Strain Fitness in Sphingobium sp. HT1-2 around GFF3544

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,591,734	+		GFF3543	0.50	+0.4
3,591,735	-		GFF3543	0.50	+0.8
3,591,741	+		GFF3543	0.50	+0.8
3,591,741	-		GFF3543	0.50	-0.6
3,591,742	-		GFF3543	0.50	+0.2
3,591,742	-		GFF3543	0.50	-0.3
3,591,742	-		GFF3543	0.50	-2.0
3,591,742	-		GFF3543	0.50	+0.6
3,591,742	-		GFF3543	0.50	-0.1
3,591,780	+		GFF3543	0.52	-0.4
3,591,787	+		GFF3543	0.53	+0.4
3,591,787	-		GFF3543	0.53	+0.1
3,591,789	+		GFF3543	0.53	-1.9
3,591,789	+		GFF3543	0.53	+1.0
3,591,789	+		GFF3543	0.53	-0.8
3,591,795	-		GFF3543	0.53	+0.4
3,591,795	-		GFF3543	0.53	+0.8
3,591,797	+		GFF3543	0.53	+0.3
3,591,802	+		GFF3543	0.53	-0.0
3,591,805	-		GFF3543	0.54	+1.5
3,591,805	-		GFF3543	0.54	+0.6
3,591,805	-		GFF3543	0.54	-0.9
3,591,825	+		GFF3543	0.55	-0.0
3,591,828	-		GFF3543	0.55	+0.2
3,591,850	+		GFF3543	0.56	-0.7
3,591,858	-		GFF3543	0.57	-0.3
3,591,858	-		GFF3543	0.57	+1.9
3,591,873	+		GFF3543	0.57	+0.2
3,591,873	+		GFF3543	0.57	+0.2
3,591,881	-		GFF3543	0.58	-0.8
3,591,881	-		GFF3543	0.58	-0.2
3,591,881	-		GFF3543	0.58	-1.4
3,591,883	+		GFF3543	0.58	-1.6
3,591,891	+		GFF3543	0.58	-0.5
3,591,891	-		GFF3543	0.58	-1.8
3,591,921	+		GFF3543	0.60	+0.5
3,591,931	+		GFF3543	0.61	+0.1
3,591,931	+		GFF3543	0.61	+0.1
3,591,931	+		GFF3543	0.61	-0.0
3,591,931	+		GFF3543	0.61	-0.1
3,591,934	-		GFF3543	0.61	-1.1
3,591,938	+		GFF3543	0.61	+0.8
3,591,939	-		GFF3543	0.61	-0.4
3,591,939	-		GFF3543	0.61	+0.3
3,591,939	-		GFF3543	0.61	+0.1
3,591,980	+		GFF3543	0.63	-1.7
3,592,007	-		GFF3543	0.65	-0.2
3,592,071	+		GFF3543	0.69	-0.8
3,592,080	+		GFF3543	0.69	-1.0
3,592,080	+		GFF3543	0.69	-1.0
3,592,096	+		GFF3543	0.70	+0.0
3,592,099	-		GFF3543	0.70	+1.3
3,592,125	-		GFF3543	0.72	-2.8
3,592,144	+		GFF3543	0.73	-1.6
3,592,174	+		GFF3543	0.74	+1.3
3,592,183	+		GFF3543	0.75	+0.2
3,592,183	+		GFF3543	0.75	-0.0
3,592,183	+		GFF3543	0.75	-0.3
3,592,191	-		GFF3543	0.75	-0.2
3,592,191	-		GFF3543	0.75	-1.2
3,592,193	+		GFF3543	0.75	-1.4
3,592,215	-		GFF3543	0.77	+0.0
3,592,215	-		GFF3543	0.77	+0.8
3,592,216	-		GFF3543	0.77	-0.5
3,592,241	-		GFF3543	0.78	+0.6
3,592,270	+		GFF3543	0.80	+0.2
3,592,270	+		GFF3543	0.80	-0.4
3,592,290	-		GFF3543	0.81	+0.8
3,592,322	-		GFF3543	0.83	-0.8
3,592,329	+		GFF3543	0.83	+1.0
3,592,339	+		GFF3543	0.84	-1.5
3,592,348	-		GFF3543	0.84	-0.2
3,592,348	-		GFF3543	0.84	-2.6
3,592,353	+		GFF3543	0.85	+1.0
3,592,361	-		GFF3543	0.85	+0.4
3,592,376	+		GFF3543	0.86	+0.6
3,592,379	+		GFF3543	0.86	-0.1
3,592,381	+		GFF3543	0.86	+1.2
3,592,382	-		GFF3543	0.86	-1.4
3,592,384	-		GFF3543	0.86	-0.3
3,592,424	+		GFF3543	0.89	-1.5
3,592,429	+		GFF3543	0.89	-0.7
3,592,429	+		GFF3543	0.89	-0.0
3,592,429	+		GFF3543	0.89	+0.4
3,592,429	+		GFF3543	0.89	-0.6
3,592,429	+		GFF3543	0.89	-0.1
3,592,429	+		GFF3543	0.89	+0.5
3,592,429	+		GFF3543	0.89	+1.3
3,592,432	-		GFF3543	0.89	-0.4
3,592,437	-		GFF3543	0.89	-0.5
3,592,437	-		GFF3543	0.89	-1.3
3,592,437	-		GFF3543	0.89	-0.2
3,592,438	+		GFF3543	0.89	+0.4
3,592,487	+				+0.2
3,592,487	+				-0.0
3,592,487	+				-2.0
3,592,495	-				-1.2
3,592,495	-				-1.1
3,592,498	+				-1.5
3,592,498	+				+0.6
3,592,507	+				-2.0
3,592,508	-				+0.0
3,592,511	-				-0.2
3,592,521	-				+0.2
3,592,521	-				+0.7
3,592,521	-				+1.1
3,592,522	-				+0.5
3,592,522	-				-1.6
3,592,550	+				+0.4
3,592,579	+				+1.4
3,592,579	+				-0.2
3,592,579	+				+0.6
3,592,633	+				-0.2
3,592,651	-				+0.2
3,592,656	+				+0.4
3,592,659	-				-0.9
3,592,659	-				+0.8
3,592,661	+				-1.8
3,592,661	+				-1.2
3,592,664	-				+0.4
3,592,669	+				+0.4
3,592,669	+				+0.3
3,592,669	+				-0.4
3,592,669	+				-0.2
3,592,677	-				-1.4
3,592,677	-				+0.2
3,592,694	+				-0.9
3,592,696	+				-1.0
3,592,710	-				-0.7
3,592,719	-				-1.0
3,592,719	-				+0.7
3,592,722	+				-1.2
3,592,751	+				+0.1
3,592,751	+				+1.6
3,592,759	-		GFF3544	0.13	-1.5
3,592,759	-		GFF3544	0.13	-0.1
3,592,759	-		GFF3544	0.13	-1.5
3,592,764	-		GFF3544	0.15	+0.2
3,592,770	+		GFF3544	0.18	+0.5
3,592,771	-		GFF3544	0.19	-0.5
3,592,771	-		GFF3544	0.19	-2.1
3,592,774	+		GFF3544	0.21	+0.0
3,592,788	-		GFF3544	0.28	-0.5
3,592,795	+		GFF3544	0.31	-1.7
3,592,795	+		GFF3544	0.31	-1.2
3,592,807	+		GFF3544	0.37	-1.6
3,592,812	+		GFF3544	0.40	-0.5
3,592,814	+		GFF3544	0.41	+0.6
3,592,824	+		GFF3544	0.46	+1.4
3,592,832	-		GFF3544	0.50	-0.0
3,592,834	+		GFF3544	0.51	+0.4
3,592,841	+		GFF3544	0.55	+0.2
3,592,842	-		GFF3544	0.55	+0.4
3,592,871	+		GFF3544	0.70	+0.2
3,592,879	-		GFF3544	0.74	+0.4
3,593,064	-				-1.5
3,593,089	-				+0.3
3,593,089	-				-0.7
3,593,092	+				+0.7
3,593,135	+				+1.5
3,593,193	-		GFF3545	0.36	-0.5
3,593,206	+		GFF3545	0.44	-1.0
3,593,289	+				+0.6
3,593,304	+				-2.3
3,593,304	-				-0.5
3,593,312	+				+0.1
3,593,312	-				-1.3
3,593,312	-				+1.1
3,593,312	-				-3.3
3,593,312	-				-0.0
3,593,314	+				+0.2
3,593,314	+				-0.3
3,593,314	+				+0.0
3,593,314	+				-0.0
3,593,314	+				+0.8
3,593,314	+				-1.0
3,593,314	+				-0.3
3,593,320	-				-0.8
3,593,322	-				+0.7
3,593,322	-				-0.0
3,593,348	+				+0.8
3,593,367	+				+0.8
3,593,375	+				-0.6
3,593,382	-				+0.3
3,593,385	+				-1.3
3,593,390	-				+1.1
3,593,409	+				+0.8
3,593,414	+				-0.3
3,593,414	+				-1.3
3,593,414	+				+0.4
3,593,422	-				+0.2
3,593,422	-				-1.3
3,593,422	-				-0.2
3,593,433	+				-0.7
3,593,443	+				+0.4
3,593,444	+				+0.3
3,593,444	+				+0.8
3,593,451	-				+0.3
3,593,452	-				-0.7
3,593,452	-				+1.0
3,593,452	-				+0.8
3,593,454	+				-0.1
3,593,457	-		GFF3546	0.11	-0.7
3,593,457	-		GFF3546	0.11	+1.3
3,593,468	-		GFF3546	0.13	+1.5
3,593,471	+		GFF3546	0.14	+0.4
3,593,471	-		GFF3546	0.14	-1.4
3,593,472	+		GFF3546	0.15	+1.1
3,593,477	+		GFF3546	0.16	+0.4
3,593,477	+		GFF3546	0.16	-1.4
3,593,477	+		GFF3546	0.16	+0.2
3,593,477	+		GFF3546	0.16	+1.0
3,593,477	+		GFF3546	0.16	+0.6
3,593,477	+		GFF3546	0.16	+0.1
3,593,477	+		GFF3546	0.16	+0.9
3,593,480	-		GFF3546	0.17	+1.2
3,593,480	-		GFF3546	0.17	+0.0
3,593,485	-		GFF3546	0.18	-1.0
3,593,485	-		GFF3546	0.18	-0.4
3,593,485	-		GFF3546	0.18	-2.3
3,593,485	-		GFF3546	0.18	-1.2
3,593,485	-		GFF3546	0.18	-1.6
3,593,487	+		GFF3546	0.19	-1.1
3,593,487	+		GFF3546	0.19	+1.4
3,593,494	+		GFF3546	0.20	-0.1
3,593,494	+		GFF3546	0.20	+0.2
3,593,494	+		GFF3546	0.20	+0.8
3,593,494	+		GFF3546	0.20	-0.3
3,593,494	+		GFF3546	0.20	-0.6
3,593,494	+		GFF3546	0.20	-0.6
3,593,494	+		GFF3546	0.20	-0.4
3,593,494	+		GFF3546	0.20	+0.2
3,593,494	+		GFF3546	0.20	+1.2
3,593,494	+		GFF3546	0.20	+0.3
3,593,494	+		GFF3546	0.20	+0.6
3,593,494	+		GFF3546	0.20	+1.4
3,593,494	+		GFF3546	0.20	+0.2
3,593,494	+		GFF3546	0.20	+0.5
3,593,494	+		GFF3546	0.20	-0.6
3,593,495	-		GFF3546	0.21	-0.2
3,593,500	-		GFF3546	0.22	+1.0
3,593,502	-		GFF3546	0.22	-1.3
3,593,502	-		GFF3546	0.22	-0.9
3,593,502	-		GFF3546	0.22	+1.0
3,593,502	-		GFF3546	0.22	-0.3
3,593,502	-		GFF3546	0.22	+0.7
3,593,503	+		GFF3546	0.23	-0.0
3,593,536	-		GFF3546	0.31	-0.8
3,593,541	-		GFF3546	0.33	+0.5
3,593,556	+		GFF3546	0.37	-0.3
3,593,556	+		GFF3546	0.37	-1.8
3,593,564	-		GFF3546	0.39	-0.1
3,593,577	+		GFF3546	0.42	-0.3
3,593,579	-		GFF3546	0.43	-0.4
3,593,582	+		GFF3546	0.44	+0.4
3,593,582	+		GFF3546	0.44	-0.6
3,593,582	+		GFF3546	0.44	+0.3
3,593,592	+		GFF3546	0.46	+0.9
3,593,593	-		GFF3546	0.47	-1.8
3,593,593	-		GFF3546	0.47	-0.0
3,593,593	-		GFF3546	0.47	-1.3
3,593,622	+		GFF3546	0.54	-0.5
3,593,622	+		GFF3546	0.54	+0.6
3,593,622	+		GFF3546	0.54	+0.9
3,593,627	+		GFF3546	0.56	-1.1
3,593,627	+		GFF3546	0.56	-0.3
3,593,627	+		GFF3546	0.56	+0.8
3,593,627	+		GFF3546	0.56	-1.3
3,593,627	+		GFF3546	0.56	-1.3
3,593,630	-		GFF3546	0.56	-0.3
3,593,635	-		GFF3546	0.58	+0.2
3,593,635	-		GFF3546	0.58	-0.6
3,593,635	-		GFF3546	0.58	+0.1
3,593,647	-		GFF3546	0.61	+0.5
3,593,649	+		GFF3546	0.61	+0.3
3,593,649	+		GFF3546	0.61	+0.0
3,593,649	+		GFF3546	0.61	-0.1
3,593,649	+		GFF3546	0.61	-0.2
3,593,649	+		GFF3546	0.61	+0.5
3,593,649	+		GFF3546	0.61	-0.7
3,593,649	+		GFF3546	0.61	-1.0
3,593,649	+		GFF3546	0.61	-1.5
3,593,649	+		GFF3546	0.61	+0.4
3,593,656	+		GFF3546	0.63	-0.7
3,593,656	+		GFF3546	0.63	-0.7
3,593,657	-		GFF3546	0.63	-2.1
3,593,657	-		GFF3546	0.63	-0.7
3,593,657	-		GFF3546	0.63	-0.9
3,593,657	-		GFF3546	0.63	-0.4
3,593,657	-		GFF3546	0.63	-0.6
3,593,657	-		GFF3546	0.63	+0.7
3,593,664	-		GFF3546	0.65	+0.4
3,593,664	-		GFF3546	0.65	+0.0
3,593,666	+		GFF3546	0.66	+0.3
3,593,691	-		GFF3546	0.72	+0.9
3,593,708	+		GFF3546	0.77	+1.0
3,593,716	-		GFF3546	0.79	-0.1
3,593,716	-		GFF3546	0.79	-0.3
3,593,716	-		GFF3546	0.79	+0.8
3,593,724	+		GFF3546	0.81	-1.0
3,593,724	+		GFF3546	0.81	-1.5
3,593,724	+		GFF3546	0.81	+0.8
3,593,732	-		GFF3546	0.83	+0.0
3,593,758	-				+0.1
3,593,760	+				-1.2
3,593,763	-				+0.3
3,593,768	+				-0.4
3,593,768	-				-1.7
3,593,768	-				+0.4
3,593,779	+				-0.7
3,593,787	-				-1.5
3,593,789	+				+0.6
3,593,789	+				-0.2
3,593,812	+				-0.4
3,593,819	+				-0.4
3,593,825	+				-1.3
3,593,827	-				-0.0
3,593,827	-				+1.0
3,593,831	+				-0.5
3,593,832	-				-0.9
3,593,833	-				+0.0
3,593,890	+		GFF3547	0.13	+0.4
3,593,890	+		GFF3547	0.13	-1.2
3,593,890	+		GFF3547	0.13	+0.6
3,593,890	+		GFF3547	0.13	+0.1
3,593,890	+		GFF3547	0.13	+1.3
3,593,890	+		GFF3547	0.13	-0.3
3,593,890	+		GFF3547	0.13	-1.3
3,593,895	+		GFF3547	0.14	-0.8
3,593,898	-		GFF3547	0.14	-0.1
3,593,898	-		GFF3547	0.14	+1.0
3,593,898	-		GFF3547	0.14	-1.8
3,593,898	-		GFF3547	0.14	-0.7
3,593,898	-		GFF3547	0.14	+0.4
3,593,906	+		GFF3547	0.15	-0.6
3,593,912	-		GFF3547	0.16	+1.3
3,593,924	+		GFF3547	0.18	+0.1