Strain Fitness in Sphingobium sp. HT1-2 around GFF3435

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,475,053	+				-1.0
3,475,053	+				-2.9
3,475,056	-				-0.2
3,475,061	+				-1.1
3,475,061	-				-1.2
3,475,065	+				-0.2
3,475,066	-				-1.8
3,475,069	-				-0.6
3,475,070	+				-0.4
3,475,070	+				+0.0
3,475,070	+				-1.6
3,475,070	+				-0.2
3,475,070	+				-0.6
3,475,071	+				-1.2
3,475,078	-				-1.4
3,475,078	-				-2.1
3,475,078	-				-2.0
3,475,078	-				-1.9
3,475,078	-				-1.6
3,475,080	+				-2.4
3,475,088	-				-1.9
3,475,099	-				-1.2
3,475,141	+				-1.9
3,475,303	-		GFF3434	0.19	-1.2
3,475,326	+		GFF3434	0.22	-1.2
3,475,326	+		GFF3434	0.22	-1.4
3,475,334	-		GFF3434	0.23	-1.6
3,475,533	-		GFF3434	0.48	-1.4
3,475,562	+		GFF3434	0.52	-0.8
3,475,606	-		GFF3434	0.57	-1.4
3,475,710	-		GFF3434	0.71	-1.9
3,475,749	+		GFF3434	0.76	-1.4
3,475,840	-		GFF3434	0.87	-1.8
3,475,860	+		GFF3434	0.90	-0.7
3,475,860	+		GFF3434	0.90	+0.6
3,475,860	+		GFF3434	0.90	-2.7
3,475,868	-				-2.2
3,475,868	-				-1.5
3,475,880	+				-1.8
3,475,880	+				-2.1
3,475,885	+				-2.2
3,475,885	+				-2.7
3,475,888	-				-1.5
3,475,888	-				-1.9
3,475,888	-				-1.6
3,475,890	+				+1.0
3,475,890	+				-1.3
3,475,893	-				-2.3
3,475,893	-				-2.6
3,475,893	-				-1.9
3,475,903	-				-1.9
3,475,903	-				-2.6
3,475,933	+				+0.7
3,475,941	-				-2.4
3,475,961	+				-0.2
3,475,983	+				-1.2
3,475,991	-				+0.2
3,475,992	+				+0.2
3,476,028	+				+0.4
3,476,028	+				-1.0
3,476,036	-				-0.0
3,476,036	-				+0.6
3,476,036	-				+0.7
3,476,039	+				+0.3
3,476,039	+				-0.7
3,476,039	+				+0.5
3,476,047	-				+0.1
3,476,052	-				+1.0
3,476,059	+				-0.9
3,476,074	+				-0.5
3,476,077	-				-0.9
3,476,077	-				-0.0
3,476,093	+				+0.6
3,476,093	+				-0.2
3,476,103	-				-0.8
3,476,107	+				-2.6
3,476,107	+				-0.3
3,476,112	+				+0.1
3,476,113	-				-0.9
3,476,115	-				-1.9
3,476,115	-				-2.8
3,476,115	-				-0.2
3,476,122	+		GFF3435	0.10	+0.5
3,476,122	+		GFF3435	0.10	-1.2
3,476,122	+		GFF3435	0.10	-0.6
3,476,122	+		GFF3435	0.10	-0.2
3,476,130	-		GFF3435	0.12	-1.2
3,476,139	-		GFF3435	0.13	-0.6
3,476,139	-		GFF3435	0.13	-1.6
3,476,139	-		GFF3435	0.13	+0.4
3,476,157	+		GFF3435	0.15	-0.6
3,476,157	+		GFF3435	0.15	+1.0
3,476,158	+		GFF3435	0.15	+0.6
3,476,158	+		GFF3435	0.15	-1.8
3,476,158	+		GFF3435	0.15	-0.2
3,476,166	-		GFF3435	0.16	-0.3
3,476,166	-		GFF3435	0.16	+0.3
3,476,166	-		GFF3435	0.16	-1.4
3,476,166	-		GFF3435	0.16	+0.0
3,476,166	-		GFF3435	0.16	-0.4
3,476,166	-		GFF3435	0.16	+0.0
3,476,184	-		GFF3435	0.19	+0.3
3,476,184	-		GFF3435	0.19	-0.6
3,476,189	-		GFF3435	0.19	-0.9
3,476,205	+		GFF3435	0.22	+0.6
3,476,209	+		GFF3435	0.22	-0.5
3,476,209	+		GFF3435	0.22	+1.1
3,476,225	+		GFF3435	0.24	+0.0
3,476,225	+		GFF3435	0.24	+0.2
3,476,230	+		GFF3435	0.25	-0.2
3,476,233	-		GFF3435	0.25	-1.9
3,476,236	+		GFF3435	0.26	+1.6
3,476,243	+		GFF3435	0.27	+0.0
3,476,243	+		GFF3435	0.27	+0.2
3,476,243	+		GFF3435	0.27	-1.6
3,476,243	+		GFF3435	0.27	+0.7
3,476,243	+		GFF3435	0.27	-0.6
3,476,243	+		GFF3435	0.27	-0.7
3,476,243	-		GFF3435	0.27	+1.4
3,476,243	-		GFF3435	0.27	+0.4
3,476,251	+		GFF3435	0.28	+0.3
3,476,251	-		GFF3435	0.28	+0.4
3,476,251	-		GFF3435	0.28	-0.5
3,476,253	+		GFF3435	0.28	-1.2
3,476,253	+		GFF3435	0.28	-0.1
3,476,253	+		GFF3435	0.28	-1.7
3,476,253	+		GFF3435	0.28	+0.6
3,476,261	-		GFF3435	0.29	-0.6
3,476,261	-		GFF3435	0.29	-0.0
3,476,261	-		GFF3435	0.29	+1.0
3,476,261	-		GFF3435	0.29	-1.0
3,476,268	+		GFF3435	0.30	-0.6
3,476,268	+		GFF3435	0.30	-0.7
3,476,276	-		GFF3435	0.31	+0.2
3,476,276	-		GFF3435	0.31	-0.1
3,476,284	-		GFF3435	0.32	-0.8
3,476,289	-		GFF3435	0.33	-1.6
3,476,313	+		GFF3435	0.36	-1.0
3,476,316	-		GFF3435	0.36	-1.1
3,476,334	+		GFF3435	0.39	-0.0
3,476,349	-		GFF3435	0.41	-1.9
3,476,364	+		GFF3435	0.43	-0.5
3,476,382	+		GFF3435	0.45	+1.1
3,476,388	-		GFF3435	0.46	-0.1
3,476,392	+		GFF3435	0.46	-1.4
3,476,399	-		GFF3435	0.47	-1.6
3,476,400	-		GFF3435	0.47	-0.4
3,476,400	-		GFF3435	0.47	-2.2
3,476,446	+		GFF3435	0.54	+0.8
3,476,446	+		GFF3435	0.54	-0.2
3,476,446	+		GFF3435	0.54	+1.4
3,476,446	+		GFF3435	0.54	-0.7
3,476,446	+		GFF3435	0.54	+0.1
3,476,446	+		GFF3435	0.54	-0.5
3,476,446	+		GFF3435	0.54	-0.3
3,476,446	+		GFF3435	0.54	-1.0
3,476,446	+		GFF3435	0.54	-2.1
3,476,446	+		GFF3435	0.54	+0.5
3,476,454	-		GFF3435	0.55	-1.5
3,476,454	-		GFF3435	0.55	+0.4
3,476,454	-		GFF3435	0.55	-1.1
3,476,454	-		GFF3435	0.55	-1.7
3,476,454	-		GFF3435	0.55	-2.3
3,476,454	-		GFF3435	0.55	-0.7
3,476,461	+		GFF3435	0.56	+0.3
3,476,461	+		GFF3435	0.56	-0.6
3,476,464	-		GFF3435	0.56	-2.4
3,476,464	-		GFF3435	0.56	-0.2
3,476,469	-		GFF3435	0.57	-1.7
3,476,480	-		GFF3435	0.58	+0.9
3,476,498	+		GFF3435	0.60	-0.2
3,476,498	+		GFF3435	0.60	+0.9
3,476,498	+		GFF3435	0.60	-0.0
3,476,506	-		GFF3435	0.61	-0.4
3,476,506	-		GFF3435	0.61	+0.6
3,476,506	-		GFF3435	0.61	+0.2
3,476,506	-		GFF3435	0.61	-0.4
3,476,522	-		GFF3435	0.64	+0.6
3,476,529	+		GFF3435	0.65	+0.6
3,476,534	+		GFF3435	0.65	-0.6
3,476,535	+		GFF3435	0.65	+0.2
3,476,538	-		GFF3435	0.66	+0.6
3,476,540	+		GFF3435	0.66	+0.5
3,476,548	-		GFF3435	0.67	+0.2
3,476,575	-		GFF3435	0.71	+0.5
3,476,579	+		GFF3435	0.71	-1.7
3,476,579	+		GFF3435	0.71	+0.3
3,476,579	+		GFF3435	0.71	-0.0
3,476,579	+		GFF3435	0.71	+1.1
3,476,587	-		GFF3435	0.72	-0.2
3,476,587	-		GFF3435	0.72	+0.8
3,476,588	+		GFF3435	0.72	+0.3
3,476,588	-		GFF3435	0.72	-1.2
3,476,596	-		GFF3435	0.73	+0.0
3,476,608	+		GFF3435	0.75	-1.6
3,476,617	-		GFF3435	0.76	-1.3
3,476,695	+		GFF3435	0.87	+1.5
3,476,708	+		GFF3435	0.88	-0.6
3,476,722	+				-0.1
3,476,722	+				-0.9
3,476,741	-				-0.3
3,476,759	+				+0.5
3,476,773	+				-0.8
3,476,775	+				+0.3
3,476,783	+				-1.5
3,476,791	-				+0.6
3,476,802	+				+0.5
3,476,804	+				+0.0
3,476,834	-				-0.5
3,476,836	-				-0.6
3,476,842	+				-1.9
3,476,846	+				-0.2
3,476,846	+				-0.2
3,476,849	-				-1.1
3,476,850	-				-0.3
3,476,854	-				+0.0
3,476,854	-				+0.1
3,476,863	+				-1.4
3,476,873	-				-1.5
3,476,891	+				-1.6
3,476,901	+				-1.6
3,476,901	+				-0.7
3,476,909	-				+0.2
3,476,914	-				+0.1
3,476,960	+				-0.5
3,476,968	+				-0.4
3,476,971	-				+0.2
3,476,973	+				-0.2
3,476,981	-				-1.9
3,476,988	+				+0.3
3,476,991	-		GFF3436	0.10	+0.6
3,476,991	-		GFF3436	0.10	+0.2
3,477,007	+		GFF3436	0.12	+0.3
3,477,015	-		GFF3436	0.12	-0.5
3,477,021	+		GFF3436	0.13	-0.6
3,477,026	+		GFF3436	0.13	+0.0
3,477,042	+		GFF3436	0.14	-0.8
3,477,042	+		GFF3436	0.14	+0.3
3,477,064	+		GFF3436	0.16	-0.2
3,477,077	+		GFF3436	0.17	-0.6
3,477,094	+		GFF3436	0.19	+0.4
3,477,109	-		GFF3436	0.20	-0.6
3,477,112	+		GFF3436	0.20	-0.2
3,477,138	+		GFF3436	0.22	-0.9
3,477,138	+		GFF3436	0.22	+0.3
3,477,138	+		GFF3436	0.22	-0.2
3,477,138	+		GFF3436	0.22	-1.6
3,477,138	+		GFF3436	0.22	-2.1
3,477,138	+		GFF3436	0.22	-0.6
3,477,138	+		GFF3436	0.22	-1.3
3,477,138	+		GFF3436	0.22	-0.1
3,477,138	+		GFF3436	0.22	-0.3
3,477,138	+		GFF3436	0.22	+0.3
3,477,138	+		GFF3436	0.22	-1.8
3,477,138	+		GFF3436	0.22	+0.4
3,477,138	+		GFF3436	0.22	+0.8
3,477,138	+		GFF3436	0.22	-1.1
3,477,138	+		GFF3436	0.22	-0.6
3,477,138	+		GFF3436	0.22	+0.3
3,477,138	+		GFF3436	0.22	-0.0
3,477,138	+		GFF3436	0.22	-1.1
3,477,138	+		GFF3436	0.22	-0.3
3,477,138	+		GFF3436	0.22	-1.5
3,477,138	+		GFF3436	0.22	-0.1
3,477,138	+		GFF3436	0.22	-1.7
3,477,138	+		GFF3436	0.22	-2.1
3,477,146	+		GFF3436	0.23	-0.0
3,477,146	-		GFF3436	0.23	-0.4
3,477,146	-		GFF3436	0.23	+1.2
3,477,146	-		GFF3436	0.23	-2.2
3,477,146	-		GFF3436	0.23	-1.7
3,477,146	-		GFF3436	0.23	+0.4
3,477,146	-		GFF3436	0.23	-2.1
3,477,146	-		GFF3436	0.23	-0.2
3,477,146	-		GFF3436	0.23	+1.1
3,477,146	-		GFF3436	0.23	-0.7
3,477,146	-		GFF3436	0.23	+0.5
3,477,146	-		GFF3436	0.23	+1.3
3,477,146	-		GFF3436	0.23	+0.5
3,477,146	-		GFF3436	0.23	+0.6
3,477,146	-		GFF3436	0.23	+0.1
3,477,146	-		GFF3436	0.23	+0.6
3,477,146	-		GFF3436	0.23	+0.2
3,477,146	-		GFF3436	0.23	+0.8
3,477,146	-		GFF3436	0.23	-0.2
3,477,146	-		GFF3436	0.23	-1.8
3,477,146	-		GFF3436	0.23	+0.1
3,477,146	-		GFF3436	0.23	+0.0
3,477,146	-		GFF3436	0.23	-0.9
3,477,146	-		GFF3436	0.23	+0.1
3,477,146	-		GFF3436	0.23	+0.3
3,477,146	-		GFF3436	0.23	-0.8
3,477,146	-		GFF3436	0.23	-0.2
3,477,148	+		GFF3436	0.23	-1.4
3,477,148	+		GFF3436	0.23	+1.1
3,477,148	+		GFF3436	0.23	+0.1
3,477,148	+		GFF3436	0.23	-0.5
3,477,153	+		GFF3436	0.24	-2.0
3,477,153	+		GFF3436	0.24	-0.3
3,477,153	+		GFF3436	0.24	-0.4
3,477,153	+		GFF3436	0.24	-0.9
3,477,153	+		GFF3436	0.24	-1.2
3,477,153	+		GFF3436	0.24	-1.0
3,477,153	+		GFF3436	0.24	-2.5
3,477,153	+		GFF3436	0.24	+1.1
3,477,153	+		GFF3436	0.24	-1.1
3,477,153	+		GFF3436	0.24	+1.8
3,477,153	+		GFF3436	0.24	-1.2
3,477,156	-		GFF3436	0.24	-0.4
3,477,156	-		GFF3436	0.24	-0.2
3,477,156	-		GFF3436	0.24	-0.4
3,477,156	-		GFF3436	0.24	-1.6
3,477,161	-		GFF3436	0.24	-1.2
3,477,161	-		GFF3436	0.24	+1.9
3,477,161	-		GFF3436	0.24	-0.7
3,477,161	-		GFF3436	0.24	-1.1
3,477,161	-		GFF3436	0.24	-0.8
3,477,161	-		GFF3436	0.24	+0.6
3,477,161	-		GFF3436	0.24	-0.0
3,477,161	-		GFF3436	0.24	-1.8
3,477,161	-		GFF3436	0.24	-0.6
3,477,161	-		GFF3436	0.24	+0.6
3,477,161	-		GFF3436	0.24	-1.7
3,477,161	-		GFF3436	0.24	+0.8
3,477,161	-		GFF3436	0.24	-2.0
3,477,161	-		GFF3436	0.24	+0.2
3,477,161	-		GFF3436	0.24	-1.4
3,477,161	-		GFF3436	0.24	-1.1
3,477,166	-		GFF3436	0.25	+0.0
3,477,171	+		GFF3436	0.25	-0.4
3,477,171	+		GFF3436	0.25	+0.6
3,477,171	+		GFF3436	0.25	-2.9
3,477,171	-		GFF3436	0.25	-0.4
3,477,176	+		GFF3436	0.25	+0.7
3,477,176	-		GFF3436	0.25	-2.6
3,477,179	-		GFF3436	0.26	-1.3
3,477,179	-		GFF3436	0.26	+0.3
3,477,242	+		GFF3436	0.31	-2.1
3,477,250	-		GFF3436	0.32	-0.9
3,477,250	-		GFF3436	0.32	-0.9
3,477,285	+		GFF3436	0.34	-0.8
3,477,286	-		GFF3436	0.34	+1.1
3,477,290	+		GFF3436	0.35	-0.4
3,477,293	-		GFF3436	0.35	-0.5
3,477,299	+		GFF3436	0.36	-0.4
3,477,331	+		GFF3436	0.38	-1.4
3,477,331	+		GFF3436	0.38	-2.5
3,477,331	+		GFF3436	0.38	-0.6
3,477,339	+		GFF3436	0.39	-2.7
3,477,339	+		GFF3436	0.39	+0.2
3,477,339	+		GFF3436	0.39	-0.5
3,477,339	-		GFF3436	0.39	-0.2
3,477,339	-		GFF3436	0.39	-1.2
3,477,341	+		GFF3436	0.39	-0.9
3,477,347	-		GFF3436	0.40	-0.3
3,477,358	-		GFF3436	0.40	+0.3
3,477,363	-		GFF3436	0.41	-0.3
3,477,371	-		GFF3436	0.41	+0.2
3,477,391	-		GFF3436	0.43	+1.0
3,477,391	-		GFF3436	0.43	-1.1
3,477,402	+		GFF3436	0.44	-0.3
3,477,410	-		GFF3436	0.45	+0.1
3,477,415	-		GFF3436	0.45	+0.8
3,477,423	-		GFF3436	0.46	-1.4
3,477,423	-		GFF3436	0.46	-0.8
3,477,433	+		GFF3436	0.47	-0.0
3,477,435	+		GFF3436	0.47	-0.9
3,477,441	-		GFF3436	0.47	+0.6
3,477,456	+		GFF3436	0.48	-0.7
3,477,473	+		GFF3436	0.50	+0.1
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3,477,541	-		GFF3436	0.55	-0.9
3,477,551	+		GFF3436	0.56	-2.5
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