Strain Fitness in Sphingobium sp. HT1-2 around GFF3578

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,624,359	+				-2.2
3,624,359	+				+0.9
3,624,367	-				-0.5
3,624,367	-				+0.2
3,624,367	-				-1.3
3,624,367	-				-2.1
3,624,399	+				-1.3
3,624,399	+				+0.6
3,624,399	+				-2.1
3,624,402	-				-0.4
3,624,407	-				-0.4
3,624,407	-				-2.4
3,624,423	+				-0.1
3,624,431	-		GFF3576	0.10	+0.8
3,624,431	-		GFF3576	0.10	+0.8
3,624,455	+		GFF3576	0.14	-0.3
3,624,463	+		GFF3576	0.15	+0.8
3,624,465	+		GFF3576	0.16	+0.1
3,624,473	-		GFF3576	0.17	-0.8
3,624,482	+		GFF3576	0.19	-1.4
3,624,489	+		GFF3576	0.20	-1.7
3,624,489	+		GFF3576	0.20	-0.3
3,624,496	+		GFF3576	0.21	-1.3
3,624,497	-		GFF3576	0.21	-1.4
3,624,497	-		GFF3576	0.21	-0.1
3,624,497	-		GFF3576	0.21	+0.4
3,624,501	+		GFF3576	0.22	-0.2
3,624,504	-		GFF3576	0.22	+0.3
3,624,504	-		GFF3576	0.22	-3.0
3,624,504	-		GFF3576	0.22	+0.6
3,624,506	+		GFF3576	0.23	+1.4
3,624,506	+		GFF3576	0.23	-0.1
3,624,506	+		GFF3576	0.23	-0.6
3,624,509	-		GFF3576	0.23	-0.2
3,624,509	-		GFF3576	0.23	-0.8
3,624,509	-		GFF3576	0.23	+0.6
3,624,510	+		GFF3576	0.23	+0.3
3,624,514	-		GFF3576	0.24	+0.7
3,624,514	-		GFF3576	0.24	+0.1
3,624,517	-		GFF3576	0.25	-1.1
3,624,523	+		GFF3576	0.26	+0.1
3,624,539	+		GFF3576	0.28	-2.6
3,624,539	+		GFF3576	0.28	-0.8
3,624,544	+		GFF3576	0.29	-1.4
3,624,544	+		GFF3576	0.29	-0.3
3,624,544	+		GFF3576	0.29	-1.6
3,624,544	+		GFF3576	0.29	+1.0
3,624,544	+		GFF3576	0.29	+0.6
3,624,544	+		GFF3576	0.29	-0.9
3,624,544	+		GFF3576	0.29	+0.7
3,624,546	+		GFF3576	0.29	-0.9
3,624,546	+		GFF3576	0.29	-1.2
3,624,552	-		GFF3576	0.30	+0.9
3,624,552	-		GFF3576	0.30	-0.1
3,624,552	-		GFF3576	0.30	-0.7
3,624,552	-		GFF3576	0.30	-1.8
3,624,552	-		GFF3576	0.30	-0.7
3,624,554	-		GFF3576	0.31	-0.8
3,624,554	-		GFF3576	0.31	+0.1
3,624,609	+		GFF3576	0.40	-0.2
3,624,620	+		GFF3576	0.42	+0.0
3,624,626	+		GFF3576	0.43	+1.2
3,624,628	+		GFF3576	0.43	+0.7
3,624,628	+		GFF3576	0.43	-0.9
3,624,628	+		GFF3576	0.43	-1.3
3,624,628	+		GFF3576	0.43	-0.8
3,624,628	+		GFF3576	0.43	-0.4
3,624,628	+		GFF3576	0.43	+0.3
3,624,628	-		GFF3576	0.43	+1.3
3,624,636	-		GFF3576	0.45	+0.8
3,624,636	-		GFF3576	0.45	+1.2
3,624,636	-		GFF3576	0.45	+1.4
3,624,636	-		GFF3576	0.45	+0.6
3,624,663	-		GFF3576	0.49	-1.4
3,624,690	+		GFF3576	0.54	+1.0
3,624,690	+		GFF3576	0.54	-0.3
3,624,690	-		GFF3576	0.54	-2.0
3,624,691	+		GFF3576	0.54	-1.2
3,624,721	+		GFF3576	0.59	-1.6
3,624,736	+		GFF3576	0.62	-1.7
3,624,736	+		GFF3576	0.62	+1.2
3,624,740	+		GFF3576	0.62	-1.3
3,624,741	+		GFF3576	0.62	-1.9
3,624,754	-		GFF3576	0.65	-1.6
3,624,756	-		GFF3576	0.65	-0.1
3,624,767	+		GFF3576	0.67	-1.7
3,624,772	-		GFF3576	0.68	-1.5
3,624,780	+		GFF3576	0.69	-0.8
3,624,780	-		GFF3576	0.69	+0.1
3,624,799	-		GFF3576	0.72	-0.2
3,624,811	-		GFF3576	0.74	+0.5
3,624,826	+		GFF3576	0.77	-0.3
3,624,829	-		GFF3576	0.77	+0.6
3,624,836	+		GFF3576	0.79	-0.4
3,624,854	-		GFF3576	0.82	-1.1
3,624,872	+		GFF3576	0.85	-2.0
3,624,885	-		GFF3576	0.87	-1.2
3,624,885	-		GFF3576	0.87	-1.7
3,624,885	-		GFF3576	0.87	-0.3
3,624,887	+		GFF3576	0.87	-0.7
3,624,895	-		GFF3576	0.88	-0.8
3,624,895	-		GFF3576	0.88	+0.9
3,624,909	-				+1.4
3,624,913	-				-1.6
3,624,925	+				-1.6
3,624,934	-				-0.7
3,624,937	+				-1.1
3,624,940	-				+0.7
3,624,940	-				+1.1
3,624,940	-				-1.6
3,624,969	+				-1.6
3,624,977	-				+1.5
3,624,977	-				-0.2
3,625,024	-		GFF3577	0.18	+1.3
3,625,031	+		GFF3577	0.20	+0.5
3,625,044	-		GFF3577	0.24	+0.9
3,625,049	-		GFF3577	0.25	-0.1
3,625,055	+		GFF3577	0.27	-0.4
3,625,055	+		GFF3577	0.27	-0.3
3,625,063	-		GFF3577	0.29	-1.6
3,625,063	-		GFF3577	0.29	+1.7
3,625,073	-		GFF3577	0.32	+0.6
3,625,084	+		GFF3577	0.35	-1.6
3,625,087	-		GFF3577	0.36	+0.1
3,625,089	+		GFF3577	0.37	-0.3
3,625,089	+		GFF3577	0.37	-0.0
3,625,089	+		GFF3577	0.37	+0.0
3,625,089	+		GFF3577	0.37	-0.7
3,625,089	+		GFF3577	0.37	+1.2
3,625,089	+		GFF3577	0.37	-2.0
3,625,089	+		GFF3577	0.37	+0.4
3,625,089	+		GFF3577	0.37	+1.0
3,625,089	+		GFF3577	0.37	+0.9
3,625,089	+		GFF3577	0.37	+0.2
3,625,089	+		GFF3577	0.37	+0.5
3,625,089	+		GFF3577	0.37	+0.3
3,625,089	+		GFF3577	0.37	-1.6
3,625,097	-		GFF3577	0.39	-0.4
3,625,097	-		GFF3577	0.39	-1.2
3,625,097	-		GFF3577	0.39	+1.3
3,625,097	-		GFF3577	0.39	+0.2
3,625,097	-		GFF3577	0.39	-1.4
3,625,097	-		GFF3577	0.39	-0.2
3,625,097	-		GFF3577	0.39	-0.6
3,625,142	+		GFF3577	0.52	-1.4
3,625,142	-		GFF3577	0.52	+0.6
3,625,191	-		GFF3577	0.66	+0.1
3,625,193	+		GFF3577	0.66	-1.6
3,625,193	+		GFF3577	0.66	+0.6
3,625,193	+		GFF3577	0.66	-1.4
3,625,201	-		GFF3577	0.68	+0.4
3,625,201	-		GFF3577	0.68	+0.5
3,625,201	-		GFF3577	0.68	+0.3
3,625,201	-		GFF3577	0.68	-1.9
3,625,202	+		GFF3577	0.69	-1.5
3,625,202	+		GFF3577	0.69	+0.4
3,625,207	+		GFF3577	0.70	-1.7
3,625,210	-		GFF3577	0.71	+0.7
3,625,215	-		GFF3577	0.72	-1.7
3,625,254	-		GFF3577	0.83	-2.3
3,625,271	-		GFF3577	0.88	-0.8
3,625,271	-		GFF3577	0.88	-1.8
3,625,271	-		GFF3577	0.88	+0.3
3,625,271	-		GFF3577	0.88	-1.4
3,625,293	+				-1.6
3,625,312	+				+0.4
3,625,312	+				-1.4
3,625,320	-				-0.6
3,625,320	-				+0.4
3,625,320	-				-0.6
3,625,322	+				-0.9
3,625,327	-				+0.0
3,625,330	-				-0.4
3,625,331	+				-1.7
3,625,331	+				+0.5
3,625,336	+				-0.2
3,625,339	-				-0.1
3,625,344	-		GFF3578	0.10	-1.3
3,625,353	-		GFF3578	0.13	-1.1
3,625,382	-		GFF3578	0.21	-2.3
3,625,384	+		GFF3578	0.21	+0.8
3,625,391	+		GFF3578	0.23	-0.1
3,625,391	+		GFF3578	0.23	+1.1
3,625,391	+		GFF3578	0.23	+0.3
3,625,396	+		GFF3578	0.25	+0.5
3,625,399	-		GFF3578	0.26	+0.8
3,625,399	-		GFF3578	0.26	-1.2
3,625,399	-		GFF3578	0.26	+1.4
3,625,401	+		GFF3578	0.26	+0.5
3,625,406	+		GFF3578	0.28	+0.4
3,625,436	+		GFF3578	0.36	-2.0
3,625,436	+		GFF3578	0.36	+0.4
3,625,436	+		GFF3578	0.36	+0.9
3,625,436	+		GFF3578	0.36	-1.4
3,625,551	+		GFF3578	0.69	+0.0
3,625,556	+		GFF3578	0.70	-0.0
3,625,556	+		GFF3578	0.70	+1.0
3,625,556	+		GFF3578	0.70	-2.0
3,625,564	-		GFF3578	0.73	+0.4
3,625,568	+		GFF3578	0.74	-1.7
3,625,568	+		GFF3578	0.74	-1.2
3,625,576	-		GFF3578	0.76	-1.3
3,625,583	-		GFF3578	0.78	+0.8
3,625,590	+		GFF3578	0.80	+0.4
3,625,598	-		GFF3578	0.82	-2.0
3,625,671	+				-0.7
3,625,706	-				+0.5
3,625,706	-				-1.0
3,625,706	-				+0.1
3,625,716	+				-0.2
3,625,716	+				-0.1
3,625,716	+				-0.7
3,625,720	-				+0.7
3,625,734	+				-2.4
3,625,753	-				-2.4
3,625,760	+				-1.0
3,625,809	+				+0.0
3,625,875	-				-1.6
3,625,965	-				+0.7
3,625,977	-				-2.0
3,626,003	-				-0.9
3,626,018	-				+0.0
3,626,093	-				-0.2
3,626,095	+				-1.1
3,626,101	-				+0.7
3,626,110	-				+0.4
3,626,115	-				-0.2
3,626,153	-				-0.4
3,626,170	-				+1.0
3,626,179	+				-0.6
3,626,179	+				-1.0
3,626,179	+				-1.8
3,626,179	+				-1.1
3,626,179	+				-0.2
3,626,179	+				-0.4
3,626,179	+				-2.7
3,626,179	+				+1.0
3,626,179	+				+0.4
3,626,179	+				+1.1
3,626,186	+				+0.8
3,626,186	+				-1.2
3,626,187	-				-1.2
3,626,187	-				+1.7
3,626,187	-				-1.7
3,626,187	-				-2.7
3,626,187	-				-1.6
3,626,187	-				-0.2
3,626,187	-				-0.2
3,626,187	-				-1.7
3,626,187	-				+1.4
3,626,187	-				+1.1
3,626,187	-				-0.1
3,626,187	-				-1.1
3,626,187	-				+0.7
3,626,187	-				+0.8
3,626,194	-				-0.5
3,626,194	-				-1.0
3,626,194	-				-0.0
3,626,194	-				+0.1
3,626,194	-				-0.9
3,626,194	-				+0.8
3,626,194	-				+0.4
3,626,194	-				-0.1
3,626,195	-				+0.8
3,626,197	-				+1.1
3,626,204	-				+0.0
3,626,205	+				-1.7
3,626,205	+				+1.0
3,626,205	+				+0.1
3,626,205	-				-1.7
3,626,205	-				-1.4
3,626,205	-				+0.0
3,626,205	-				-0.6
3,626,205	-				-0.7
3,626,205	-				-0.2
3,626,207	+				-1.7
3,626,213	-				+0.2
3,626,224	-				+0.4
3,626,229	+				-1.4
3,626,229	-				-1.1
3,626,230	-				-1.4
3,626,235	+				-1.4
3,626,235	+				-1.4
3,626,236	+				-0.2
3,626,236	+				+0.4
3,626,237	+				+0.4
3,626,237	-				-1.2
3,626,237	-				-0.6
3,626,243	-				-0.6
3,626,264	+				+1.3
3,626,277	+				-0.7
3,626,285	-				-0.7
3,626,306	+				-0.4
3,626,309	-				-0.6
3,626,313	-				+1.0
3,626,316	+				-0.7
3,626,320	+				-0.9
3,626,320	+				+0.3
3,626,320	+				+0.9
3,626,320	+				-1.0
3,626,320	+				-0.2
3,626,320	+				-1.2
3,626,324	-				+0.7
3,626,328	-				+0.6
3,626,328	-				+1.6
3,626,328	-				-1.3
3,626,328	-				-0.6
3,626,328	-				-0.3
3,626,333	-				-0.1
3,626,335	+				+0.3
3,626,335	+				-0.4
3,626,335	+				-0.9
3,626,335	+				-1.1
3,626,335	+				-1.6
3,626,335	+				-2.0
3,626,335	+				+0.0
3,626,337	+				-1.7
3,626,338	-				-1.3
3,626,343	-				+0.2
3,626,343	-				+1.1
3,626,343	-				-0.2
3,626,343	-				+0.0
3,626,343	-				+1.6
3,626,343	-				+0.0
3,626,343	-				+0.9
3,626,343	-				+0.2
3,626,343	-				-0.0
3,626,343	-				-1.3
3,626,343	-				+1.7
3,626,343	-				-0.3
3,626,343	-				-0.8
3,626,343	-				-0.9
3,626,343	-				-0.1
3,626,345	+				+1.0
3,626,353	-				-0.3
3,626,362	+				+0.8
3,626,364	+				-0.7
3,626,364	+				+0.8
3,626,364	+				+0.1
3,626,364	+				-0.1
3,626,364	+				+0.2
3,626,364	-				+1.5
3,626,364	-				+0.7
3,626,364	-				-0.9
3,626,367	+				-1.2
3,626,372	+				-0.9
3,626,372	+				+0.7
3,626,372	+				-0.4
3,626,372	-				+1.1
3,626,372	-				-0.6
3,626,372	-				+0.8
3,626,377	-				+0.3
3,626,380	+				+0.6
3,626,380	-				-1.0
3,626,380	-				+0.7
3,626,387	+				-1.1
3,626,400	+				-1.7
3,626,400	+				+0.2
3,626,400	+				-0.7
3,626,408	-				-0.7
3,626,413	+				+0.1
3,626,418	-				+0.9
3,626,421	-				-1.7
3,626,421	-				-1.3
3,626,421	-				-1.4
3,626,423	+				-1.1
3,626,436	-				-1.0
3,626,459	-				-0.1
3,626,475	-		GFF3579	0.22	-1.8
3,626,478	+		GFF3579	0.25	-1.8
3,626,484	+		GFF3579	0.30	-1.9
3,626,493	+		GFF3579	0.38	+0.4
3,626,496	+		GFF3579	0.40	-1.6
3,626,503	+		GFF3579	0.46	-1.4
3,626,511	-		GFF3579	0.53	-0.7
3,626,560	-				+0.6
3,626,574	+				-1.7
3,626,598	+				-1.3
3,626,616	-				-0.9
3,626,619	+				-1.7
3,626,627	+				-0.7
3,626,627	-				+0.3
3,626,629	+				-1.3
3,626,629	+				-0.7
3,626,637	-				+0.1
3,626,637	-				+0.2
3,626,645	-				-1.0
3,626,646	+				-0.7
3,626,651	+				+0.5
3,626,651	+				+1.1
3,626,651	+				+0.6
3,626,654	-				+1.4