Strain Fitness in Sphingobium sp. HT1-2 around GFF3490

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,525,732	+		GFF3489	0.14	+0.7
3,525,737	+		GFF3489	0.14	+0.9
3,525,742	+		GFF3489	0.15	-1.2
3,525,742	+		GFF3489	0.15	-0.1
3,525,749	+		GFF3489	0.16	+0.4
3,525,750	-		GFF3489	0.16	-0.6
3,525,755	-		GFF3489	0.16	-1.5
3,525,787	-		GFF3489	0.20	-0.7
3,525,793	-		GFF3489	0.21	-1.8
3,525,796	-		GFF3489	0.21	-0.1
3,525,796	-		GFF3489	0.21	+0.2
3,525,806	-		GFF3489	0.22	+0.8
3,525,810	+		GFF3489	0.23	+0.6
3,525,810	+		GFF3489	0.23	-2.0
3,525,810	+		GFF3489	0.23	-0.8
3,525,810	+		GFF3489	0.23	-0.3
3,525,810	+		GFF3489	0.23	+0.1
3,525,810	+		GFF3489	0.23	-0.0
3,525,810	+		GFF3489	0.23	+0.0
3,525,810	+		GFF3489	0.23	+0.0
3,525,810	+		GFF3489	0.23	-0.6
3,525,812	+		GFF3489	0.23	-1.2
3,525,812	+		GFF3489	0.23	-1.6
3,525,812	+		GFF3489	0.23	-2.3
3,525,812	+		GFF3489	0.23	-1.5
3,525,812	+		GFF3489	0.23	-0.5
3,525,812	+		GFF3489	0.23	+1.0
3,525,812	+		GFF3489	0.23	-0.7
3,525,812	+		GFF3489	0.23	-0.4
3,525,812	+		GFF3489	0.23	-0.7
3,525,812	+		GFF3489	0.23	-0.4
3,525,812	+		GFF3489	0.23	+0.5
3,525,812	+		GFF3489	0.23	+0.7
3,525,812	+		GFF3489	0.23	-1.3
3,525,812	+		GFF3489	0.23	+0.1
3,525,813	-		GFF3489	0.23	+0.1
3,525,813	-		GFF3489	0.23	-0.7
3,525,817	+		GFF3489	0.23	-0.9
3,525,817	+		GFF3489	0.23	-1.2
3,525,818	-		GFF3489	0.24	+0.5
3,525,818	-		GFF3489	0.24	+0.4
3,525,818	-		GFF3489	0.24	-1.0
3,525,818	-		GFF3489	0.24	-1.9
3,525,818	-		GFF3489	0.24	+1.3
3,525,818	-		GFF3489	0.24	-0.6
3,525,820	-		GFF3489	0.24	-0.3
3,525,820	-		GFF3489	0.24	-1.2
3,525,820	-		GFF3489	0.24	+0.1
3,525,820	-		GFF3489	0.24	+0.3
3,525,820	-		GFF3489	0.24	-0.2
3,525,820	-		GFF3489	0.24	-0.6
3,525,820	-		GFF3489	0.24	-0.1
3,525,820	-		GFF3489	0.24	-0.3
3,525,820	-		GFF3489	0.24	-0.9
3,525,820	-		GFF3489	0.24	-0.6
3,525,822	+		GFF3489	0.24	-2.2
3,525,864	+		GFF3489	0.29	+0.4
3,525,876	+		GFF3489	0.30	-1.5
3,525,876	+		GFF3489	0.30	-1.0
3,525,876	+		GFF3489	0.30	-1.8
3,525,876	+		GFF3489	0.30	-0.3
3,525,884	-		GFF3489	0.31	-0.7
3,525,884	-		GFF3489	0.31	-0.3
3,525,886	+		GFF3489	0.31	-0.6
3,525,886	+		GFF3489	0.31	-1.8
3,525,886	+		GFF3489	0.31	-0.6
3,525,894	+		GFF3489	0.32	-0.2
3,525,894	-		GFF3489	0.32	+0.2
3,525,917	+		GFF3489	0.35	-0.2
3,525,917	+		GFF3489	0.35	-0.2
3,525,924	+		GFF3489	0.35	+1.0
3,525,925	-		GFF3489	0.36	+1.6
3,525,947	-		GFF3489	0.38	-0.5
3,525,952	-		GFF3489	0.39	+0.7
3,525,964	+		GFF3489	0.40	+1.0
3,525,971	-		GFF3489	0.41	+0.3
3,525,973	+		GFF3489	0.41	-0.6
3,525,974	+		GFF3489	0.41	+1.7
3,525,979	+		GFF3489	0.42	+0.1
3,525,979	+		GFF3489	0.42	-0.3
3,525,982	-		GFF3489	0.42	-1.3
3,525,993	+		GFF3489	0.43	-1.9
3,525,993	+		GFF3489	0.43	-0.2
3,525,998	+		GFF3489	0.44	-0.3
3,526,001	-		GFF3489	0.44	-1.3
3,526,001	-		GFF3489	0.44	-1.3
3,526,006	-		GFF3489	0.45	+0.0
3,526,006	-		GFF3489	0.45	-0.8
3,526,006	-		GFF3489	0.45	-0.4
3,526,006	-		GFF3489	0.45	-0.8
3,526,034	+		GFF3489	0.48	-1.3
3,526,034	+		GFF3489	0.48	-0.2
3,526,034	+		GFF3489	0.48	+0.1
3,526,034	+		GFF3489	0.48	-1.2
3,526,042	-		GFF3489	0.49	-0.4
3,526,056	+		GFF3489	0.50	+0.2
3,526,081	-		GFF3489	0.53	-0.1
3,526,112	+		GFF3489	0.57	-1.7
3,526,112	+		GFF3489	0.57	-2.0
3,526,120	-		GFF3489	0.58	-1.6
3,526,120	-		GFF3489	0.58	+1.7
3,526,120	-		GFF3489	0.58	+0.4
3,526,120	-		GFF3489	0.58	+0.6
3,526,164	+		GFF3489	0.63	+0.4
3,526,171	-		GFF3489	0.63	-2.6
3,526,173	-		GFF3489	0.64	+0.2
3,526,193	+		GFF3489	0.66	-0.9
3,526,193	+		GFF3489	0.66	-0.3
3,526,201	-		GFF3489	0.67	+0.4
3,526,252	-		GFF3489	0.73	+1.1
3,526,321	+		GFF3489	0.80	-0.8
3,526,341	+		GFF3489	0.83	-1.4
3,526,341	+		GFF3489	0.83	-1.6
3,526,349	-		GFF3489	0.84	-0.6
3,526,358	+		GFF3489	0.85	-0.2
3,526,366	-		GFF3489	0.85	-2.9
3,526,426	+				+0.3
3,526,489	+				+0.2
3,526,496	-				-0.2
3,526,507	+				+0.5
3,526,507	+				-0.4
3,526,507	+				+0.3
3,526,507	+				+0.8
3,526,507	+				+0.1
3,526,507	+				-0.8
3,526,507	+				+0.4
3,526,507	+				-0.7
3,526,507	+				-1.8
3,526,507	+				-1.3
3,526,507	+				-0.3
3,526,515	-				+0.6
3,526,515	-				+0.1
3,526,515	-				+0.5
3,526,515	-				+1.6
3,526,528	-				-1.7
3,526,552	+				-0.1
3,526,567	-				+0.6
3,526,589	-				+0.5
3,526,590	+				-0.4
3,526,595	+				+0.2
3,526,595	+				-2.0
3,526,598	-				-0.4
3,526,619	+				-0.2
3,526,626	+				-0.5
3,526,632	-				+0.3
3,526,633	+				-0.9
3,526,634	+				-0.2
3,526,634	+				-0.8
3,526,641	-				-0.7
3,526,642	-				-0.9
3,526,642	-				-0.4
3,526,642	-				+0.5
3,526,654	-				-1.2
3,526,656	+				+0.4
3,526,656	+				+0.0
3,526,656	+				+0.0
3,526,656	+				+0.4
3,526,656	+				-2.2
3,526,656	+				-2.1
3,526,663	-				+0.8
3,526,664	-				-2.7
3,526,664	-				-0.3
3,526,664	-				-2.3
3,526,664	-				-1.4
3,526,681	+				-2.0
3,526,716	+				+0.0
3,526,717	-				-1.8
3,526,730	-				+1.8
3,526,730	-				-1.6
3,526,753	-				-0.6
3,526,773	-				+0.1
3,526,780	-				+0.5
3,526,780	-				-0.3
3,526,780	-				-0.5
3,526,782	+				-0.6
3,526,793	+				-1.9
3,526,793	+				-1.5
3,526,793	+				+0.2
3,526,793	+				-0.6
3,526,798	-				-0.5
3,526,801	-				+0.2
3,526,801	-				-0.0
3,526,801	-				+1.7
3,526,801	-				-0.2
3,526,801	-				+0.8
3,526,804	+				+0.4
3,526,804	+				+0.6
3,526,808	+				-0.5
3,526,812	-				-0.1
3,526,812	-				-2.9
3,526,812	-				-0.3
3,526,812	-				-0.4
3,526,816	-				+0.4
3,526,822	-				-0.8
3,526,823	+				-0.3
3,526,831	-				-0.2
3,526,869	-		GFF3490	0.14	+0.0
3,526,880	+		GFF3490	0.15	-1.0
3,526,880	+		GFF3490	0.15	+0.0
3,526,888	-		GFF3490	0.16	-1.1
3,526,919	+		GFF3490	0.19	-1.7
3,526,919	+		GFF3490	0.19	+0.4
3,526,919	+		GFF3490	0.19	-0.5
3,526,919	+		GFF3490	0.19	-0.3
3,526,924	+		GFF3490	0.19	+0.7
3,526,924	-		GFF3490	0.19	-3.3
3,526,927	-		GFF3490	0.19	-0.3
3,526,927	-		GFF3490	0.19	-1.2
3,526,943	+		GFF3490	0.21	-1.3
3,526,943	+		GFF3490	0.21	-0.5
3,526,965	+		GFF3490	0.23	-0.6
3,526,972	+		GFF3490	0.24	-0.4
3,526,978	-		GFF3490	0.24	-1.0
3,526,980	+		GFF3490	0.25	-0.2
3,526,985	-		GFF3490	0.25	-1.8
3,526,993	+		GFF3490	0.26	+0.2
3,527,028	+		GFF3490	0.29	+0.1
3,527,036	-		GFF3490	0.30	+0.7
3,527,048	+		GFF3490	0.31	-1.3
3,527,049	+		GFF3490	0.31	+0.6
3,527,056	-		GFF3490	0.32	-1.3
3,527,056	-		GFF3490	0.32	-1.2
3,527,063	+		GFF3490	0.33	-0.3
3,527,063	+		GFF3490	0.33	+0.7
3,527,071	-		GFF3490	0.34	+0.1
3,527,071	-		GFF3490	0.34	-1.1
3,527,078	-		GFF3490	0.34	-1.4
3,527,085	+		GFF3490	0.35	-1.8
3,527,085	+		GFF3490	0.35	-0.5
3,527,085	+		GFF3490	0.35	+1.2
3,527,092	-		GFF3490	0.36	-0.1
3,527,093	-		GFF3490	0.36	-2.5
3,527,093	-		GFF3490	0.36	+0.8
3,527,093	-		GFF3490	0.36	+1.6
3,527,109	+		GFF3490	0.37	+0.4
3,527,111	-		GFF3490	0.38	-0.2
3,527,116	-		GFF3490	0.38	+0.9
3,527,117	-		GFF3490	0.38	+0.5
3,527,117	-		GFF3490	0.38	+0.8
3,527,117	-		GFF3490	0.38	+0.4
3,527,127	-		GFF3490	0.39	+1.5
3,527,142	+		GFF3490	0.41	-0.3
3,527,160	+		GFF3490	0.42	+0.8
3,527,162	-		GFF3490	0.43	-0.3
3,527,170	+		GFF3490	0.43	-1.9
3,527,170	+		GFF3490	0.43	+1.1
3,527,170	+		GFF3490	0.43	-2.0
3,527,175	+		GFF3490	0.44	-0.1
3,527,182	-		GFF3490	0.45	+0.8
3,527,218	+		GFF3490	0.48	+1.6
3,527,220	-		GFF3490	0.48	-0.4
3,527,226	-		GFF3490	0.49	+0.2
3,527,230	-		GFF3490	0.49	-1.5
3,527,233	+		GFF3490	0.50	-0.0
3,527,237	+		GFF3490	0.50	-0.5
3,527,243	+		GFF3490	0.51	-0.5
3,527,246	-		GFF3490	0.51	-0.8
3,527,246	-		GFF3490	0.51	+0.9
3,527,246	-		GFF3490	0.51	-1.4
3,527,246	-		GFF3490	0.51	+0.1
3,527,262	-		GFF3490	0.53	-0.2
3,527,266	+		GFF3490	0.53	-2.1
3,527,271	+		GFF3490	0.53	+0.6
3,527,279	-		GFF3490	0.54	-0.1
3,527,308	-		GFF3490	0.57	-1.7
3,527,315	+		GFF3490	0.58	+0.7
3,527,315	+		GFF3490	0.58	+0.6
3,527,315	-		GFF3490	0.58	+0.6
3,527,323	-		GFF3490	0.59	-0.2
3,527,323	-		GFF3490	0.59	+0.1
3,527,328	-		GFF3490	0.59	+0.0
3,527,338	-		GFF3490	0.60	-0.9
3,527,356	+		GFF3490	0.62	-0.1
3,527,384	+		GFF3490	0.65	-0.6
3,527,386	+		GFF3490	0.65	+0.2
3,527,387	-		GFF3490	0.65	-2.8
3,527,392	-		GFF3490	0.65	+0.9
3,527,417	-		GFF3490	0.68	-0.6
3,527,429	-		GFF3490	0.69	-0.7
3,527,434	-		GFF3490	0.70	+0.2
3,527,462	+		GFF3490	0.72	-0.2
3,527,469	-		GFF3490	0.73	+1.1
3,527,479	-		GFF3490	0.74	-0.3
3,527,482	+		GFF3490	0.74	+0.3
3,527,490	+		GFF3490	0.75	+1.6
3,527,490	-		GFF3490	0.75	+0.0
3,527,490	-		GFF3490	0.75	+0.6
3,527,498	-		GFF3490	0.76	-1.2
3,527,498	-		GFF3490	0.76	+0.4
3,527,499	-		GFF3490	0.76	+0.7
3,527,505	-		GFF3490	0.77	-1.2
3,527,509	-		GFF3490	0.77	-1.2
3,527,520	-		GFF3490	0.78	-1.1
3,527,536	+		GFF3490	0.80	-0.3
3,527,536	+		GFF3490	0.80	-2.3
3,527,536	+		GFF3490	0.80	-1.6
3,527,539	-		GFF3490	0.80	+1.2
3,527,544	-		GFF3490	0.80	+0.9
3,527,544	-		GFF3490	0.80	-1.7
3,527,544	-		GFF3490	0.80	-0.8
3,527,589	+		GFF3490	0.85	+1.3
3,527,589	+		GFF3490	0.85	+0.7
3,527,589	+		GFF3490	0.85	-1.9
3,527,589	+		GFF3490	0.85	+1.4
3,527,589	+		GFF3490	0.85	-1.2
3,527,589	+		GFF3490	0.85	+0.7
3,527,589	+		GFF3490	0.85	-1.7
3,527,589	+		GFF3490	0.85	-2.5
3,527,592	-		GFF3490	0.85	+0.3
3,527,597	-		GFF3490	0.86	-0.1
3,527,597	-		GFF3490	0.86	-0.6
3,527,597	-		GFF3490	0.86	+0.4
3,527,597	-		GFF3490	0.86	-1.0
3,527,597	-		GFF3490	0.86	-0.5
3,527,597	-		GFF3490	0.86	+0.1
3,527,597	-		GFF3490	0.86	-0.8
3,527,597	-		GFF3490	0.86	+0.6
3,527,632	+		GFF3490	0.89	-0.2
3,527,642	+				+0.3
3,527,650	-				-0.2
3,527,651	+				+0.5
3,527,656	+				-1.6
3,527,656	+				+0.2
3,527,668	+				-0.0
3,527,670	+				-0.5
3,527,675	+				-0.3
3,527,682	-				+0.8
3,527,735	+				-1.8
3,527,735	+				-0.8
3,527,738	-				-0.0
3,527,738	-				-1.2
3,527,738	-				+0.2
3,527,738	-				-0.3
3,527,743	-				-0.0
3,527,743	-				-2.3
3,527,743	-				-0.3
3,527,743	-				+0.8
3,527,743	-				-1.5
3,527,743	-				-0.1
3,527,743	-				+0.6
3,527,768	+				-0.7
3,527,768	+				-1.4
3,527,768	+				+0.5
3,527,775	+				+0.6
3,527,775	+				-0.6
3,527,775	+				-0.4
3,527,776	-				-0.3
3,527,776	-				-1.1
3,527,783	-				-0.7
3,527,784	-				-0.5
3,527,815	+				-2.1
3,527,823	+				+0.1
3,527,844	+				-0.3
3,527,849	+				+0.5
3,527,849	+				-1.3
3,527,849	+				-0.8
3,527,857	-				+0.3
3,527,857	-				-2.1
3,527,904	+		GFF3491	0.10	-0.9
3,527,912	-		GFF3491	0.12	-1.5
3,527,912	-		GFF3491	0.12	-0.3
3,527,916	-		GFF3491	0.13	-0.6
3,527,918	+		GFF3491	0.13	-1.3
3,527,927	+		GFF3491	0.15	-0.8
3,527,935	-		GFF3491	0.17	-1.7
3,527,959	+		GFF3491	0.21	-2.3
3,527,961	+		GFF3491	0.22	-0.8
3,527,961	+		GFF3491	0.22	+0.9
3,527,961	+		GFF3491	0.22	+0.2
3,527,961	+		GFF3491	0.22	-0.8
3,527,961	+		GFF3491	0.22	+0.7
3,527,961	+		GFF3491	0.22	+0.3
3,527,961	+		GFF3491	0.22	+0.1
3,527,961	+		GFF3491	0.22	-1.6
3,527,961	+		GFF3491	0.22	-0.6
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3,528,284	-		GFF3491	0.88	-1.6
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3,528,310	+				-0.3
3,528,310	-				-0.0
3,528,365	-				-0.1
3,528,365	-				-1.8
3,528,365	-				-0.2
3,528,365	-				-1.4
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3,528,395	+				-1.4
3,528,395	+				+0.5
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3,528,395	+				-0.2
3,528,395	+				-2.2
3,528,395	+				-0.8
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3,528,403	-				-1.3
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3,528,405	-				-1.2
3,528,405	-				+0.1
3,528,405	-				+0.5
3,528,405	-				+1.1
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3,528,447	+				-1.1
3,528,449	-				+1.3
3,528,452	+				-0.9
3,528,455	-				+0.5
3,528,455	-				+0.0
3,528,455	-				-2.2
3,528,462	+				+1.2
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3,528,470	-				-1.5
3,528,484	-				-2.9
3,528,484	-				+0.2
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3,528,579	+				-1.2
3,528,587	+				-1.8
3,528,589	+				-1.3
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3,528,730	+		GFF3492	0.20	+1.1
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