Strain Fitness in Sphingobium sp. HT1-2 around GFF3543

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,589,860	-		GFF3542	0.19	+0.7
3,589,862	+		GFF3542	0.20	-1.6
3,589,875	-		GFF3542	0.21	-0.7
3,589,904	-		GFF3542	0.23	-1.5
3,589,906	+		GFF3542	0.23	-1.6
3,589,916	+		GFF3542	0.24	-0.5
3,589,918	-		GFF3542	0.24	+0.0
3,589,926	+		GFF3542	0.25	-0.7
3,589,939	+		GFF3542	0.26	-1.5
3,589,944	+		GFF3542	0.27	+0.2
3,589,944	+		GFF3542	0.27	-0.3
3,589,954	-		GFF3542	0.28	-0.6
3,589,980	+		GFF3542	0.30	+1.5
3,589,988	-		GFF3542	0.31	+0.0
3,589,993	+		GFF3542	0.31	+0.7
3,589,993	+		GFF3542	0.31	+1.0
3,589,993	+		GFF3542	0.31	+0.0
3,590,000	-		GFF3542	0.32	+0.3
3,590,001	-		GFF3542	0.32	+0.5
3,590,011	+		GFF3542	0.33	-0.3
3,590,025	+		GFF3542	0.34	-0.3
3,590,028	+		GFF3542	0.34	-0.4
3,590,042	+		GFF3542	0.35	-3.2
3,590,045	+		GFF3542	0.36	+1.8
3,590,050	+		GFF3542	0.36	-0.7
3,590,050	-		GFF3542	0.36	+0.2
3,590,055	+		GFF3542	0.36	-2.6
3,590,057	+		GFF3542	0.37	-0.3
3,590,072	+		GFF3542	0.38	-0.2
3,590,080	-		GFF3542	0.39	+1.5
3,590,092	-		GFF3542	0.40	+0.8
3,590,138	+		GFF3542	0.44	-0.5
3,590,138	+		GFF3542	0.44	-0.8
3,590,163	+		GFF3542	0.46	+0.6
3,590,163	+		GFF3542	0.46	-0.0
3,590,163	+		GFF3542	0.46	+0.3
3,590,169	+		GFF3542	0.46	-0.5
3,590,169	+		GFF3542	0.46	+0.1
3,590,169	+		GFF3542	0.46	+0.2
3,590,169	+		GFF3542	0.46	-1.0
3,590,169	+		GFF3542	0.46	+0.6
3,590,169	+		GFF3542	0.46	-0.5
3,590,169	+		GFF3542	0.46	-0.1
3,590,171	-		GFF3542	0.47	-0.7
3,590,171	-		GFF3542	0.47	-2.0
3,590,171	-		GFF3542	0.47	-1.3
3,590,171	-		GFF3542	0.47	-0.3
3,590,171	-		GFF3542	0.47	+0.2
3,590,171	-		GFF3542	0.47	-0.7
3,590,172	-		GFF3542	0.47	-0.2
3,590,177	-		GFF3542	0.47	-0.5
3,590,177	-		GFF3542	0.47	-0.3
3,590,177	-		GFF3542	0.47	-1.5
3,590,177	-		GFF3542	0.47	+0.7
3,590,177	-		GFF3542	0.47	+0.3
3,590,177	-		GFF3542	0.47	+0.5
3,590,177	-		GFF3542	0.47	-0.1
3,590,191	+		GFF3542	0.48	-1.0
3,590,213	+		GFF3542	0.50	+0.7
3,590,213	+		GFF3542	0.50	+0.8
3,590,213	+		GFF3542	0.50	-1.0
3,590,213	+		GFF3542	0.50	-3.1
3,590,214	-		GFF3542	0.50	-0.4
3,590,214	-		GFF3542	0.50	+0.7
3,590,221	-		GFF3542	0.51	+0.6
3,590,228	+		GFF3542	0.52	-0.1
3,590,228	+		GFF3542	0.52	-0.4
3,590,236	-		GFF3542	0.52	-1.2
3,590,248	-		GFF3542	0.53	-0.4
3,590,303	+		GFF3542	0.58	+0.7
3,590,303	+		GFF3542	0.58	-1.0
3,590,303	+		GFF3542	0.58	-0.4
3,590,309	-		GFF3542	0.59	-2.4
3,590,309	-		GFF3542	0.59	-0.4
3,590,311	-		GFF3542	0.59	+0.1
3,590,311	-		GFF3542	0.59	+1.0
3,590,311	-		GFF3542	0.59	-1.2
3,590,311	-		GFF3542	0.59	-0.7
3,590,327	+		GFF3542	0.60	+1.2
3,590,330	-		GFF3542	0.60	-1.4
3,590,364	+		GFF3542	0.63	-1.9
3,590,364	+		GFF3542	0.63	-1.0
3,590,364	+		GFF3542	0.63	-2.7
3,590,371	+		GFF3542	0.64	+0.2
3,590,372	-		GFF3542	0.64	-0.0
3,590,372	-		GFF3542	0.64	+1.4
3,590,372	-		GFF3542	0.64	+0.2
3,590,372	-		GFF3542	0.64	+1.0
3,590,372	-		GFF3542	0.64	-1.5
3,590,372	-		GFF3542	0.64	+0.1
3,590,379	-		GFF3542	0.65	+0.1
3,590,385	+		GFF3542	0.65	+1.9
3,590,408	+		GFF3542	0.67	+0.4
3,590,415	-		GFF3542	0.68	-0.0
3,590,423	+		GFF3542	0.69	-0.1
3,590,429	+		GFF3542	0.69	-0.9
3,590,429	+		GFF3542	0.69	+0.6
3,590,437	-		GFF3542	0.70	-2.0
3,590,454	-		GFF3542	0.71	+1.3
3,590,454	-		GFF3542	0.71	+0.7
3,590,454	-		GFF3542	0.71	-0.2
3,590,459	-		GFF3542	0.72	+0.0
3,590,504	-		GFF3542	0.76	-2.3
3,590,508	+		GFF3542	0.76	+0.3
3,590,508	+		GFF3542	0.76	+1.0
3,590,520	+		GFF3542	0.77	+0.5
3,590,526	+		GFF3542	0.78	+1.5
3,590,551	-		GFF3542	0.80	+0.1
3,590,551	-		GFF3542	0.80	-0.3
3,590,551	-		GFF3542	0.80	+0.5
3,590,552	+		GFF3542	0.80	-2.3
3,590,553	+		GFF3542	0.80	+0.9
3,590,553	+		GFF3542	0.80	-1.3
3,590,553	+		GFF3542	0.80	+0.3
3,590,553	+		GFF3542	0.80	+0.3
3,590,553	+		GFF3542	0.80	-2.0
3,590,553	+		GFF3542	0.80	-1.0
3,590,558	+		GFF3542	0.80	+0.8
3,590,558	+		GFF3542	0.80	-2.4
3,590,558	+		GFF3542	0.80	-0.1
3,590,561	-		GFF3542	0.81	+0.3
3,590,561	-		GFF3542	0.81	-0.4
3,590,561	-		GFF3542	0.81	-0.8
3,590,561	-		GFF3542	0.81	-1.6
3,590,562	-		GFF3542	0.81	+1.3
3,590,566	-		GFF3542	0.81	-0.7
3,590,573	+		GFF3542	0.82	+1.0
3,590,582	+		GFF3542	0.83	+1.3
3,590,590	-		GFF3542	0.83	+0.1
3,590,590	-		GFF3542	0.83	+0.2
3,590,597	+		GFF3542	0.84	+1.0
3,590,646	-		GFF3542	0.88	+0.0
3,590,656	+		GFF3542	0.89	-0.4
3,590,669	+				+0.6
3,590,671	+				-0.2
3,590,672	-				+1.3
3,590,677	-				-0.1
3,590,677	-				+0.4
3,590,681	+				-0.7
3,590,709	+				+0.4
3,590,709	+				-1.2
3,590,709	+				+2.3
3,590,709	+				-0.2
3,590,709	+				-0.5
3,590,709	+				-0.2
3,590,709	+				-0.3
3,590,709	+				+0.8
3,590,709	+				+0.7
3,590,709	+				-0.0
3,590,709	+				-1.4
3,590,709	+				+1.6
3,590,709	+				+0.1
3,590,709	+				-0.8
3,590,709	+				-0.4
3,590,709	+				+1.5
3,590,709	+				-0.4
3,590,709	+				-0.4
3,590,709	+				+0.4
3,590,709	+				+1.5
3,590,709	+				+0.7
3,590,709	+				-1.9
3,590,709	+				-0.3
3,590,717	-				-2.1
3,590,717	-				-0.3
3,590,717	-				+1.9
3,590,717	-				+0.6
3,590,717	-				-0.2
3,590,717	-				+0.2
3,590,717	-				-2.6
3,590,717	-				-0.1
3,590,717	-				-0.2
3,590,717	-				-1.8
3,590,717	-				+0.6
3,590,717	-				+0.2
3,590,717	-				+0.2
3,590,717	-				-0.5
3,590,717	-				+1.0
3,590,732	-				+0.1
3,590,736	+				-0.2
3,590,744	-				-1.3
3,590,746	+				+1.4
3,590,749	-				+0.5
3,590,768	+				+0.1
3,590,773	+				-1.7
3,590,776	-				-0.8
3,590,783	+				-0.1
3,590,783	+				-2.3
3,590,790	+				-1.3
3,590,809	+				-1.7
3,590,817	+				-1.2
3,590,827	+				-0.4
3,590,828	+				+0.7
3,590,833	+				-2.0
3,590,835	-				-1.2
3,590,835	-				-0.0
3,590,837	+				+0.3
3,590,847	+				-0.1
3,590,847	+				+0.4
3,590,849	+				-2.0
3,590,854	+				+0.0
3,590,855	-				-0.7
3,590,859	+				+0.8
3,590,862	-				+0.2
3,590,862	-				+0.1
3,590,867	-				-1.3
3,590,867	-				-0.7
3,590,905	+				-0.8
3,590,906	-				-0.0
3,590,912	-				+0.4
3,590,913	-				-0.1
3,590,913	-				+0.4
3,590,931	+				-1.1
3,590,938	-				+1.1
3,590,942	+				+1.0
3,590,942	+				+0.6
3,590,942	+				+0.4
3,590,950	-				-1.4
3,590,950	-				+0.3
3,590,959	+				-1.2
3,590,967	+				-0.2
3,590,977	+				-2.7
3,590,984	+				-2.7
3,590,984	+				+0.7
3,590,984	+				-1.2
3,590,992	-				+0.0
3,590,992	-				-0.4
3,590,992	-				-1.8
3,590,992	-				-1.0
3,590,998	+				+1.1
3,591,002	-				+0.3
3,591,006	-				+0.6
3,591,068	+		GFF3543	0.12	+1.6
3,591,068	+		GFF3543	0.12	-0.4
3,591,068	+		GFF3543	0.12	-0.3
3,591,068	+		GFF3543	0.12	+0.5
3,591,068	+		GFF3543	0.12	+0.5
3,591,068	+		GFF3543	0.12	-1.2
3,591,073	-		GFF3543	0.12	-0.8
3,591,076	-		GFF3543	0.12	-1.6
3,591,084	+		GFF3543	0.13	-0.2
3,591,084	+		GFF3543	0.13	+0.5
3,591,084	+		GFF3543	0.13	-0.2
3,591,092	-		GFF3543	0.13	+0.0
3,591,092	-		GFF3543	0.13	-0.5
3,591,094	+		GFF3543	0.13	+1.8
3,591,107	+		GFF3543	0.14	-0.0
3,591,107	-		GFF3543	0.14	-0.3
3,591,115	-		GFF3543	0.15	-0.6
3,591,126	+		GFF3543	0.15	-0.4
3,591,131	+		GFF3543	0.15	+1.0
3,591,133	+		GFF3543	0.16	+1.4
3,591,133	+		GFF3543	0.16	-1.3
3,591,139	+		GFF3543	0.16	+1.1
3,591,141	-		GFF3543	0.16	+0.4
3,591,141	-		GFF3543	0.16	+0.9
3,591,151	+		GFF3543	0.17	+0.8
3,591,159	-		GFF3543	0.17	+0.4
3,591,159	-		GFF3543	0.17	-0.2
3,591,159	-		GFF3543	0.17	+1.6
3,591,159	-		GFF3543	0.17	+0.2
3,591,183	+		GFF3543	0.18	-0.4
3,591,192	+		GFF3543	0.19	-1.5
3,591,192	-		GFF3543	0.19	-1.2
3,591,203	+		GFF3543	0.20	+0.9
3,591,208	+		GFF3543	0.20	+0.3
3,591,212	+		GFF3543	0.20	-1.0
3,591,220	-		GFF3543	0.21	-0.2
3,591,250	-		GFF3543	0.22	-0.0
3,591,255	+		GFF3543	0.22	-0.4
3,591,272	+		GFF3543	0.23	+0.0
3,591,272	+		GFF3543	0.23	-0.5
3,591,272	-		GFF3543	0.23	-0.4
3,591,277	+		GFF3543	0.24	-0.4
3,591,280	-		GFF3543	0.24	+0.9
3,591,280	-		GFF3543	0.24	+0.1
3,591,315	+		GFF3543	0.26	+0.2
3,591,330	+		GFF3543	0.27	+1.7
3,591,338	-		GFF3543	0.27	-0.5
3,591,349	+		GFF3543	0.28	+0.3
3,591,349	+		GFF3543	0.28	+1.1
3,591,357	-		GFF3543	0.28	-0.4
3,591,359	+		GFF3543	0.28	-0.4
3,591,376	+		GFF3543	0.29	-1.5
3,591,384	-		GFF3543	0.30	-1.1
3,591,389	-		GFF3543	0.30	-0.7
3,591,393	+		GFF3543	0.30	-0.3
3,591,402	-		GFF3543	0.31	+0.2
3,591,408	+		GFF3543	0.31	+1.1
3,591,416	-		GFF3543	0.32	-0.3
3,591,418	+		GFF3543	0.32	+1.4
3,591,484	-		GFF3543	0.35	-0.9
3,591,484	-		GFF3543	0.35	+0.2
3,591,559	+		GFF3543	0.40	+1.2
3,591,567	+		GFF3543	0.40	+0.8
3,591,567	+		GFF3543	0.40	+0.4
3,591,567	+		GFF3543	0.40	+0.2
3,591,567	+		GFF3543	0.40	-2.3
3,591,575	-		GFF3543	0.41	+0.3
3,591,583	-		GFF3543	0.41	+0.1
3,591,585	-		GFF3543	0.41	-1.3
3,591,610	+		GFF3543	0.43	+1.0
3,591,629	-		GFF3543	0.44	-0.5
3,591,629	-		GFF3543	0.44	+0.8
3,591,631	+		GFF3543	0.44	-1.7
3,591,631	+		GFF3543	0.44	-1.8
3,591,631	+		GFF3543	0.44	+0.1
3,591,631	+		GFF3543	0.44	+0.5
3,591,631	+		GFF3543	0.44	-0.0
3,591,631	+		GFF3543	0.44	+0.3
3,591,631	+		GFF3543	0.44	+0.2
3,591,634	-		GFF3543	0.44	+0.8
3,591,634	-		GFF3543	0.44	+0.0
3,591,639	-		GFF3543	0.44	-1.3
3,591,639	-		GFF3543	0.44	-0.7
3,591,639	-		GFF3543	0.44	+0.0
3,591,639	-		GFF3543	0.44	+0.3
3,591,639	-		GFF3543	0.44	+0.9
3,591,639	-		GFF3543	0.44	+0.3
3,591,639	-		GFF3543	0.44	-0.0
3,591,639	-		GFF3543	0.44	-1.4
3,591,639	-		GFF3543	0.44	+0.3
3,591,639	-		GFF3543	0.44	-2.1
3,591,639	-		GFF3543	0.44	+0.9
3,591,660	-		GFF3543	0.45	-0.2
3,591,660	-		GFF3543	0.45	+1.0
3,591,661	-		GFF3543	0.45	-0.1
3,591,664	+		GFF3543	0.46	+0.8
3,591,664	+		GFF3543	0.46	-0.0
3,591,664	+		GFF3543	0.46	-1.3
3,591,665	-		GFF3543	0.46	+0.4
3,591,672	-		GFF3543	0.46	+0.3
3,591,672	-		GFF3543	0.46	-1.2
3,591,702	+		GFF3543	0.48	-0.5
3,591,710	-		GFF3543	0.48	-0.5
3,591,712	+		GFF3543	0.48	+0.5
3,591,720	+		GFF3543	0.49	-1.4
3,591,727	+		GFF3543	0.49	+0.8
3,591,727	+		GFF3543	0.49	-1.2
3,591,733	+		GFF3543	0.49	+0.8
3,591,733	+		GFF3543	0.49	-0.6
3,591,734	+		GFF3543	0.50	+0.4
3,591,735	-		GFF3543	0.50	+0.8
3,591,741	+		GFF3543	0.50	+0.8
3,591,741	-		GFF3543	0.50	-0.6
3,591,742	-		GFF3543	0.50	+0.2
3,591,742	-		GFF3543	0.50	-0.3
3,591,742	-		GFF3543	0.50	-2.0
3,591,742	-		GFF3543	0.50	+0.6
3,591,742	-		GFF3543	0.50	-0.1
3,591,780	+		GFF3543	0.52	-0.4
3,591,787	+		GFF3543	0.53	+0.4
3,591,787	-		GFF3543	0.53	+0.1
3,591,789	+		GFF3543	0.53	-1.9
3,591,789	+		GFF3543	0.53	+1.0
3,591,789	+		GFF3543	0.53	-0.8
3,591,795	-		GFF3543	0.53	+0.4
3,591,795	-		GFF3543	0.53	+0.8
3,591,797	+		GFF3543	0.53	+0.3
3,591,802	+		GFF3543	0.53	-0.0
3,591,805	-		GFF3543	0.54	+1.5
3,591,805	-		GFF3543	0.54	+0.6
3,591,805	-		GFF3543	0.54	-0.9
3,591,825	+		GFF3543	0.55	-0.0
3,591,828	-		GFF3543	0.55	+0.2
3,591,850	+		GFF3543	0.56	-0.7
3,591,858	-		GFF3543	0.57	-0.3
3,591,858	-		GFF3543	0.57	+1.9
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3,592,348	-		GFF3543	0.84	-2.6
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3,592,487	+				-0.0
3,592,487	+				-2.0
3,592,495	-				-1.2
3,592,495	-				-1.1
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3,592,498	+				+0.6
3,592,507	+				-2.0
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3,592,511	-				-0.2
3,592,521	-				+0.2
3,592,521	-				+0.7
3,592,521	-				+1.1
3,592,522	-				+0.5
3,592,522	-				-1.6
3,592,550	+				+0.4
3,592,579	+				+1.4
3,592,579	+				-0.2
3,592,579	+				+0.6
3,592,633	+				-0.2
3,592,651	-				+0.2
3,592,656	+				+0.4
3,592,659	-				-0.9
3,592,659	-				+0.8
3,592,661	+				-1.8
3,592,661	+				-1.2
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3,592,669	+				+0.4
3,592,669	+				+0.3
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3,592,669	+				-0.2
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3,592,677	-				+0.2
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3,592,710	-				-0.7
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3,592,722	+				-1.2
3,592,751	+				+0.1
3,592,751	+				+1.6
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3,592,771	-		GFF3544	0.19	-2.1
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3,593,089	-				+0.3
3,593,089	-				-0.7
3,593,092	+				+0.7
3,593,135	+				+1.5
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3,593,304	+				-2.3
3,593,304	-				-0.5
3,593,312	+				+0.1
3,593,312	-				-1.3
3,593,312	-				+1.1
3,593,312	-				-3.3
3,593,312	-				-0.0
3,593,314	+				+0.2
3,593,314	+				-0.3
3,593,314	+				+0.0
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3,593,314	+				+0.8
3,593,314	+				-1.0
3,593,314	+				-0.3
3,593,320	-				-0.8
3,593,322	-				+0.7
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3,593,348	+				+0.8
3,593,367	+				+0.8
3,593,375	+				-0.6
3,593,382	-				+0.3
3,593,385	+				-1.3
3,593,390	-				+1.1
3,593,409	+				+0.8
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3,593,414	+				-1.3
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3,593,422	-				-1.3
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3,593,444	+				+0.8
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3,593,452	-				-0.7
3,593,452	-				+1.0
3,593,452	-				+0.8
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