Strain Fitness in Sphingobium sp. HT1-2 around GFF3587

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,630,589	+				+0.3
3,630,615	+				-0.1
3,630,615	+				+0.3
3,630,615	+				+0.4
3,630,615	+				+1.9
3,630,615	+				-2.2
3,630,615	+				-1.2
3,630,623	-				-0.4
3,630,635	+				-0.3
3,630,643	+				-0.3
3,630,644	-				-2.3
3,630,644	-				+1.1
3,630,644	-				-1.7
3,630,651	-				-1.3
3,630,706	-				+0.3
3,630,706	-				+1.3
3,630,708	-				-0.3
3,630,708	-				+1.3
3,630,713	-				-2.7
3,630,752	-				+1.6
3,630,771	+				+0.8
3,630,788	+		GFF3585	0.11	+0.4
3,630,796	-		GFF3585	0.12	-0.7
3,630,846	+		GFF3585	0.19	-1.1
3,630,846	+		GFF3585	0.19	-1.2
3,630,857	+		GFF3585	0.21	-1.8
3,630,910	-		GFF3585	0.29	-1.0
3,630,955	-		GFF3585	0.36	+0.3
3,630,957	+		GFF3585	0.36	-2.2
3,630,957	+		GFF3585	0.36	-0.7
3,630,957	+		GFF3585	0.36	+0.9
3,630,965	-		GFF3585	0.37	+0.4
3,630,966	-		GFF3585	0.37	+0.3
3,630,966	-		GFF3585	0.37	+0.0
3,631,005	-		GFF3585	0.43	+0.1
3,631,038	+		GFF3585	0.48	+0.7
3,631,038	+		GFF3585	0.48	-0.1
3,631,043	+		GFF3585	0.49	+0.3
3,631,046	-		GFF3585	0.49	+0.5
3,631,046	-		GFF3585	0.49	+0.4
3,631,065	-		GFF3585	0.52	-0.2
3,631,084	-		GFF3585	0.55	+0.1
3,631,086	+		GFF3585	0.55	+0.2
3,631,088	-		GFF3585	0.56	+0.3
3,631,094	-		GFF3585	0.56	+0.4
3,631,105	-		GFF3585	0.58	-1.1
3,631,110	+		GFF3585	0.59	-1.3
3,631,123	-		GFF3585	0.61	-1.4
3,631,123	-		GFF3585	0.61	+0.6
3,631,123	-		GFF3585	0.61	-1.7
3,631,127	+		GFF3585	0.61	-1.5
3,631,127	+		GFF3585	0.61	+1.3
3,631,127	+		GFF3585	0.61	+1.6
3,631,127	+		GFF3585	0.61	+0.4
3,631,127	+		GFF3585	0.61	+0.9
3,631,127	+		GFF3585	0.61	+0.9
3,631,127	+		GFF3585	0.61	-1.7
3,631,127	+		GFF3585	0.61	+1.7
3,631,127	+		GFF3585	0.61	-0.3
3,631,127	+		GFF3585	0.61	-0.1
3,631,127	+		GFF3585	0.61	-0.6
3,631,128	-		GFF3585	0.61	-2.2
3,631,135	-		GFF3585	0.62	+0.4
3,631,135	-		GFF3585	0.62	-0.3
3,631,135	-		GFF3585	0.62	+0.4
3,631,135	-		GFF3585	0.62	-0.7
3,631,135	-		GFF3585	0.62	+1.0
3,631,135	-		GFF3585	0.62	+0.1
3,631,135	-		GFF3585	0.62	-1.4
3,631,135	-		GFF3585	0.62	-0.7
3,631,135	-		GFF3585	0.62	+1.5
3,631,135	-		GFF3585	0.62	-0.0
3,631,135	-		GFF3585	0.62	-0.8
3,631,135	-		GFF3585	0.62	-1.9
3,631,135	-		GFF3585	0.62	-2.2
3,631,135	-		GFF3585	0.62	-0.1
3,631,140	-		GFF3585	0.63	+1.5
3,631,141	+		GFF3585	0.63	-0.5
3,631,146	+		GFF3585	0.64	+0.1
3,631,146	+		GFF3585	0.64	-1.4
3,631,164	+		GFF3585	0.67	-1.3
3,631,164	+		GFF3585	0.67	+0.8
3,631,164	+		GFF3585	0.67	+0.2
3,631,169	-		GFF3585	0.68	+0.8
3,631,170	+		GFF3585	0.68	-2.1
3,631,170	+		GFF3585	0.68	+1.1
3,631,172	-		GFF3585	0.68	-1.1
3,631,179	+		GFF3585	0.69	+1.1
3,631,179	+		GFF3585	0.69	+0.4
3,631,187	-		GFF3585	0.70	-0.3
3,631,187	-		GFF3585	0.70	+0.8
3,631,212	+		GFF3585	0.74	+0.3
3,631,212	+		GFF3585	0.74	-0.2
3,631,212	+		GFF3585	0.74	+1.7
3,631,212	+		GFF3585	0.74	-0.3
3,631,212	+		GFF3585	0.74	-0.4
3,631,212	+		GFF3585	0.74	-0.4
3,631,212	+		GFF3585	0.74	-0.4
3,631,212	+		GFF3585	0.74	-1.2
3,631,212	+		GFF3585	0.74	-1.7
3,631,212	+		GFF3585	0.74	-0.9
3,631,220	-		GFF3585	0.75	-1.9
3,631,220	-		GFF3585	0.75	+1.3
3,631,220	-		GFF3585	0.75	-1.3
3,631,270	+		GFF3585	0.83	-2.1
3,631,275	+		GFF3585	0.83	+1.4
3,631,283	-		GFF3585	0.85	+0.9
3,631,283	-		GFF3585	0.85	-0.3
3,631,287	+		GFF3585	0.85	-0.7
3,631,287	+		GFF3585	0.85	-0.3
3,631,287	+		GFF3585	0.85	-0.4
3,631,290	-		GFF3585	0.86	-0.1
3,631,295	+		GFF3585	0.86	+1.1
3,631,295	-		GFF3585	0.86	-1.3
3,631,295	-		GFF3585	0.86	-0.4
3,631,295	-		GFF3585	0.86	-1.2
3,631,302	-		GFF3585	0.87	-0.8
3,631,303	-		GFF3585	0.88	-0.9
3,631,303	-		GFF3585	0.88	+0.1
3,631,305	-		GFF3585	0.88	-0.7
3,631,328	+				+0.1
3,631,336	-				+0.0
3,631,343	-				-1.4
3,631,343	-				-0.4
3,631,355	+				+0.9
3,631,359	+				+0.3
3,631,363	-				-0.4
3,631,363	-				-1.1
3,631,364	+				-0.7
3,631,380	+				+1.4
3,631,380	+				-1.3
3,631,380	+				-0.6
3,631,380	+				+1.7
3,631,380	+				-1.0
3,631,380	+				-0.7
3,631,388	-				-0.6
3,631,388	-				+0.5
3,631,388	-				+0.4
3,631,388	-				+0.1
3,631,407	+				-0.9
3,631,415	-		GFF3586	0.10	-1.2
3,631,487	+		GFF3586	0.53	-0.6
3,631,518	+		GFF3586	0.71	-0.6
3,631,518	+		GFF3586	0.71	-2.1
3,631,518	+		GFF3586	0.71	+1.1
3,631,531	-		GFF3586	0.79	-0.3
3,631,536	-		GFF3586	0.82	-0.1
3,631,630	+		GFF3587	0.11	-0.3
3,631,630	+		GFF3587	0.11	-0.6
3,631,630	+		GFF3587	0.11	-1.2
3,631,630	+		GFF3587	0.11	+0.1
3,631,630	+		GFF3587	0.11	-2.7
3,631,630	+		GFF3587	0.11	-0.2
3,631,638	-		GFF3587	0.13	+0.3
3,631,638	-		GFF3587	0.13	+0.4
3,631,638	-		GFF3587	0.13	+0.3
3,631,638	-		GFF3587	0.13	-1.3
3,631,666	+		GFF3587	0.20	-1.2
3,631,685	-		GFF3587	0.24	-0.2
3,631,694	+		GFF3587	0.26	+1.1
3,631,694	+		GFF3587	0.26	-0.1
3,631,694	+		GFF3587	0.26	-0.5
3,631,694	+		GFF3587	0.26	+0.1
3,631,695	-		GFF3587	0.27	-0.2
3,631,702	-		GFF3587	0.28	-0.3
3,631,702	-		GFF3587	0.28	-1.8
3,631,702	-		GFF3587	0.28	+1.3
3,631,702	-		GFF3587	0.28	-0.1
3,631,709	+		GFF3587	0.30	-0.3
3,631,709	+		GFF3587	0.30	+0.7
3,631,709	+		GFF3587	0.30	-0.5
3,631,709	+		GFF3587	0.30	+0.1
3,631,714	+		GFF3587	0.31	-0.9
3,631,717	-		GFF3587	0.32	-0.4
3,631,717	-		GFF3587	0.32	+1.5
3,631,736	+		GFF3587	0.37	-0.2
3,631,759	-		GFF3587	0.42	+0.1
3,631,770	+		GFF3587	0.45	-0.5
3,631,770	+		GFF3587	0.45	-0.4
3,631,770	+		GFF3587	0.45	+1.6
3,631,770	+		GFF3587	0.45	+0.0
3,631,778	-		GFF3587	0.47	-0.6
3,631,837	-		GFF3587	0.62	-1.5
3,631,837	-		GFF3587	0.62	+1.9
3,631,837	-		GFF3587	0.62	-0.9
3,631,845	-		GFF3587	0.64	-0.3
3,631,852	+		GFF3587	0.65	+0.2
3,631,852	+		GFF3587	0.65	-2.0
3,631,854	-		GFF3587	0.66	-1.4
3,631,857	+		GFF3587	0.67	-0.4
3,631,857	+		GFF3587	0.67	+0.3
3,631,857	+		GFF3587	0.67	-1.1
3,631,857	+		GFF3587	0.67	+0.2
3,631,857	+		GFF3587	0.67	-1.7
3,631,857	+		GFF3587	0.67	-0.5
3,631,857	+		GFF3587	0.67	-0.7
3,631,857	+		GFF3587	0.67	+1.3
3,631,857	+		GFF3587	0.67	+0.2
3,631,857	+		GFF3587	0.67	-1.6
3,631,858	+		GFF3587	0.67	+0.2
3,631,860	-		GFF3587	0.67	-2.6
3,631,863	+		GFF3587	0.68	-0.0
3,631,865	-		GFF3587	0.69	+1.1
3,631,865	-		GFF3587	0.69	-0.1
3,631,865	-		GFF3587	0.69	-0.2
3,631,865	-		GFF3587	0.69	+0.7
3,631,865	-		GFF3587	0.69	-0.1
3,631,865	-		GFF3587	0.69	-0.0
3,631,865	-		GFF3587	0.69	+0.3
3,631,865	-		GFF3587	0.69	-1.7
3,631,865	-		GFF3587	0.69	+0.6
3,631,865	-		GFF3587	0.69	+0.8
3,631,865	-		GFF3587	0.69	-0.2
3,631,865	-		GFF3587	0.69	-0.4
3,631,865	-		GFF3587	0.69	-0.1
3,631,865	-		GFF3587	0.69	+0.1
3,631,893	+		GFF3587	0.76	-0.4
3,631,898	+		GFF3587	0.77	-1.0
3,631,924	+		GFF3587	0.83	-0.4
3,631,932	+		GFF3587	0.85	-1.4
3,631,932	+		GFF3587	0.85	-1.1
3,631,932	+		GFF3587	0.85	+1.1
3,631,940	-		GFF3587	0.87	-0.4
3,631,975	-				-0.7
3,631,978	+				-0.7
3,631,984	+				-1.7
3,631,984	+				-0.9
3,631,984	+				-0.3
3,631,992	-				-1.3
3,631,992	-				+0.8
3,631,992	-				+0.3
3,631,994	-				+0.2
3,632,043	-				+0.3
3,632,043	-				-0.1
3,632,047	+				-0.2
3,632,065	+				-0.7
3,632,073	-				-0.8
3,632,073	-				-1.2
3,632,102	+				+0.1
3,632,107	-				-0.1
3,632,114	+				-1.7
3,632,125	-				-1.3
3,632,129	+				-0.0
3,632,133	-				-0.1
3,632,140	+				-0.9
3,632,144	+				-0.1
3,632,144	+				-0.0
3,632,144	+				-0.2
3,632,159	+				+0.5
3,632,164	+				-1.8
3,632,164	+				-0.7
3,632,172	-				-0.0
3,632,191	+				-0.7
3,632,199	-				+0.8
3,632,203	+				-1.7
3,632,214	+				+0.3
3,632,216	+				+1.0
3,632,216	+				-1.4
3,632,216	+				-1.6
3,632,216	+				-1.4
3,632,222	-				+1.1
3,632,223	+				-1.0
3,632,224	-				+0.3
3,632,224	-				+0.7
3,632,224	-				-0.3
3,632,224	-				+0.9
3,632,224	-				+1.0
3,632,224	-				-0.5
3,632,224	-				+0.7
3,632,228	+				+0.1
3,632,235	+				+0.8
3,632,235	+				-0.1
3,632,235	+				+0.1
3,632,243	-				+0.5
3,632,243	-				-0.1
3,632,243	-				+0.7
3,632,290	+				+0.2
3,632,290	+				-1.5
3,632,290	+				-0.2
3,632,290	+				+0.4
3,632,290	+				-1.2
3,632,290	+				+1.1
3,632,298	-				-0.0
3,632,298	-				-0.2
3,632,298	-				-1.3
3,632,298	-				+0.1
3,632,298	-				+0.3
3,632,298	-				-0.5
3,632,298	-				-0.1
3,632,340	-				+0.9
3,632,341	-				-1.8
3,632,341	-				+0.5
3,632,345	+				-0.2
3,632,345	+				+0.6
3,632,352	-				-1.1
3,632,353	-				+0.7
3,632,353	-				+0.9
3,632,464	+				-1.6
3,632,472	-				-1.0
3,632,482	-				+1.1
3,632,486	+				-0.5
3,632,486	+				-1.7
3,632,492	-		GFF3588	0.10	+0.4
3,632,515	+		GFF3588	0.17	-1.1
3,632,525	+		GFF3588	0.20	+0.4
3,632,553	+		GFF3588	0.28	+0.3
3,632,579	+		GFF3588	0.36	+0.6
3,632,593	+		GFF3588	0.40	+1.1
3,632,598	+		GFF3588	0.42	-0.4
3,632,598	+		GFF3588	0.42	-0.8
3,632,601	-		GFF3588	0.42	+0.8
3,632,601	-		GFF3588	0.42	-0.9
3,632,603	+		GFF3588	0.43	-0.9
3,632,611	-		GFF3588	0.45	+0.6
3,632,615	+		GFF3588	0.47	-0.1
3,632,616	+		GFF3588	0.47	-1.7
3,632,623	-		GFF3588	0.49	+0.1
3,632,623	-		GFF3588	0.49	+0.2
3,632,623	-		GFF3588	0.49	+0.1
3,632,623	-		GFF3588	0.49	+0.2
3,632,624	-		GFF3588	0.49	+0.3
3,632,626	+		GFF3588	0.50	-0.6
3,632,634	-		GFF3588	0.52	-0.3
3,632,634	-		GFF3588	0.52	-0.2
3,632,637	+		GFF3588	0.53	-0.2
3,632,637	+		GFF3588	0.53	-0.5
3,632,642	+		GFF3588	0.55	-0.0
3,632,642	+		GFF3588	0.55	-0.3
3,632,645	-		GFF3588	0.55	-1.9
3,632,649	-		GFF3588	0.57	-2.4
3,632,655	-		GFF3588	0.58	+0.5
3,632,655	-		GFF3588	0.58	-0.3
3,632,657	-		GFF3588	0.59	-0.3
3,632,664	+		GFF3588	0.61	-0.1
3,632,672	+		GFF3588	0.63	+0.4
3,632,680	-		GFF3588	0.66	-0.2
3,632,703	-		GFF3588	0.73	-1.9
3,632,711	+		GFF3588	0.75	+0.6
3,632,718	+		GFF3588	0.77	+0.7
3,632,719	-		GFF3588	0.77	+0.5
3,632,726	+		GFF3588	0.79	-2.3
3,632,726	-		GFF3588	0.79	-0.3
3,632,735	+		GFF3588	0.82	+0.9
3,632,735	+		GFF3588	0.82	-1.4
3,632,743	-		GFF3588	0.84	-0.3
3,632,775	-				+0.8
3,632,775	-				-0.6
3,632,804	+				-1.4
3,632,809	-				+0.6
3,632,830	+				-1.4
3,632,830	+				+0.1
3,632,837	+		GFF3589	0.12	-0.2
3,632,837	+		GFF3589	0.12	+0.3
3,632,837	+		GFF3589	0.12	+1.0
3,632,837	+		GFF3589	0.12	+0.4
3,632,837	+		GFF3589	0.12	+0.1
3,632,837	+		GFF3589	0.12	-1.6
3,632,837	+		GFF3589	0.12	-0.9
3,632,843	-		GFF3589	0.14	-0.4
3,632,845	-		GFF3589	0.15	-1.1
3,632,845	-		GFF3589	0.15	-0.7
3,632,845	-		GFF3589	0.15	-0.5
3,632,845	-		GFF3589	0.15	-3.0
3,632,845	-		GFF3589	0.15	-0.3
3,632,845	-		GFF3589	0.15	+0.3
3,632,845	-		GFF3589	0.15	-0.7
3,632,845	-		GFF3589	0.15	+0.1
3,632,845	-		GFF3589	0.15	-0.4
3,632,855	+		GFF3589	0.19	-2.1
3,632,861	+		GFF3589	0.21	-2.0
3,632,882	+		GFF3589	0.29	-0.7
3,632,890	-		GFF3589	0.31	-0.3
3,632,898	+		GFF3589	0.34	-1.3
3,632,898	+		GFF3589	0.34	-1.6
3,632,898	+		GFF3589	0.34	-0.4
3,632,898	+		GFF3589	0.34	+1.7
3,632,898	+		GFF3589	0.34	-0.6
3,632,906	-		GFF3589	0.37	-1.7
3,632,906	-		GFF3589	0.37	+0.4
3,632,906	-		GFF3589	0.37	+0.0
3,632,906	-		GFF3589	0.37	-1.8
3,632,906	-		GFF3589	0.37	+0.3
3,632,906	-		GFF3589	0.37	-1.4
3,632,906	-		GFF3589	0.37	-0.1
3,632,906	-		GFF3589	0.37	-0.8
3,632,906	-		GFF3589	0.37	-1.2
3,632,906	-		GFF3589	0.37	+0.1
3,632,906	-		GFF3589	0.37	+0.4
3,632,908	+		GFF3589	0.38	-1.3
3,632,924	+		GFF3589	0.44	+0.1
3,632,941	+		GFF3589	0.50	-0.3
3,632,945	+		GFF3589	0.52	+0.1
3,632,952	+		GFF3589	0.54	+0.0
3,632,952	+		GFF3589	0.54	+0.7
3,632,953	-		GFF3589	0.55	-0.3
3,632,953	-		GFF3589	0.55	+0.7
3,632,954	-		GFF3589	0.55	-0.0
3,632,954	-		GFF3589	0.55	+1.6
3,632,954	-		GFF3589	0.55	+1.7