Strain Fitness in Sphingobium sp. HT1-2 around GFF3524

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,565,595	-		GFF3523	0.68	+0.5
3,565,596	-		GFF3523	0.68	-0.4
3,565,596	-		GFF3523	0.68	-2.1
3,565,601	-		GFF3523	0.68	+0.7
3,565,603	-		GFF3523	0.68	-1.7
3,565,610	-		GFF3523	0.68	+0.7
3,565,617	+		GFF3523	0.68	+0.1
3,565,617	+		GFF3523	0.68	+0.5
3,565,620	-		GFF3523	0.69	-1.2
3,565,624	-		GFF3523	0.69	+0.1
3,565,696	-		GFF3523	0.71	-1.4
3,565,698	+		GFF3523	0.71	-0.2
3,565,701	-		GFF3523	0.71	-2.0
3,565,738	+		GFF3523	0.73	-0.7
3,565,753	+		GFF3523	0.73	-1.8
3,565,774	+		GFF3523	0.74	+0.3
3,565,775	-		GFF3523	0.74	-0.1
3,565,779	+		GFF3523	0.74	+0.7
3,565,850	+		GFF3523	0.77	-2.0
3,565,850	+		GFF3523	0.77	-0.9
3,565,850	+		GFF3523	0.77	-0.9
3,565,914	+		GFF3523	0.79	+1.6
3,565,914	+		GFF3523	0.79	+0.8
3,565,914	+		GFF3523	0.79	-0.2
3,565,914	+		GFF3523	0.79	-0.7
3,565,914	+		GFF3523	0.79	-0.2
3,565,922	+		GFF3523	0.79	+0.5
3,565,922	-		GFF3523	0.79	-0.4
3,565,922	-		GFF3523	0.79	-1.6
3,565,922	-		GFF3523	0.79	+0.6
3,565,922	-		GFF3523	0.79	+0.3
3,565,922	-		GFF3523	0.79	-0.1
3,565,922	-		GFF3523	0.79	+0.8
3,565,922	-		GFF3523	0.79	+0.1
3,565,924	+		GFF3523	0.80	+0.9
3,565,924	+		GFF3523	0.80	+1.3
3,565,927	-		GFF3523	0.80	-1.3
3,565,972	+		GFF3523	0.81	-0.6
3,565,975	-		GFF3523	0.81	+0.9
3,565,975	-		GFF3523	0.81	-2.1
3,565,980	-		GFF3523	0.82	+0.1
3,565,999	+		GFF3523	0.82	-1.1
3,565,999	+		GFF3523	0.82	+1.4
3,565,999	+		GFF3523	0.82	-1.4
3,566,007	-		GFF3523	0.83	-1.0
3,566,007	-		GFF3523	0.83	+0.0
3,566,026	+		GFF3523	0.83	-0.0
3,566,029	-		GFF3523	0.83	-0.3
3,566,034	+		GFF3523	0.83	-0.3
3,566,069	+		GFF3523	0.85	-1.2
3,566,070	+		GFF3523	0.85	-0.4
3,566,073	-		GFF3523	0.85	-0.5
3,566,086	+		GFF3523	0.85	+1.5
3,566,103	+		GFF3523	0.86	+1.8
3,566,103	+		GFF3523	0.86	-2.6
3,566,121	+		GFF3523	0.87	+0.3
3,566,121	+		GFF3523	0.87	-0.3
3,566,121	+		GFF3523	0.87	-0.4
3,566,135	-		GFF3523	0.87	+0.6
3,566,136	+		GFF3523	0.87	-0.1
3,566,198	-		GFF3523	0.89	-0.4
3,566,209	+		GFF3523	0.90	+0.3
3,566,222	+				-1.4
3,566,222	+				-0.1
3,566,222	+				+0.6
3,566,230	-				+0.6
3,566,242	+				-1.5
3,566,244	-				+0.1
3,566,253	+				+1.2
3,566,253	+				-0.7
3,566,253	+				-0.4
3,566,253	+				-0.2
3,566,261	-				-0.1
3,566,261	-				-0.7
3,566,268	+				+0.3
3,566,272	-				-0.3
3,566,283	+				-0.3
3,566,283	+				-0.9
3,566,283	+				-3.1
3,566,283	+				-0.3
3,566,283	+				-1.1
3,566,291	-				+0.1
3,566,291	-				+0.6
3,566,293	+				-0.8
3,566,301	-				+0.3
3,566,310	-				-0.1
3,566,310	-				-0.7
3,566,310	-				-1.8
3,566,316	+				-0.8
3,566,317	+				-0.4
3,566,317	+				-1.7
3,566,325	-				-0.0
3,566,330	-				-3.0
3,566,332	+				+1.3
3,566,332	+				-0.1
3,566,332	+				-2.2
3,566,332	+				+0.2
3,566,332	+				+0.8
3,566,340	-				+0.5
3,566,340	-				+1.5
3,566,340	-				-2.8
3,566,340	-				-2.3
3,566,349	+				-2.4
3,566,364	-				-0.3
3,566,364	-				-1.1
3,566,370	+				-0.5
3,566,378	-				-2.1
3,566,391	+				-0.1
3,566,391	+				-0.4
3,566,399	-				-0.3
3,566,399	-				+1.0
3,566,401	+				-0.2
3,566,401	+				-2.4
3,566,401	+				-0.7
3,566,406	+				-0.3
3,566,450	+				-0.9
3,566,450	+				-0.0
3,566,450	+				-0.4
3,566,450	+				+0.6
3,566,450	+				-0.4
3,566,450	+				-1.1
3,566,453	-				+1.0
3,566,458	-				-0.4
3,566,458	-				-0.9
3,566,460	+				-0.6
3,566,468	-				-0.1
3,566,475	+				-0.1
3,566,475	+				-1.9
3,566,475	+				-0.1
3,566,475	+				+0.3
3,566,475	+				-0.6
3,566,475	+				-0.2
3,566,475	+				+0.9
3,566,483	-				-2.0
3,566,483	-				-1.5
3,566,483	-				-0.7
3,566,483	-				-0.5
3,566,483	-				+0.1
3,566,483	-				+1.3
3,566,489	+				+1.1
3,566,489	+				+0.5
3,566,489	+				+0.6
3,566,489	+				-0.1
3,566,497	-				-0.4
3,566,497	-				-0.3
3,566,497	-				-0.4
3,566,497	-				-2.4
3,566,497	-				-0.6
3,566,518	+				-0.4
3,566,518	+				-0.6
3,566,535	-				-1.9
3,566,545	-				-1.6
3,566,553	+				+0.0
3,566,553	+				+0.9
3,566,558	+				+0.5
3,566,558	+				-1.3
3,566,558	+				+0.3
3,566,558	+				-0.4
3,566,558	+				-0.2
3,566,560	+				+0.4
3,566,560	+				-0.3
3,566,561	-				+0.6
3,566,561	-				-0.1
3,566,561	-				-2.2
3,566,566	-				-0.9
3,566,566	-				-0.2
3,566,566	-				+0.3
3,566,568	-				-1.4
3,566,610	-				-1.2
3,566,641	+				+0.3
3,566,642	-				+0.3
3,566,648	+				-0.9
3,566,650	-				-1.7
3,566,702	+				+1.6
3,566,702	+				-1.4
3,566,702	+				-0.6
3,566,702	+				-0.3
3,566,702	+				-0.4
3,566,702	+				+0.1
3,566,702	+				-0.5
3,566,710	-				-1.9
3,566,710	-				-1.7
3,566,710	-				-0.3
3,566,710	-				-1.4
3,566,710	-				+0.2
3,566,710	-				+0.8
3,566,710	-				+0.0
3,566,710	-				-0.7
3,566,710	-				+1.1
3,566,710	-				-0.5
3,566,717	+				+1.0
3,566,717	+				+0.1
3,566,717	+				-0.6
3,566,717	+				-0.4
3,566,724	+				+0.2
3,566,725	-				-0.2
3,566,725	-				-0.9
3,566,725	-				+0.8
3,566,725	-				+0.1
3,566,732	+				+0.3
3,566,732	-				-0.8
3,566,737	+				-0.4
3,566,737	+				-1.0
3,566,737	+				+0.1
3,566,737	-				+0.3
3,566,740	-				-1.3
3,566,749	+				-0.7
3,566,749	+				+0.4
3,566,769	-		GFF3524	0.10	-1.0
3,566,784	+		GFF3524	0.11	-0.9
3,566,797	-		GFF3524	0.12	-0.9
3,566,809	-		GFF3524	0.13	-0.3
3,566,811	+		GFF3524	0.13	+1.7
3,566,819	-		GFF3524	0.13	-0.4
3,566,819	-		GFF3524	0.13	-1.6
3,566,838	-		GFF3524	0.14	-2.8
3,566,842	+		GFF3524	0.15	+0.8
3,566,843	+		GFF3524	0.15	+0.2
3,566,843	+		GFF3524	0.15	+0.3
3,566,843	+		GFF3524	0.15	-0.3
3,566,843	+		GFF3524	0.15	+0.2
3,566,843	+		GFF3524	0.15	-0.5
3,566,843	+		GFF3524	0.15	+0.7
3,566,843	+		GFF3524	0.15	-0.4
3,566,843	+		GFF3524	0.15	+0.3
3,566,843	+		GFF3524	0.15	-0.1
3,566,843	+		GFF3524	0.15	-0.5
3,566,843	+		GFF3524	0.15	-1.9
3,566,843	+		GFF3524	0.15	-0.2
3,566,843	+		GFF3524	0.15	-0.6
3,566,848	+		GFF3524	0.15	+0.7
3,566,851	-		GFF3524	0.15	-0.7
3,566,851	-		GFF3524	0.15	+0.3
3,566,851	-		GFF3524	0.15	+1.0
3,566,851	-		GFF3524	0.15	+0.5
3,566,851	-		GFF3524	0.15	-2.2
3,566,851	-		GFF3524	0.15	-1.4
3,566,851	-		GFF3524	0.15	-1.1
3,566,851	-		GFF3524	0.15	+0.3
3,566,856	-		GFF3524	0.15	-1.2
3,566,858	-		GFF3524	0.16	-0.7
3,566,864	+		GFF3524	0.16	-1.8
3,566,864	+		GFF3524	0.16	+0.1
3,566,864	+		GFF3524	0.16	-2.4
3,566,869	+		GFF3524	0.16	-0.3
3,566,872	-		GFF3524	0.16	+0.7
3,566,872	-		GFF3524	0.16	-0.1
3,566,872	-		GFF3524	0.16	-0.9
3,566,874	+		GFF3524	0.17	+0.8
3,566,874	+		GFF3524	0.17	-1.2
3,566,877	-		GFF3524	0.17	-0.2
3,566,882	-		GFF3524	0.17	-1.0
3,566,912	+		GFF3524	0.19	-0.9
3,566,912	+		GFF3524	0.19	-0.6
3,566,916	+		GFF3524	0.19	-1.3
3,566,940	+		GFF3524	0.20	-2.0
3,566,941	+		GFF3524	0.20	-0.3
3,566,941	+		GFF3524	0.20	+0.0
3,566,944	-		GFF3524	0.21	-1.2
3,566,958	+		GFF3524	0.21	+0.1
3,566,962	+		GFF3524	0.22	-0.1
3,566,962	+		GFF3524	0.22	+1.3
3,566,962	+		GFF3524	0.22	-0.6
3,566,970	-		GFF3524	0.22	-0.4
3,566,994	+		GFF3524	0.24	+0.9
3,566,994	+		GFF3524	0.24	+0.9
3,566,994	+		GFF3524	0.24	+0.9
3,567,002	-		GFF3524	0.24	-1.2
3,567,002	-		GFF3524	0.24	-0.2
3,567,002	-		GFF3524	0.24	-0.2
3,567,030	-		GFF3524	0.26	-1.7
3,567,047	+		GFF3524	0.27	-1.3
3,567,047	+		GFF3524	0.27	+0.3
3,567,048	+		GFF3524	0.27	-1.1
3,567,055	-		GFF3524	0.27	+0.7
3,567,094	+		GFF3524	0.29	-0.7
3,567,094	+		GFF3524	0.29	-0.3
3,567,102	-		GFF3524	0.30	+0.6
3,567,102	-		GFF3524	0.30	+0.0
3,567,106	+		GFF3524	0.30	-1.2
3,567,120	-		GFF3524	0.31	-0.3
3,567,127	+		GFF3524	0.31	-1.3
3,567,150	-		GFF3524	0.33	-0.4
3,567,215	-		GFF3524	0.36	+0.6
3,567,233	-		GFF3524	0.37	-2.3
3,567,233	-		GFF3524	0.37	-1.2
3,567,242	+		GFF3524	0.38	-0.1
3,567,245	-		GFF3524	0.38	-0.4
3,567,250	-		GFF3524	0.38	-0.3
3,567,258	-		GFF3524	0.39	+0.9
3,567,261	+		GFF3524	0.39	+1.9
3,567,278	+		GFF3524	0.40	-1.7
3,567,287	+		GFF3524	0.41	+0.5
3,567,287	+		GFF3524	0.41	-1.3
3,567,295	-		GFF3524	0.41	-0.1
3,567,299	+		GFF3524	0.41	+0.1
3,567,319	-		GFF3524	0.42	-0.7
3,567,371	+		GFF3524	0.45	+0.2
3,567,389	-		GFF3524	0.46	+0.4
3,567,400	-		GFF3524	0.47	-1.4
3,567,400	-		GFF3524	0.47	+0.5
3,567,404	-		GFF3524	0.47	+0.6
3,567,404	-		GFF3524	0.47	-0.7
3,567,410	+		GFF3524	0.48	-0.2
3,567,410	+		GFF3524	0.48	+0.4
3,567,410	+		GFF3524	0.48	+0.2
3,567,410	+		GFF3524	0.48	-0.9
3,567,410	+		GFF3524	0.48	-0.4
3,567,410	+		GFF3524	0.48	+0.3
3,567,410	+		GFF3524	0.48	+1.1
3,567,410	+		GFF3524	0.48	-2.0
3,567,410	+		GFF3524	0.48	-1.0
3,567,410	+		GFF3524	0.48	-1.6
3,567,410	+		GFF3524	0.48	+0.1
3,567,410	+		GFF3524	0.48	-2.8
3,567,418	-		GFF3524	0.48	+0.9
3,567,418	-		GFF3524	0.48	-0.3
3,567,418	-		GFF3524	0.48	+0.8
3,567,418	-		GFF3524	0.48	-1.8
3,567,418	-		GFF3524	0.48	-0.1
3,567,418	-		GFF3524	0.48	-0.1
3,567,418	-		GFF3524	0.48	+0.7
3,567,427	+		GFF3524	0.49	-1.2
3,567,428	-		GFF3524	0.49	+0.7
3,567,438	-		GFF3524	0.49	-0.7
3,567,443	+		GFF3524	0.50	+0.2
3,567,443	+		GFF3524	0.50	+0.4
3,567,448	+		GFF3524	0.50	-0.3
3,567,458	+		GFF3524	0.50	-1.9
3,567,458	+		GFF3524	0.50	-0.5
3,567,458	+		GFF3524	0.50	+0.0
3,567,458	+		GFF3524	0.50	-0.5
3,567,458	+		GFF3524	0.50	-2.0
3,567,466	-		GFF3524	0.51	-1.7
3,567,476	+		GFF3524	0.52	-0.6
3,567,476	+		GFF3524	0.52	-0.4
3,567,484	-		GFF3524	0.52	+0.7
3,567,532	+		GFF3524	0.55	-0.8
3,567,629	-		GFF3524	0.60	+0.0
3,567,643	-		GFF3524	0.61	-0.1
3,567,647	-		GFF3524	0.61	-0.7
3,567,647	-		GFF3524	0.61	+0.6
3,567,647	-		GFF3524	0.61	-1.3
3,567,654	+		GFF3524	0.62	-1.0
3,567,662	-		GFF3524	0.62	-0.6
3,567,728	+		GFF3524	0.66	+0.3
3,567,728	+		GFF3524	0.66	-0.0
3,567,736	-		GFF3524	0.67	-1.4
3,567,772	-		GFF3524	0.69	-0.2
3,567,775	+		GFF3524	0.69	-0.9
3,567,775	+		GFF3524	0.69	-2.6
3,567,783	+		GFF3524	0.69	-2.0
3,567,783	+		GFF3524	0.69	+0.7
3,567,791	-		GFF3524	0.70	-0.2
3,567,807	-		GFF3524	0.71	+0.2
3,567,817	+		GFF3524	0.71	-0.2
3,567,830	+		GFF3524	0.72	-0.6
3,567,830	+		GFF3524	0.72	-0.7
3,567,830	+		GFF3524	0.72	+1.8
3,567,830	+		GFF3524	0.72	-1.4
3,567,830	-		GFF3524	0.72	+1.0
3,567,830	-		GFF3524	0.72	-2.5
3,567,830	-		GFF3524	0.72	-0.9
3,567,835	+		GFF3524	0.72	-2.4
3,567,835	+		GFF3524	0.72	-0.1
3,567,835	+		GFF3524	0.72	+0.5
3,567,835	+		GFF3524	0.72	-1.1
3,567,842	+		GFF3524	0.73	-1.7
3,567,842	+		GFF3524	0.73	-0.6
3,567,843	-		GFF3524	0.73	+0.3
3,567,843	-		GFF3524	0.73	+0.4
3,567,843	-		GFF3524	0.73	-0.3
3,567,843	-		GFF3524	0.73	+0.1
3,567,850	-		GFF3524	0.73	+0.2
3,567,850	-		GFF3524	0.73	-0.4
3,567,850	-		GFF3524	0.73	-0.1
3,567,850	-		GFF3524	0.73	-0.3
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3,568,169	+				+0.3
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3,568,180	+				-2.7
3,568,195	+				+1.1
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