Strain Fitness in Sphingobium sp. HT1-2 around GFF3605

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,649,799	+		GFF3604	0.55	+0.1
3,649,799	+		GFF3604	0.55	-0.3
3,649,825	-		GFF3604	0.56	+0.5
3,649,879	-		GFF3604	0.59	+0.2
3,649,904	-		GFF3604	0.60	-0.5
3,649,915	+		GFF3604	0.60	-1.0
3,649,915	+		GFF3604	0.60	-1.2
3,649,920	+		GFF3604	0.61	-0.5
3,649,920	+		GFF3604	0.61	-1.3
3,650,020	+		GFF3604	0.65	+0.1
3,650,022	-		GFF3604	0.66	-0.2
3,650,110	-		GFF3604	0.70	-1.6
3,650,112	-		GFF3604	0.70	+1.8
3,650,126	+		GFF3604	0.71	-2.4
3,650,131	+		GFF3604	0.71	+0.4
3,650,134	-		GFF3604	0.71	+0.7
3,650,134	-		GFF3604	0.71	-1.3
3,650,162	+		GFF3604	0.72	-0.2
3,650,172	+		GFF3604	0.73	-1.6
3,650,172	+		GFF3604	0.73	+0.0
3,650,172	+		GFF3604	0.73	-2.3
3,650,180	-		GFF3604	0.73	-0.5
3,650,180	-		GFF3604	0.73	+0.2
3,650,195	+		GFF3604	0.74	+0.0
3,650,198	-		GFF3604	0.74	-2.8
3,650,207	-		GFF3604	0.74	-1.1
3,650,232	-		GFF3604	0.76	-1.3
3,650,241	+		GFF3604	0.76	-0.8
3,650,241	+		GFF3604	0.76	-1.2
3,650,270	+		GFF3604	0.77	-0.2
3,650,280	+		GFF3604	0.78	-1.3
3,650,280	-		GFF3604	0.78	-2.1
3,650,303	+		GFF3604	0.79	-0.0
3,650,309	+		GFF3604	0.79	+0.1
3,650,311	-		GFF3604	0.79	-1.3
3,650,333	+		GFF3604	0.80	-0.6
3,650,341	-		GFF3604	0.81	-0.3
3,650,381	-		GFF3604	0.83	-1.2
3,650,382	+		GFF3604	0.83	+1.6
3,650,388	+		GFF3604	0.83	-0.8
3,650,500	+		GFF3604	0.88	+0.6
3,650,507	-		GFF3604	0.89	+0.9
3,650,567	+				+1.4
3,650,591	-				+0.8
3,650,592	-				-0.3
3,650,616	-				+1.5
3,650,622	-				-0.6
3,650,635	+				-0.0
3,650,635	+				-1.7
3,650,635	+				+1.5
3,650,640	+				-0.8
3,650,640	+				-0.3
3,650,643	-				-1.1
3,650,643	-				-0.2
3,650,643	-				-1.3
3,650,661	-				-0.2
3,650,711	+				-0.3
3,650,711	+				+0.1
3,650,711	+				+0.8
3,650,722	+				+0.4
3,650,722	+				+1.6
3,650,722	+				-2.5
3,650,732	+				-0.2
3,650,740	-				-2.3
3,650,740	-				-1.8
3,650,764	+				-1.2
3,650,764	+				-1.7
3,650,772	-				+1.1
3,650,772	-				-1.2
3,651,065	+				-1.5
3,651,073	-				+0.6
3,651,074	+				-1.3
3,651,076	+				-1.0
3,651,078	-				-1.3
3,651,093	+				+1.6
3,651,098	+				+0.5
3,651,102	+				+0.4
3,651,103	+				-0.8
3,651,112	+				+0.2
3,651,112	+				-0.5
3,651,119	+				-2.5
3,651,119	+				-0.7
3,651,119	+				+0.8
3,651,119	+				+0.1
3,651,119	-				-0.8
3,651,120	-				-0.1
3,651,120	-				-1.3
3,651,127	-				+0.3
3,651,127	-				-1.8
3,651,127	-				+0.6
3,651,127	-				-0.3
3,651,127	-				-2.4
3,651,129	+				+0.6
3,651,129	+				-0.6
3,651,129	+				+0.1
3,651,129	+				+0.7
3,651,129	+				-0.4
3,651,129	+				-1.1
3,651,129	+				-1.1
3,651,130	-				-0.7
3,651,130	-				-0.5
3,651,135	-				+0.6
3,651,137	+				+0.3
3,651,137	+				-0.3
3,651,137	-				-1.6
3,651,166	+				+1.1
3,651,173	-				-0.9
3,651,173	-				+0.7
3,651,181	-				-0.8
3,651,186	+				-0.5
3,651,228	-				-0.1
3,651,256	-				-0.8
3,651,265	+				-0.5
3,651,273	-				-0.0
3,651,273	-				-1.7
3,651,274	-				-1.5
3,651,311	-				-0.2
3,651,333	+				-0.3
3,651,352	-				-0.1
3,651,366	+				-0.5
3,651,367	-				+0.9
3,651,391	+				-1.5
3,651,398	-				+0.2
3,651,413	+				+0.7
3,651,413	+				+0.9
3,651,413	+				+1.1
3,651,421	-				-0.6
3,651,421	-				+0.9
3,651,421	-				-0.3
3,651,421	-				-3.0
3,651,421	-				-1.2
3,651,421	-				+0.1
3,651,422	+				-0.5
3,651,428	+				-1.0
3,651,434	+				-0.1
3,651,434	+				-0.2
3,651,439	+				+0.7
3,651,439	+				-1.7
3,651,439	+				-0.0
3,651,439	+				-0.3
3,651,439	+				-0.6
3,651,439	+				+0.7
3,651,442	-				+0.0
3,651,444	+				-0.2
3,651,444	+				-1.3
3,651,447	-				-0.9
3,651,447	-				+0.5
3,651,449	+				+0.8
3,651,449	+				-0.5
3,651,452	-				-0.2
3,651,452	-				-1.3
3,651,452	-				-0.0
3,651,462	+				+1.1
3,651,462	+				+0.1
3,651,465	-				+0.1
3,651,502	+				+0.2
3,651,502	+				-1.8
3,651,502	+				-1.0
3,651,502	+				+1.0
3,651,502	+				-0.7
3,651,502	+				-0.6
3,651,502	+				+0.2
3,651,502	+				-0.3
3,651,509	-				-1.1
3,651,510	-				-0.3
3,651,510	-				+0.3
3,651,510	-				-1.8
3,651,520	+				+0.2
3,651,525	+				-0.0
3,651,529	-				-0.6
3,651,529	-				+0.2
3,651,533	-				+0.2
3,651,533	-				-0.1
3,651,533	-				-2.0
3,651,538	+				+0.7
3,651,538	+				-0.8
3,651,539	-				-0.1
3,651,540	+				-0.2
3,651,540	+				-0.6
3,651,548	-		GFF3606	0.10	+0.5
3,651,548	-		GFF3606	0.10	-0.9
3,651,555	+		GFF3606	0.10	-1.0
3,651,555	+		GFF3606	0.10	+0.4
3,651,555	+		GFF3606	0.10	-0.5
3,651,555	+		GFF3606	0.10	-1.8
3,651,555	+		GFF3606	0.10	-0.7
3,651,555	+		GFF3606	0.10	-0.8
3,651,555	+		GFF3606	0.10	-1.2
3,651,555	+		GFF3606	0.10	-0.1
3,651,555	+		GFF3606	0.10	-1.3
3,651,555	+		GFF3606	0.10	-0.2
3,651,555	+		GFF3606	0.10	+0.9
3,651,563	-		GFF3606	0.11	-0.4
3,651,563	-		GFF3606	0.11	-1.7
3,651,563	-		GFF3606	0.11	-1.6
3,651,563	-		GFF3606	0.11	-0.2
3,651,563	-		GFF3606	0.11	-0.1
3,651,563	-		GFF3606	0.11	+1.5
3,651,563	-		GFF3606	0.11	-0.6
3,651,563	-		GFF3606	0.11	-0.6
3,651,563	-		GFF3606	0.11	-1.2
3,651,563	-		GFF3606	0.11	+0.7
3,651,563	-		GFF3606	0.11	+0.5
3,651,563	-		GFF3606	0.11	+0.8
3,651,563	-		GFF3606	0.11	-0.4
3,651,563	-		GFF3606	0.11	-1.3
3,651,605	-		GFF3606	0.12	+0.2
3,651,605	-		GFF3606	0.12	-0.0
3,651,605	-		GFF3606	0.12	-0.3
3,651,632	+		GFF3606	0.13	-0.7
3,651,638	+		GFF3606	0.13	-0.2
3,651,659	-		GFF3606	0.13	-1.6
3,651,661	+		GFF3606	0.13	+0.5
3,651,669	+		GFF3606	0.14	-1.2
3,651,671	+		GFF3606	0.14	-1.2
3,651,671	+		GFF3606	0.14	-0.8
3,651,671	+		GFF3606	0.14	-0.3
3,651,671	+		GFF3606	0.14	-0.6
3,651,671	+		GFF3606	0.14	-1.0
3,651,671	+		GFF3606	0.14	-1.7
3,651,671	+		GFF3606	0.14	+1.0
3,651,671	+		GFF3606	0.14	+0.9
3,651,671	+		GFF3606	0.14	+0.2
3,651,679	-		GFF3606	0.14	-0.0
3,651,679	-		GFF3606	0.14	+0.2
3,651,679	-		GFF3606	0.14	+0.7
3,651,679	-		GFF3606	0.14	-0.1
3,651,679	-		GFF3606	0.14	-2.1
3,651,679	-		GFF3606	0.14	-1.9
3,651,769	+		GFF3606	0.17	+1.2
3,651,769	+		GFF3606	0.17	-0.9
3,651,786	+		GFF3606	0.17	-0.5
3,651,786	+		GFF3606	0.17	-0.8
3,651,786	+		GFF3606	0.17	-1.4
3,651,795	+		GFF3606	0.17	-2.1
3,651,800	+		GFF3606	0.17	-1.0
3,651,805	+		GFF3606	0.18	+1.1
3,651,805	+		GFF3606	0.18	+0.2
3,651,821	+		GFF3606	0.18	-2.1
3,651,828	+		GFF3606	0.18	+0.2
3,651,828	+		GFF3606	0.18	+0.0
3,651,828	+		GFF3606	0.18	-0.1
3,651,828	+		GFF3606	0.18	-1.2
3,651,828	+		GFF3606	0.18	-2.3
3,651,828	+		GFF3606	0.18	-1.3
3,651,828	+		GFF3606	0.18	+0.7
3,651,828	+		GFF3606	0.18	-0.8
3,651,828	+		GFF3606	0.18	-0.3
3,651,828	+		GFF3606	0.18	-0.2
3,651,828	+		GFF3606	0.18	-0.7
3,651,836	-		GFF3606	0.18	+2.0
3,651,836	-		GFF3606	0.18	-2.0
3,651,836	-		GFF3606	0.18	-1.8
3,651,836	-		GFF3606	0.18	-1.7
3,651,836	-		GFF3606	0.18	-0.8
3,651,836	-		GFF3606	0.18	-2.1
3,651,836	-		GFF3606	0.18	+0.7
3,651,836	-		GFF3606	0.18	-0.4
3,651,836	-		GFF3606	0.18	-0.5
3,651,846	-		GFF3606	0.19	-0.2
3,651,855	-		GFF3606	0.19	-0.1
3,651,857	+		GFF3606	0.19	-0.8
3,651,859	+		GFF3606	0.19	+1.0
3,651,881	-		GFF3606	0.20	-1.9
3,651,899	+		GFF3606	0.20	+0.4
3,651,906	+		GFF3606	0.20	-0.0
3,651,933	-		GFF3606	0.21	-1.2
3,651,937	+		GFF3606	0.21	-0.0
3,651,939	+		GFF3606	0.21	+0.4
3,651,947	-		GFF3606	0.22	+0.4
3,651,947	-		GFF3606	0.22	-0.1
3,651,947	-		GFF3606	0.22	-1.7
3,651,951	+		GFF3606	0.22	-1.2
3,651,988	+		GFF3606	0.23	-2.6
3,651,988	+		GFF3606	0.23	+0.9
3,651,988	+		GFF3606	0.23	-1.8
3,651,996	-		GFF3606	0.23	-1.5
3,652,043	+		GFF3606	0.24	-1.2
3,652,056	+		GFF3606	0.25	-0.0