Strain Fitness in Sphingobium sp. HT1-2 around GFF3594

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,636,867	+				-0.2
3,636,930	+				-0.2
3,636,940	+				+1.1
3,636,948	-				+0.4
3,636,957	+				+0.7
3,636,957	+				-1.1
3,636,963	-				-1.0
3,636,987	-		GFF3593	0.15	+0.1
3,636,987	-		GFF3593	0.15	-0.2
3,637,012	+		GFF3593	0.23	-0.6
3,637,012	+		GFF3593	0.23	-1.4
3,637,012	+		GFF3593	0.23	-1.6
3,637,020	-		GFF3593	0.25	+0.0
3,637,027	+		GFF3593	0.27	+0.3
3,637,034	+		GFF3593	0.29	+1.7
3,637,034	+		GFF3593	0.29	-1.3
3,637,070	+		GFF3593	0.40	-0.7
3,637,070	-		GFF3593	0.40	-0.9
3,637,075	+		GFF3593	0.41	-1.9
3,637,078	+		GFF3593	0.42	-1.1
3,637,084	+		GFF3593	0.44	+1.3
3,637,092	-		GFF3593	0.46	-1.7
3,637,097	+		GFF3593	0.48	-0.8
3,637,100	-		GFF3593	0.49	-0.4
3,637,114	+		GFF3593	0.53	-0.2
3,637,115	-		GFF3593	0.53	+1.4
3,637,142	+		GFF3593	0.61	-0.2
3,637,142	+		GFF3593	0.61	-0.4
3,637,142	+		GFF3593	0.61	+0.5
3,637,150	-		GFF3593	0.63	-0.2
3,637,150	-		GFF3593	0.63	+1.0
3,637,150	-		GFF3593	0.63	-0.9
3,637,150	-		GFF3593	0.63	-0.6
3,637,150	-		GFF3593	0.63	-0.7
3,637,185	+		GFF3593	0.73	-0.3
3,637,192	+		GFF3593	0.75	-0.2
3,637,200	-		GFF3593	0.78	-0.7
3,637,200	-		GFF3593	0.78	+0.4
3,637,200	-		GFF3593	0.78	+0.8
3,637,225	-		GFF3593	0.85	-1.7
3,637,242	+				-0.2
3,637,250	-				+0.2
3,637,251	-				-1.0
3,637,252	+				+0.4
3,637,278	-				-0.2
3,637,285	-				-0.7
3,637,286	+				-0.2
3,637,299	-				-0.3
3,637,348	+				-0.3
3,637,356	-				+1.4
3,637,358	-				+0.8
3,637,370	+				+0.8
3,637,370	+				-1.3
3,637,370	+				-1.2
3,637,373	-				-0.8
3,637,376	+				-0.0
3,637,378	-				-2.2
3,637,378	-				+0.4
3,637,378	-				-0.3
3,637,378	-				+0.4
3,637,397	-				+0.1
3,637,413	-				-0.6
3,637,457	-				-1.7
3,637,459	+				-1.1
3,637,459	+				-0.6
3,637,459	+				-0.1
3,637,459	+				-0.4
3,637,465	+				-1.0
3,637,467	-				+0.6
3,637,467	-				-0.7
3,637,524	+		GFF3594	0.12	-0.3
3,637,542	+		GFF3594	0.14	+1.0
3,637,546	+		GFF3594	0.14	-1.4
3,637,549	-		GFF3594	0.14	+0.6
3,637,550	-		GFF3594	0.14	-0.4
3,637,566	+		GFF3594	0.15	+0.3
3,637,570	+		GFF3594	0.16	-1.3
3,637,582	-		GFF3594	0.17	-1.2
3,637,591	-		GFF3594	0.17	+0.5
3,637,596	-		GFF3594	0.18	-0.8
3,637,604	-		GFF3594	0.18	+1.0
3,637,606	+		GFF3594	0.18	+2.1
3,637,606	+		GFF3594	0.18	+0.0
3,637,669	-		GFF3594	0.23	+0.6
3,637,669	-		GFF3594	0.23	-0.4
3,637,700	-		GFF3594	0.25	-1.3
3,637,713	+		GFF3594	0.26	+2.0
3,637,722	+		GFF3594	0.27	+0.8
3,637,722	+		GFF3594	0.27	-0.3
3,637,783	-		GFF3594	0.31	+0.3
3,637,898	+		GFF3594	0.39	+0.7
3,637,906	+		GFF3594	0.40	-1.1
3,637,911	-		GFF3594	0.40	-0.2
3,637,937	-		GFF3594	0.42	-0.2
3,637,937	-		GFF3594	0.42	+0.2
3,637,939	-		GFF3594	0.42	+0.5
3,637,954	-		GFF3594	0.43	+1.7
3,637,997	+		GFF3594	0.47	-0.3
3,638,025	-		GFF3594	0.49	-1.3
3,638,028	+		GFF3594	0.49	+1.6
3,638,030	-		GFF3594	0.49	+1.1
3,638,049	+		GFF3594	0.50	-1.6
3,638,051	-		GFF3594	0.50	+0.8
3,638,051	-		GFF3594	0.50	+1.2
3,638,087	-		GFF3594	0.53	-0.7
3,638,118	+		GFF3594	0.55	-0.7
3,638,126	-		GFF3594	0.56	-0.6
3,638,136	-		GFF3594	0.57	-1.6
3,638,141	-		GFF3594	0.57	-0.6
3,638,155	+		GFF3594	0.58	+0.2
3,638,155	+		GFF3594	0.58	-0.8
3,638,175	+		GFF3594	0.59	-0.3
3,638,175	+		GFF3594	0.59	+0.0
3,638,183	-		GFF3594	0.60	-2.1
3,638,193	-		GFF3594	0.61	+0.4
3,638,206	+		GFF3594	0.62	+1.0
3,638,206	+		GFF3594	0.62	+0.8
3,638,206	+		GFF3594	0.62	-0.3
3,638,206	+		GFF3594	0.62	-0.9
3,638,206	+		GFF3594	0.62	-0.3
3,638,206	+		GFF3594	0.62	-0.1
3,638,206	+		GFF3594	0.62	-0.6
3,638,206	+		GFF3594	0.62	+0.2
3,638,214	-		GFF3594	0.62	-0.2
3,638,214	-		GFF3594	0.62	-0.7
3,638,214	-		GFF3594	0.62	-1.0
3,638,214	-		GFF3594	0.62	-1.9
3,638,214	-		GFF3594	0.62	-0.7
3,638,214	-		GFF3594	0.62	+0.0
3,638,221	+		GFF3594	0.63	-1.2
3,638,242	-		GFF3594	0.64	+0.1
3,638,249	-		GFF3594	0.65	+0.8
3,638,252	-		GFF3594	0.65	-0.2
3,638,330	-		GFF3594	0.71	+0.1
3,638,363	-		GFF3594	0.73	-0.3
3,638,369	+		GFF3594	0.73	+1.0
3,638,377	-		GFF3594	0.74	+1.1
3,638,424	+		GFF3594	0.77	+0.5
3,638,432	-		GFF3594	0.78	-1.6
3,638,434	+		GFF3594	0.78	-0.9
3,638,450	-		GFF3594	0.79	+0.9
3,638,451	+		GFF3594	0.79	+0.9
3,638,453	+		GFF3594	0.79	-2.2
3,638,482	+		GFF3594	0.82	-0.1
3,638,491	-		GFF3594	0.82	-2.1
3,638,506	+		GFF3594	0.83	-1.3
3,638,514	-		GFF3594	0.84	-0.3
3,638,514	-		GFF3594	0.84	+0.4
3,638,549	-		GFF3594	0.86	-0.3
3,638,549	-		GFF3594	0.86	-0.5
3,638,663	-				+1.1
3,638,671	+				+0.3
3,638,679	-				-0.6
3,638,687	-				+0.2
3,638,691	-				+1.2
3,638,723	+				+0.2
3,638,726	+				+0.7
3,638,726	+				-0.5
3,638,731	+				+0.2
3,638,733	+				-0.6
3,638,733	-				+0.1
3,638,741	-				-0.4
3,638,787	-				-0.8
3,638,806	+				+1.4
3,638,852	+		GFF3595	0.11	+0.4
3,638,856	+		GFF3595	0.11	+0.2
3,638,862	+		GFF3595	0.12	-2.1
3,638,866	-		GFF3595	0.12	-1.0
3,638,870	+		GFF3595	0.12	-0.8
3,638,870	-		GFF3595	0.12	+0.0
3,638,870	-		GFF3595	0.12	-1.0
3,638,883	-		GFF3595	0.14	+0.1
3,638,883	-		GFF3595	0.14	+0.3
3,638,917	+		GFF3595	0.17	+1.0
3,638,925	-		GFF3595	0.18	-1.8
3,638,933	+		GFF3595	0.18	+1.4
3,638,933	+		GFF3595	0.18	+0.6
3,638,933	+		GFF3595	0.18	-2.0
3,638,940	-		GFF3595	0.19	+0.8
3,638,941	-		GFF3595	0.19	-1.5
3,638,941	-		GFF3595	0.19	-0.7
3,638,941	-		GFF3595	0.19	+0.4
3,638,953	-		GFF3595	0.20	+1.0
3,638,953	-		GFF3595	0.20	+0.1
3,638,953	-		GFF3595	0.20	-1.5
3,638,963	-		GFF3595	0.21	+0.4
3,638,965	-		GFF3595	0.21	+0.2
3,638,973	-		GFF3595	0.22	-1.4
3,638,993	+		GFF3595	0.24	+0.3
3,639,000	-		GFF3595	0.25	-0.2
3,639,001	-		GFF3595	0.25	+0.2
3,639,001	-		GFF3595	0.25	+0.2
3,639,008	+		GFF3595	0.25	-1.3
3,639,008	+		GFF3595	0.25	+0.4
3,639,016	-		GFF3595	0.26	-0.8
3,639,016	-		GFF3595	0.26	-0.4
3,639,016	-		GFF3595	0.26	-0.0
3,639,016	-		GFF3595	0.26	-0.1
3,639,016	-		GFF3595	0.26	-1.3
3,639,016	-		GFF3595	0.26	-1.3
3,639,018	-		GFF3595	0.26	-1.8
3,639,021	+		GFF3595	0.27	-0.1
3,639,054	-		GFF3595	0.30	+0.1
3,639,105	+		GFF3595	0.35	-1.0
3,639,105	+		GFF3595	0.35	+1.4
3,639,113	-		GFF3595	0.35	-1.8
3,639,113	-		GFF3595	0.35	-1.3
3,639,123	-		GFF3595	0.36	-0.8
3,639,151	+		GFF3595	0.39	-0.4
3,639,182	-		GFF3595	0.42	+0.3
3,639,187	-		GFF3595	0.42	+0.1
3,639,212	-		GFF3595	0.45	-0.2
3,639,227	-		GFF3595	0.46	-0.5
3,639,238	-		GFF3595	0.47	-0.8
3,639,243	-		GFF3595	0.48	+0.9
3,639,256	+		GFF3595	0.49	+1.8
3,639,256	+		GFF3595	0.49	-0.2
3,639,256	+		GFF3595	0.49	-0.2
3,639,266	+		GFF3595	0.50	-0.2
3,639,266	+		GFF3595	0.50	-1.6
3,639,266	+		GFF3595	0.50	+1.4
3,639,266	+		GFF3595	0.50	+0.4
3,639,266	+		GFF3595	0.50	-0.5
3,639,266	+		GFF3595	0.50	-2.9
3,639,274	-		GFF3595	0.51	+0.8
3,639,274	-		GFF3595	0.51	-1.8
3,639,274	-		GFF3595	0.51	-0.7
3,639,274	-		GFF3595	0.51	-0.5
3,639,274	-		GFF3595	0.51	-0.1
3,639,274	-		GFF3595	0.51	-0.7
3,639,336	-		GFF3595	0.57	+1.1
3,639,340	+		GFF3595	0.57	+0.3
3,639,347	+		GFF3595	0.58	+0.1
3,639,347	+		GFF3595	0.58	+1.5
3,639,347	+		GFF3595	0.58	+0.0
3,639,348	-		GFF3595	0.58	-1.4
3,639,355	-		GFF3595	0.58	-1.8
3,639,355	-		GFF3595	0.58	-0.4
3,639,357	+		GFF3595	0.59	-1.9
3,639,413	-		GFF3595	0.64	+0.0
3,639,416	+		GFF3595	0.64	-0.6
3,639,416	+		GFF3595	0.64	-0.6
3,639,416	+		GFF3595	0.64	-0.7
3,639,416	+		GFF3595	0.64	-1.6
3,639,424	-		GFF3595	0.65	-0.4
3,639,424	-		GFF3595	0.65	+0.5
3,639,424	-		GFF3595	0.65	-0.3
3,639,424	-		GFF3595	0.65	+0.3
3,639,434	-		GFF3595	0.66	-1.7
3,639,470	+		GFF3595	0.69	-0.2
3,639,478	-		GFF3595	0.70	-1.6
3,639,485	-		GFF3595	0.71	-0.1
3,639,487	+		GFF3595	0.71	-1.8
3,639,487	+		GFF3595	0.71	-0.2
3,639,495	-		GFF3595	0.72	+0.2
3,639,495	-		GFF3595	0.72	-0.6
3,639,495	-		GFF3595	0.72	-1.5
3,639,495	-		GFF3595	0.72	-1.3
3,639,495	-		GFF3595	0.72	-1.0
3,639,500	-		GFF3595	0.72	-0.2
3,639,520	-		GFF3595	0.74	-0.4
3,639,523	+		GFF3595	0.74	-0.3
3,639,536	-		GFF3595	0.76	+0.1
3,639,539	-		GFF3595	0.76	-1.0
3,639,545	+		GFF3595	0.76	-1.5
3,639,545	+		GFF3595	0.76	-0.9
3,639,550	+		GFF3595	0.77	-0.3
3,639,553	-		GFF3595	0.77	-1.7
3,639,626	-		GFF3595	0.84	-1.7
3,639,633	+		GFF3595	0.85	-0.6
3,639,651	+		GFF3595	0.87	+0.2
3,639,654	-		GFF3595	0.87	-0.1
3,639,661	+		GFF3595	0.87	-0.3
3,639,670	+		GFF3595	0.88	-0.7
3,639,702	-				+0.2