Strain Fitness in Sphingobium sp. HT1-2 around GFF3462

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,501,848	+		GFF3461	0.42	-0.2
3,501,848	+		GFF3461	0.42	+0.6
3,501,848	+		GFF3461	0.42	-0.2
3,501,848	+		GFF3461	0.42	-1.3
3,501,851	+		GFF3461	0.42	-0.0
3,501,851	+		GFF3461	0.42	-0.5
3,501,856	-		GFF3461	0.42	+0.6
3,501,859	-		GFF3461	0.43	+0.0
3,501,859	-		GFF3461	0.43	+0.8
3,501,861	-		GFF3461	0.43	-0.1
3,501,899	+		GFF3461	0.45	-0.3
3,501,971	+		GFF3461	0.50	+1.0
3,501,993	-		GFF3461	0.51	-1.8
3,502,018	+		GFF3461	0.53	-1.1
3,502,020	+		GFF3461	0.53	+0.3
3,502,063	+		GFF3461	0.56	-0.0
3,502,063	+		GFF3461	0.56	-0.1
3,502,071	-		GFF3461	0.57	-0.7
3,502,071	-		GFF3461	0.57	+1.0
3,502,071	-		GFF3461	0.57	-0.1
3,502,129	+		GFF3461	0.60	+0.0
3,502,132	-		GFF3461	0.61	+0.1
3,502,134	+		GFF3461	0.61	-1.4
3,502,142	-		GFF3461	0.61	+0.8
3,502,142	-		GFF3461	0.61	+0.1
3,502,142	-		GFF3461	0.61	+0.4
3,502,148	+		GFF3461	0.62	-1.0
3,502,156	-		GFF3461	0.62	-0.4
3,502,167	+		GFF3461	0.63	-0.6
3,502,175	-		GFF3461	0.63	-0.3
3,502,203	-		GFF3461	0.65	-0.2
3,502,226	+		GFF3461	0.67	-0.2
3,502,226	+		GFF3461	0.67	-0.3
3,502,227	-		GFF3461	0.67	-1.9
3,502,232	+		GFF3461	0.67	-1.5
3,502,234	-		GFF3461	0.67	+0.4
3,502,234	-		GFF3461	0.67	-0.3
3,502,234	-		GFF3461	0.67	+0.8
3,502,242	-		GFF3461	0.68	-0.3
3,502,255	+		GFF3461	0.69	+0.5
3,502,261	+		GFF3461	0.69	+1.2
3,502,269	-		GFF3461	0.70	-1.8
3,502,283	-		GFF3461	0.70	+1.5
3,502,288	-		GFF3461	0.71	+0.7
3,502,293	-		GFF3461	0.71	-2.1
3,502,307	+		GFF3461	0.72	+0.2
3,502,341	-		GFF3461	0.74	-0.0
3,502,367	+		GFF3461	0.76	-0.3
3,502,378	+		GFF3461	0.77	+0.3
3,502,449	+		GFF3461	0.81	-1.3
3,502,457	-		GFF3461	0.82	-0.2
3,502,480	+		GFF3461	0.83	+0.6
3,502,488	-		GFF3461	0.84	-0.1
3,502,488	-		GFF3461	0.84	-0.3
3,502,488	-		GFF3461	0.84	+0.1
3,502,495	+		GFF3461	0.84	+0.5
3,502,497	+		GFF3461	0.85	-0.6
3,502,497	+		GFF3461	0.85	+0.1
3,502,502	+		GFF3461	0.85	-0.3
3,502,502	+		GFF3461	0.85	+0.7
3,502,502	+		GFF3461	0.85	-0.7
3,502,505	-		GFF3461	0.85	-2.5
3,502,505	-		GFF3461	0.85	-0.5
3,502,505	-		GFF3461	0.85	-1.3
3,502,505	-		GFF3461	0.85	-0.2
3,502,510	-		GFF3461	0.85	+1.2
3,502,510	-		GFF3461	0.85	+0.5
3,502,510	-		GFF3461	0.85	-1.5
3,502,510	-		GFF3461	0.85	-0.3
3,502,510	-		GFF3461	0.85	+0.8
3,502,524	+		GFF3461	0.86	-0.4
3,502,524	+		GFF3461	0.86	-1.3
3,502,525	+		GFF3461	0.86	-1.5
3,502,532	+		GFF3461	0.87	-1.8
3,502,532	+		GFF3461	0.87	+0.5
3,502,532	+		GFF3461	0.87	-0.7
3,502,532	+		GFF3461	0.87	+1.3
3,502,533	-		GFF3461	0.87	-0.2
3,502,533	-		GFF3461	0.87	-2.1
3,502,533	-		GFF3461	0.87	-0.3
3,502,533	-		GFF3461	0.87	-1.8
3,502,533	-		GFF3461	0.87	+0.3
3,502,540	-		GFF3461	0.87	+0.4
3,502,550	-		GFF3461	0.88	-0.9
3,502,601	-				-0.9
3,502,609	-				+1.0
3,502,614	-				-2.3
3,502,648	-				-0.5
3,502,650	-				-2.9
3,502,650	-				+0.1
3,502,656	+				-0.8
3,502,661	+				-0.5
3,502,664	-				+1.3
3,502,664	-				+0.9
3,502,664	-				-1.6
3,502,666	+				-0.3
3,502,666	+				+0.5
3,502,669	-				+0.2
3,502,669	-				-0.9
3,502,674	-				-0.5
3,502,708	-				-0.3
3,502,717	-				-0.1
3,502,731	+				+0.1
3,502,731	+				-0.3
3,502,739	-				+0.1
3,502,761	-				-0.6
3,502,781	-				+0.4
3,502,788	-				-0.1
3,502,788	-				-0.3
3,502,830	+				-1.1
3,502,830	-				-1.1
3,502,835	+				+1.5
3,502,838	-				-1.5
3,502,838	-				-1.4
3,502,838	-				+0.2
3,502,838	-				-0.2
3,502,841	+				+0.3
3,502,875	+				-1.8
3,502,875	+				-0.6
3,502,883	-				-0.3
3,502,883	-				+0.5
3,502,883	-				+0.0
3,502,883	-				-2.2
3,502,883	-				-1.9
3,502,886	-				+1.6
3,502,886	-				-0.4
3,502,886	-				+0.2
3,502,897	+				+1.0
3,502,919	+				-0.2
3,502,934	+				+1.0
3,502,937	-		GFF3462	0.10	-0.5
3,502,941	+		GFF3462	0.11	+0.9
3,502,942	-		GFF3462	0.11	+0.7
3,502,944	+		GFF3462	0.11	-0.1
3,502,947	-		GFF3462	0.11	+0.2
3,502,952	-		GFF3462	0.12	-0.1
3,502,988	+		GFF3462	0.16	+0.9
3,503,013	+		GFF3462	0.19	-0.4
3,503,017	+		GFF3462	0.19	-0.9
3,503,025	-		GFF3462	0.20	+0.5
3,503,031	+		GFF3462	0.21	+0.2
3,503,048	+		GFF3462	0.23	-1.4
3,503,056	-		GFF3462	0.24	-0.7
3,503,056	-		GFF3462	0.24	-0.6
3,503,073	+		GFF3462	0.25	+0.1
3,503,073	-		GFF3462	0.25	-0.2
3,503,077	+		GFF3462	0.26	+2.2
3,503,081	-		GFF3462	0.26	-1.4
3,503,081	-		GFF3462	0.26	+0.0
3,503,100	+		GFF3462	0.28	-0.0
3,503,105	+		GFF3462	0.29	+0.4
3,503,105	+		GFF3462	0.29	+0.7
3,503,105	+		GFF3462	0.29	-0.2
3,503,105	+		GFF3462	0.29	-0.9
3,503,105	+		GFF3462	0.29	-0.2
3,503,105	+		GFF3462	0.29	+1.0
3,503,105	+		GFF3462	0.29	+0.8
3,503,105	+		GFF3462	0.29	-0.5
3,503,105	+		GFF3462	0.29	-0.7
3,503,105	+		GFF3462	0.29	+0.7
3,503,105	+		GFF3462	0.29	-1.6
3,503,105	+		GFF3462	0.29	+0.3
3,503,105	+		GFF3462	0.29	-0.3
3,503,105	+		GFF3462	0.29	+1.0
3,503,105	+		GFF3462	0.29	+0.1
3,503,105	+		GFF3462	0.29	+0.2
3,503,113	-		GFF3462	0.30	-0.9
3,503,113	-		GFF3462	0.30	+1.2
3,503,113	-		GFF3462	0.30	-0.4
3,503,113	-		GFF3462	0.30	+1.3
3,503,113	-		GFF3462	0.30	+0.7
3,503,113	-		GFF3462	0.30	+0.8
3,503,113	-		GFF3462	0.30	+0.5
3,503,113	-		GFF3462	0.30	-0.4
3,503,113	-		GFF3462	0.30	-1.9
3,503,113	-		GFF3462	0.30	+0.4
3,503,113	-		GFF3462	0.30	-0.3
3,503,113	-		GFF3462	0.30	-1.1
3,503,113	-		GFF3462	0.30	-2.7
3,503,113	-		GFF3462	0.30	+0.0
3,503,113	-		GFF3462	0.30	+0.5
3,503,113	-		GFF3462	0.30	-0.9
3,503,119	+		GFF3462	0.31	+0.8
3,503,137	-		GFF3462	0.33	-0.2
3,503,137	-		GFF3462	0.33	-0.0
3,503,137	-		GFF3462	0.33	-1.3
3,503,137	-		GFF3462	0.33	-0.0
3,503,137	-		GFF3462	0.33	+0.2
3,503,137	-		GFF3462	0.33	+0.4
3,503,137	-		GFF3462	0.33	+0.8
3,503,137	-		GFF3462	0.33	+0.1
3,503,153	-		GFF3462	0.34	+0.2
3,503,153	-		GFF3462	0.34	-0.3
3,503,159	-		GFF3462	0.35	+0.3
3,503,161	+		GFF3462	0.35	+0.3
3,503,169	-		GFF3462	0.36	+0.1
3,503,221	+		GFF3462	0.42	+0.1
3,503,249	+		GFF3462	0.45	-0.3
3,503,262	-		GFF3462	0.47	+0.5
3,503,265	+		GFF3462	0.47	-1.2
3,503,265	+		GFF3462	0.47	+0.6
3,503,273	-		GFF3462	0.48	+0.7
3,503,273	-		GFF3462	0.48	-2.0
3,503,273	-		GFF3462	0.48	-1.8
3,503,273	-		GFF3462	0.48	+0.1
3,503,273	-		GFF3462	0.48	-0.3
3,503,273	-		GFF3462	0.48	-0.8
3,503,273	-		GFF3462	0.48	+0.9
3,503,281	-		GFF3462	0.49	-0.3
3,503,283	+		GFF3462	0.49	+0.8
3,503,287	+		GFF3462	0.50	-0.5
3,503,291	-		GFF3462	0.50	-0.9
3,503,296	-		GFF3462	0.51	-2.2
3,503,324	+		GFF3462	0.54	-2.2
3,503,329	+		GFF3462	0.54	+0.0
3,503,417	+		GFF3462	0.64	+0.1
3,503,417	+		GFF3462	0.64	+0.3
3,503,425	-		GFF3462	0.65	-0.6
3,503,427	+		GFF3462	0.65	-0.4
3,503,448	+		GFF3462	0.68	+1.8
3,503,459	-		GFF3462	0.69	+0.2
3,503,468	-		GFF3462	0.70	-0.3
3,503,476	-		GFF3462	0.71	+1.0
3,503,478	-		GFF3462	0.71	-0.3
3,503,500	+		GFF3462	0.74	+1.1
3,503,510	+		GFF3462	0.75	-1.0
3,503,515	-		GFF3462	0.75	+0.5
3,503,515	-		GFF3462	0.75	-0.3
3,503,515	-		GFF3462	0.75	+0.5
3,503,518	-		GFF3462	0.76	-0.5
3,503,518	-		GFF3462	0.76	-1.2
3,503,531	+		GFF3462	0.77	+0.3
3,503,531	+		GFF3462	0.77	+0.2
3,503,539	-		GFF3462	0.78	-0.5
3,503,539	-		GFF3462	0.78	+0.0
3,503,546	+		GFF3462	0.79	+0.6
3,503,548	+		GFF3462	0.79	-1.0
3,503,607	+		GFF3462	0.86	+0.4
3,503,615	-		GFF3462	0.86	+0.3
3,503,625	-		GFF3462	0.88	+1.1
3,503,659	+				+1.0
3,503,667	-				+0.1
3,503,728	+				-0.8
3,503,728	+				-1.3
3,503,731	-				-0.1
3,503,731	-				+0.7
3,503,731	-				+0.0
3,503,733	+				-2.1
3,503,736	-				-0.6
3,503,736	-				+0.9
3,503,736	-				+0.6
3,503,749	+				+0.8
3,503,757	-				-0.1
3,503,758	+				+0.4
3,503,789	+				-0.3
3,503,789	+				+1.2
3,503,789	+				-0.3
3,503,789	+				-1.0
3,503,789	+				-0.7
3,503,789	+				-0.7
3,503,789	+				+0.1
3,503,789	+				+1.5
3,503,794	+				-1.6
3,503,797	-				-1.8
3,503,797	-				-0.9
3,503,797	-				+0.2
3,503,797	-				+1.0
3,503,797	-				-0.6
3,503,797	-				-0.5
3,503,797	-				-0.8
3,503,838	-				+0.8
3,503,850	+				-2.2
3,503,850	+				-0.6
3,503,850	+				-2.1
3,503,857	+				-1.0
3,503,858	-				+0.3
3,503,865	-				-0.6
3,503,888	+		GFF3463	0.10	-1.1
3,503,902	+		GFF3463	0.11	+0.7
3,503,905	+		GFF3463	0.11	+0.3
3,503,931	-		GFF3463	0.13	+1.5
3,503,931	-		GFF3463	0.13	-0.6
3,503,934	-		GFF3463	0.13	+0.7
3,503,949	-		GFF3463	0.14	-1.9
3,503,956	+		GFF3463	0.15	+0.6
3,503,982	+		GFF3463	0.16	+0.4
3,504,012	-		GFF3463	0.18	+0.1
3,504,021	+		GFF3463	0.19	-0.7
3,504,060	+		GFF3463	0.22	-1.2
3,504,067	-		GFF3463	0.22	-1.0
3,504,084	+		GFF3463	0.23	-1.9
3,504,087	-		GFF3463	0.23	-1.7
3,504,090	-		GFF3463	0.24	+0.3
3,504,092	-		GFF3463	0.24	-0.3
3,504,092	-		GFF3463	0.24	-0.6
3,504,107	+		GFF3463	0.25	-1.5
3,504,109	+		GFF3463	0.25	-0.6
3,504,115	-		GFF3463	0.25	-1.6
3,504,129	+		GFF3463	0.26	-1.8
3,504,144	-		GFF3463	0.27	-0.1
3,504,144	-		GFF3463	0.27	-0.2
3,504,152	-		GFF3463	0.28	-1.3
3,504,159	+		GFF3463	0.28	-0.8
3,504,172	-		GFF3463	0.29	-1.4
3,504,181	+		GFF3463	0.29	-0.5
3,504,189	+		GFF3463	0.30	-1.0
3,504,189	+		GFF3463	0.30	+0.1
3,504,189	+		GFF3463	0.30	-1.9
3,504,191	+		GFF3463	0.30	-0.1
3,504,191	+		GFF3463	0.30	+0.4
3,504,191	+		GFF3463	0.30	-0.7
3,504,197	-		GFF3463	0.31	-2.2
3,504,197	-		GFF3463	0.31	+1.0
3,504,199	-		GFF3463	0.31	+0.1
3,504,199	-		GFF3463	0.31	-2.1
3,504,199	-		GFF3463	0.31	-0.0
3,504,199	-		GFF3463	0.31	-0.8
3,504,204	-		GFF3463	0.31	-0.2
3,504,237	-		GFF3463	0.33	-1.6
3,504,259	-		GFF3463	0.35	-0.4
3,504,262	+		GFF3463	0.35	-1.6
3,504,270	+		GFF3463	0.35	-0.3
3,504,309	+		GFF3463	0.38	+0.1
3,504,312	-		GFF3463	0.38	-1.3
3,504,312	-		GFF3463	0.38	-0.6
3,504,327	+		GFF3463	0.39	+0.7
3,504,385	-		GFF3463	0.43	+0.6
3,504,407	+		GFF3463	0.44	-1.6
3,504,412	+		GFF3463	0.45	+1.0
3,504,412	+		GFF3463	0.45	+1.0
3,504,412	+		GFF3463	0.45	-0.3
3,504,412	+		GFF3463	0.45	-1.9
3,504,412	+		GFF3463	0.45	+0.6
3,504,412	+		GFF3463	0.45	-1.1
3,504,420	-		GFF3463	0.45	-1.1
3,504,420	-		GFF3463	0.45	-0.8
3,504,420	-		GFF3463	0.45	-0.1
3,504,420	-		GFF3463	0.45	-0.2
3,504,420	-		GFF3463	0.45	-1.7
3,504,420	-		GFF3463	0.45	+0.7
3,504,420	-		GFF3463	0.45	+0.6
3,504,420	-		GFF3463	0.45	+0.8
3,504,420	-		GFF3463	0.45	-0.9
3,504,420	-		GFF3463	0.45	-1.0
3,504,422	-		GFF3463	0.45	-1.1
3,504,429	+		GFF3463	0.46	+0.0
3,504,439	+		GFF3463	0.46	+0.1
3,504,439	+		GFF3463	0.46	-0.6
3,504,447	-		GFF3463	0.47	-0.8
3,504,479	-		GFF3463	0.49	-2.5
3,504,484	+		GFF3463	0.49	-0.6
3,504,508	+		GFF3463	0.51	-2.2
3,504,515	+		GFF3463	0.51	-1.6
3,504,515	+		GFF3463	0.51	+0.9
3,504,523	-		GFF3463	0.52	+0.5
3,504,527	+		GFF3463	0.52	-0.1
3,504,532	-		GFF3463	0.52	-0.5
3,504,560	+		GFF3463	0.54	+0.5
3,504,568	+		GFF3463	0.55	+0.8
3,504,581	+		GFF3463	0.56	+0.2
3,504,582	+		GFF3463	0.56	-0.1
3,504,647	+		GFF3463	0.60	-0.6
3,504,660	-		GFF3463	0.61	-2.3
3,504,670	-		GFF3463	0.61	-0.3
3,504,705	-		GFF3463	0.64	-1.5
3,504,712	-		GFF3463	0.64	-0.7
3,504,712	-		GFF3463	0.64	-0.8
3,504,731	-		GFF3463	0.65	-1.5