626	0.57	+0.7
3,675,482	-		GFF3626	0.60	-1.2
3,675,484	+		GFF3626	0.61	-0.4
3,675,494	-		GFF3626	0.62	+0.8
3,675,522	-		GFF3626	0.66	+0.3
3,675,533	+		GFF3626	0.67	-0.8
3,675,559	+		GFF3626	0.70	+0.2
3,675,565	+		GFF3626	0.71	-0.1
3,675,565	+		GFF3626	0.71	-1.5
3,675,565	+		GFF3626	0.71	-0.3
3,675,565	+		GFF3626	0.71	-0.2
3,675,565	+		GFF3626	0.71	-2.5
3,675,565	+		GFF3626	0.71	+0.5
3,675,565	+		GFF3626	0.71	-0.3
3,675,565	+		GFF3626	0.71	+0.3
3,675,565	+		GFF3626	0.71	-0.3
3,675,573	-		GFF3626	0.72	+0.1
3,675,573	-		GFF3626	0.72	-0.6
3,675,573	-		GFF3626	0.72	+0.3
3,675,573	-		GFF3626	0.72	-0.3
3,675,573	-		GFF3626	0.72	-1.3
3,675,573	-		GFF3626	0.72	-1.5
3,675,573	-		GFF3626	0.72	-0.4
3,675,573	-		GFF3626	0.72	+0.7
3,675,573	-		GFF3626	0.72	+0.1
3,675,573	-		GFF3626	0.72	-1.3
3,675,573	-		GFF3626	0.72	-0.8
3,675,573	-		GFF3626	0.72	-1.2
3,675,573	-		GFF3626	0.72	+0.9
3,675,573	-		GFF3626	0.72	-2.6
3,675,575	+		GFF3626	0.72	-0.7
3,675,575	+		GFF3626	0.72	-0.7
3,675,591	-		GFF3626	0.74	-0.4
3,675,608	-		GFF3626	0.76	+1.5
3,675,608	-		GFF3626	0.76	-0.2
3,675,668	+		GFF3626	0.84	-0.9
3,675,682	-		GFF3626	0.86	-0.1
3,675,692	-		GFF3626	0.87	-0.1
3,675,731	-				-2.2
3,675,732	-				-2.0
3,675,732	-				-1.6
3,675,747	+				-0.5
3,675,775	+				-1.2
3,675,775	+				-0.5
3,675,775	+				-0.2
3,675,782	+				+1.0
3,675,783	-				-0.3
3,675,783	-				-0.3
3,675,805	-				-0.3
3,675,817	+				-1.7
3,675,844	-				-0.8
3,675,844	-				-3.0
3,675,849	-				+0.4
3,675,851	-				-0.5
3,675,862	+				-0.6
3,675,863	+				-0.2
3,675,863	+				-0.6
3,675,863	+				+0.8
3,675,863	+				-1.9
3,675,863	+				-0.9
3,675,863	+				+0.1
3,675,871	-				-1.4
3,675,871	-				-0.6
3,675,876	-				+0.3
3,675,887	+				-1.5
3,675,899	-				+1.0
3,675,901	+				-1.3
3,675,901	+				-0.5
3,675,901	+				-1.0
3,675,901	+				+0.9
3,675,901	+				-0.9