Strain Fitness in Sphingobium sp. HT1-2 around GFF3468

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,508,993	-				-0.5
3,509,005	+				-1.4
3,509,005	+				-0.0
3,509,031	+				-0.1
3,509,056	+				-2.0
3,509,084	+				+0.8
3,509,084	+				-0.9
3,509,095	+				+0.7
3,509,095	+				-1.6
3,509,097	-				-0.4
3,509,110	+		GFF3467	0.11	+0.2
3,509,145	+		GFF3467	0.15	-2.7
3,509,145	+		GFF3467	0.15	+0.7
3,509,145	+		GFF3467	0.15	+0.7
3,509,145	+		GFF3467	0.15	-0.6
3,509,145	+		GFF3467	0.15	+1.2
3,509,145	+		GFF3467	0.15	-1.7
3,509,145	+		GFF3467	0.15	-1.1
3,509,145	+		GFF3467	0.15	-0.1
3,509,145	+		GFF3467	0.15	-0.1
3,509,145	+		GFF3467	0.15	+1.5
3,509,145	+		GFF3467	0.15	-1.8
3,509,145	+		GFF3467	0.15	+0.0
3,509,145	+		GFF3467	0.15	-0.6
3,509,150	+		GFF3467	0.16	-1.5
3,509,150	+		GFF3467	0.16	+0.2
3,509,150	+		GFF3467	0.16	-0.1
3,509,150	+		GFF3467	0.16	+1.2
3,509,150	+		GFF3467	0.16	+0.0
3,509,150	+		GFF3467	0.16	+0.2
3,509,150	+		GFF3467	0.16	+0.4
3,509,153	-		GFF3467	0.16	-0.2
3,509,153	-		GFF3467	0.16	-1.3
3,509,153	-		GFF3467	0.16	+0.2
3,509,153	-		GFF3467	0.16	+0.3
3,509,153	-		GFF3467	0.16	-0.3
3,509,153	-		GFF3467	0.16	+0.1
3,509,153	-		GFF3467	0.16	-0.2
3,509,153	-		GFF3467	0.16	+0.0
3,509,155	+		GFF3467	0.16	+0.9
3,509,158	-		GFF3467	0.16	+0.1
3,509,158	-		GFF3467	0.16	-1.0
3,509,158	-		GFF3467	0.16	-0.0
3,509,164	+		GFF3467	0.17	-0.4
3,509,164	+		GFF3467	0.17	+0.2
3,509,175	+		GFF3467	0.18	+1.0
3,509,179	-		GFF3467	0.19	+0.7
3,509,183	-		GFF3467	0.19	-0.5
3,509,186	+		GFF3467	0.19	-0.7
3,509,187	-		GFF3467	0.20	+0.3
3,509,194	-		GFF3467	0.20	-1.5
3,509,198	+		GFF3467	0.21	-0.1
3,509,198	+		GFF3467	0.21	-1.2
3,509,206	-		GFF3467	0.22	-1.0
3,509,206	-		GFF3467	0.22	-2.2
3,509,206	-		GFF3467	0.22	-1.2
3,509,206	-		GFF3467	0.22	-0.0
3,509,206	-		GFF3467	0.22	+0.2
3,509,206	-		GFF3467	0.22	-1.2
3,509,250	+		GFF3467	0.26	-1.2
3,509,253	-		GFF3467	0.27	-0.7
3,509,255	+		GFF3467	0.27	+0.7
3,509,255	+		GFF3467	0.27	-1.3
3,509,273	-		GFF3467	0.29	+0.9
3,509,289	+		GFF3467	0.31	+1.0
3,509,289	+		GFF3467	0.31	+0.6
3,509,302	-		GFF3467	0.32	+2.0
3,509,302	-		GFF3467	0.32	+0.2
3,509,381	+		GFF3467	0.41	+0.1
3,509,394	-		GFF3467	0.42	+1.1
3,509,395	-		GFF3467	0.42	-0.5
3,509,407	+		GFF3467	0.44	-0.6
3,509,407	+		GFF3467	0.44	-0.8
3,509,422	-		GFF3467	0.45	+0.8
3,509,484	-		GFF3467	0.52	+0.4
3,509,485	-		GFF3467	0.52	-1.1
3,509,506	-		GFF3467	0.54	-1.3
3,509,506	-		GFF3467	0.54	-1.8
3,509,506	-		GFF3467	0.54	-0.7
3,509,511	-		GFF3467	0.55	+0.3
3,509,516	-		GFF3467	0.56	-0.4
3,509,537	-		GFF3467	0.58	+0.3
3,509,537	-		GFF3467	0.58	-1.1
3,509,559	-		GFF3467	0.60	-1.1
3,509,561	+		GFF3467	0.60	-0.9
3,509,561	+		GFF3467	0.60	+1.1
3,509,561	+		GFF3467	0.60	-1.8
3,509,569	+		GFF3467	0.61	-0.9
3,509,569	-		GFF3467	0.61	+0.1
3,509,569	-		GFF3467	0.61	-0.4
3,509,612	+		GFF3467	0.66	+1.0
3,509,620	-		GFF3467	0.67	-0.6
3,509,630	-		GFF3467	0.68	+1.3
3,509,636	+		GFF3467	0.69	+0.0
3,509,636	+		GFF3467	0.69	-0.8
3,509,644	-		GFF3467	0.70	-0.5
3,509,646	+		GFF3467	0.70	-1.5
3,509,659	+		GFF3467	0.71	-1.7
3,509,664	+		GFF3467	0.72	+0.3
3,509,666	-		GFF3467	0.72	+0.0
3,509,695	+		GFF3467	0.75	+1.2
3,509,695	+		GFF3467	0.75	-0.8
3,509,695	+		GFF3467	0.75	-0.3
3,509,695	+		GFF3467	0.75	-1.8
3,509,695	+		GFF3467	0.75	-1.1
3,509,695	+		GFF3467	0.75	-1.0
3,509,695	+		GFF3467	0.75	-0.9
3,509,703	-		GFF3467	0.76	+1.0
3,509,703	-		GFF3467	0.76	-0.5
3,509,723	+		GFF3467	0.78	-1.7
3,509,736	-		GFF3467	0.80	-0.5
3,509,743	+		GFF3467	0.80	-0.6
3,509,743	+		GFF3467	0.80	-1.1
3,509,743	+		GFF3467	0.80	-1.2
3,509,748	+		GFF3467	0.81	-1.4
3,509,753	+		GFF3467	0.81	+0.7
3,509,753	+		GFF3467	0.81	+0.6
3,509,753	+		GFF3467	0.81	-0.0
3,509,761	-		GFF3467	0.82	+1.0
3,509,761	-		GFF3467	0.82	-1.7
3,509,766	-		GFF3467	0.83	+0.2
3,509,767	-		GFF3467	0.83	+0.6
3,509,841	+				-0.7
3,509,844	-				-1.3
3,509,848	+				-0.3
3,509,848	+				-0.2
3,509,848	+				-1.6
3,509,853	+				+0.3
3,509,853	+				+0.6
3,509,853	+				-2.3
3,509,856	-				-1.1
3,509,856	-				+0.0
3,509,861	-				-0.6
3,509,861	-				-0.1
3,509,861	-				-1.2
3,509,861	-				+0.2
3,509,861	-				+0.2
3,509,861	-				+1.4
3,509,861	-				+0.9
3,509,866	+				+0.4
3,509,872	+				+1.1
3,509,873	+				-1.6
3,509,873	+				+0.3
3,509,878	+				-1.3
3,509,878	+				-1.8
3,509,878	+				+0.2
3,509,878	+				-2.0
3,509,881	-				-0.5
3,509,886	-				-1.0
3,509,886	-				-0.3
3,509,886	-				-0.4
3,509,886	-				-1.6
3,509,888	+				-1.0
3,509,896	-				-2.6
3,509,896	-				-0.6
3,509,899	+				+1.1
3,509,907	-				-1.1
3,509,931	-				+0.4
3,509,939	-				-2.6
3,509,947	-				-0.3
3,509,954	+				-1.1
3,509,979	+				-0.5
3,509,996	+				-0.4
3,509,996	+				-0.3
3,509,996	-				-0.3
3,509,997	-				-0.9
3,510,004	-				+0.7
3,510,028	+				-1.0
3,510,076	-		GFF3468	0.16	+0.5
3,510,076	-		GFF3468	0.16	-1.9
3,510,081	+		GFF3468	0.17	-0.3
3,510,081	+		GFF3468	0.17	+0.7
3,510,089	-		GFF3468	0.18	-0.8
3,510,115	+		GFF3468	0.23	-1.4
3,510,137	+		GFF3468	0.27	+0.4
3,510,138	-		GFF3468	0.28	-1.7
3,510,146	+		GFF3468	0.29	-0.5
3,510,163	+		GFF3468	0.32	+0.1
3,510,163	+		GFF3468	0.32	-1.1
3,510,163	+		GFF3468	0.32	-1.8
3,510,168	+		GFF3468	0.33	-1.5
3,510,171	-		GFF3468	0.34	-0.6
3,510,171	-		GFF3468	0.34	-2.1
3,510,171	-		GFF3468	0.34	-0.3
3,510,171	-		GFF3468	0.34	+1.0
3,510,171	-		GFF3468	0.34	-2.6
3,510,171	-		GFF3468	0.34	-0.3
3,510,176	-		GFF3468	0.35	+0.2
3,510,203	+		GFF3468	0.40	-2.5
3,510,211	-		GFF3468	0.42	-0.1
3,510,211	-		GFF3468	0.42	+0.0
3,510,212	+		GFF3468	0.42	-2.8
3,510,238	-		GFF3468	0.47	-0.6
3,510,244	+		GFF3468	0.48	-1.9
3,510,247	-		GFF3468	0.48	+0.4
3,510,252	-		GFF3468	0.49	-0.0
3,510,252	-		GFF3468	0.49	-0.6
3,510,252	-		GFF3468	0.49	-1.5
3,510,252	-		GFF3468	0.49	-0.9
3,510,280	+		GFF3468	0.55	-1.0
3,510,280	+		GFF3468	0.55	-0.2
3,510,282	-		GFF3468	0.55	-0.3
3,510,282	-		GFF3468	0.55	-0.3
3,510,288	-		GFF3468	0.56	-0.7
3,510,290	+		GFF3468	0.57	-1.6
3,510,290	-		GFF3468	0.57	-0.4
3,510,313	+		GFF3468	0.61	-1.0
3,510,321	-		GFF3468	0.62	+0.8
3,510,321	-		GFF3468	0.62	-0.4
3,510,344	-		GFF3468	0.67	-0.1
3,510,359	+		GFF3468	0.70	-0.5
3,510,365	+		GFF3468	0.71	+1.1
3,510,366	+		GFF3468	0.71	-1.2
3,510,367	-		GFF3468	0.71	-0.1
3,510,373	-		GFF3468	0.72	-1.1
3,510,383	+		GFF3468	0.74	+0.8
3,510,390	+		GFF3468	0.76	+0.2
3,510,390	+		GFF3468	0.76	-1.1
3,510,393	-		GFF3468	0.76	+1.2
3,510,398	-		GFF3468	0.77	-0.2
3,510,425	+		GFF3468	0.82	+0.6
3,510,428	-		GFF3468	0.83	-2.3
3,510,435	-		GFF3468	0.84	-0.7
3,510,435	-		GFF3468	0.84	+0.5
3,510,450	-		GFF3468	0.87	+0.7
3,510,465	-				-1.5
3,510,468	-				+1.6
3,510,502	+				-0.8
3,510,502	+				-0.5
3,510,512	+				+0.9
3,510,519	-				+1.1
3,510,519	-				-0.9
3,510,547	-				-0.9
3,510,599	-				-0.5
3,510,600	-				+0.1
3,510,619	-				-1.3