Strain Fitness in Sphingobium sp. HT1-2 around GFF3432

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,472,574	+		GFF3431	0.35	-1.4
3,472,592	+		GFF3431	0.36	+0.4
3,472,594	+		GFF3431	0.36	-1.5
3,472,602	-		GFF3431	0.37	-0.5
3,472,604	+		GFF3431	0.37	+0.5
3,472,604	+		GFF3431	0.37	-1.2
3,472,604	+		GFF3431	0.37	+0.0
3,472,604	+		GFF3431	0.37	-0.5
3,472,604	+		GFF3431	0.37	-1.4
3,472,604	+		GFF3431	0.37	+0.8
3,472,604	+		GFF3431	0.37	+1.6
3,472,604	+		GFF3431	0.37	+1.0
3,472,604	+		GFF3431	0.37	+0.2
3,472,604	+		GFF3431	0.37	-1.9
3,472,604	+		GFF3431	0.37	-1.4
3,472,612	-		GFF3431	0.37	-1.2
3,472,612	-		GFF3431	0.37	+0.0
3,472,612	-		GFF3431	0.37	+1.1
3,472,612	-		GFF3431	0.37	-0.5
3,472,612	-		GFF3431	0.37	-1.2
3,472,613	-		GFF3431	0.37	-1.1
3,472,614	+		GFF3431	0.38	-1.5
3,472,614	+		GFF3431	0.38	-0.7
3,472,621	+		GFF3431	0.38	-2.5
3,472,622	-		GFF3431	0.38	+0.2
3,472,639	+		GFF3431	0.39	+0.6
3,472,670	+		GFF3431	0.42	-0.1
3,472,670	+		GFF3431	0.42	-1.3
3,472,672	+		GFF3431	0.42	-1.9
3,472,672	+		GFF3431	0.42	+0.0
3,472,672	+		GFF3431	0.42	-0.2
3,472,680	-		GFF3431	0.42	-1.3
3,472,696	+		GFF3431	0.43	-0.3
3,472,699	-		GFF3431	0.44	+0.2
3,472,736	+		GFF3431	0.46	+0.4
3,472,736	+		GFF3431	0.46	-1.2
3,472,744	-		GFF3431	0.47	+0.7
3,472,748	+		GFF3431	0.47	-1.0
3,472,768	+		GFF3431	0.48	+0.0
3,472,768	+		GFF3431	0.48	-1.5
3,472,776	+		GFF3431	0.49	-1.6
3,472,776	-		GFF3431	0.49	-2.2
3,472,778	+		GFF3431	0.49	-0.7
3,472,778	-		GFF3431	0.49	+0.6
3,472,785	-		GFF3431	0.50	-0.0
3,472,806	+		GFF3431	0.51	-0.1
3,472,826	+		GFF3431	0.53	+0.3
3,472,826	+		GFF3431	0.53	+0.6
3,472,847	-		GFF3431	0.54	-0.7
3,472,872	-		GFF3431	0.56	-0.5
3,472,872	-		GFF3431	0.56	-1.0
3,472,879	+		GFF3431	0.56	-1.3
3,472,885	-		GFF3431	0.57	-1.0
3,472,891	-		GFF3431	0.57	-0.2
3,472,904	+		GFF3431	0.58	-0.8
3,472,904	+		GFF3431	0.58	-1.4
3,472,912	-		GFF3431	0.59	-0.1
3,472,944	+		GFF3431	0.61	-0.5
3,472,995	+		GFF3431	0.65	-1.0
3,472,995	+		GFF3431	0.65	-1.1
3,473,002	+		GFF3431	0.65	-2.3
3,473,002	+		GFF3431	0.65	+0.8
3,473,002	+		GFF3431	0.65	+0.7
3,473,003	-		GFF3431	0.65	+0.3
3,473,003	-		GFF3431	0.65	+0.1
3,473,007	+		GFF3431	0.65	-0.2
3,473,010	-		GFF3431	0.66	-0.7
3,473,010	-		GFF3431	0.66	-0.8
3,473,012	+		GFF3431	0.66	+0.3
3,473,015	-		GFF3431	0.66	+0.6
3,473,022	+		GFF3431	0.67	+0.1
3,473,023	+		GFF3431	0.67	+1.2
3,473,030	-		GFF3431	0.67	+0.4
3,473,031	-		GFF3431	0.67	+0.5
3,473,094	+		GFF3431	0.72	-1.2
3,473,099	+		GFF3431	0.72	+0.0
3,473,102	-		GFF3431	0.72	-1.0
3,473,137	-		GFF3431	0.75	-0.2
3,473,147	-		GFF3431	0.75	+1.8
3,473,161	-		GFF3431	0.76	+0.6
3,473,172	+		GFF3431	0.77	+0.2
3,473,172	+		GFF3431	0.77	-2.5
3,473,173	+		GFF3431	0.77	-1.0
3,473,181	-		GFF3431	0.78	+0.2
3,473,181	-		GFF3431	0.78	+0.5
3,473,205	+		GFF3431	0.80	-0.7
3,473,205	+		GFF3431	0.80	-0.4
3,473,213	-		GFF3431	0.80	-0.7
3,473,213	-		GFF3431	0.80	-0.3
3,473,229	+		GFF3431	0.81	-2.0
3,473,229	+		GFF3431	0.81	-1.3
3,473,230	+		GFF3431	0.81	-0.7
3,473,230	+		GFF3431	0.81	+0.4
3,473,237	-		GFF3431	0.82	-1.4
3,473,238	-		GFF3431	0.82	-0.3
3,473,238	-		GFF3431	0.82	+0.1
3,473,257	+		GFF3431	0.83	+0.8
3,473,267	+		GFF3431	0.84	-0.2
3,473,267	+		GFF3431	0.84	+0.2
3,473,267	+		GFF3431	0.84	-0.2
3,473,267	+		GFF3431	0.84	-1.0
3,473,267	+		GFF3431	0.84	-1.0
3,473,267	+		GFF3431	0.84	+0.6
3,473,275	-		GFF3431	0.85	+0.4
3,473,275	-		GFF3431	0.85	+0.0
3,473,275	-		GFF3431	0.85	+0.2
3,473,275	-		GFF3431	0.85	-0.1
3,473,275	-		GFF3431	0.85	-0.4
3,473,275	-		GFF3431	0.85	-0.1
3,473,275	-		GFF3431	0.85	-0.2
3,473,275	-		GFF3431	0.85	-0.1
3,473,275	-		GFF3431	0.85	+1.3
3,473,275	-		GFF3431	0.85	-0.8
3,473,275	-		GFF3431	0.85	-1.4
3,473,275	-		GFF3431	0.85	+0.8
3,473,285	+		GFF3431	0.85	-0.4
3,473,293	-		GFF3431	0.86	-0.6
3,473,299	+		GFF3431	0.86	-2.0
3,473,299	+		GFF3431	0.86	-0.7
3,473,299	-		GFF3431	0.86	-0.8
3,473,304	+		GFF3431	0.87	+0.0
3,473,307	-		GFF3431	0.87	-1.4
3,473,307	-		GFF3431	0.87	+0.8
3,473,312	-		GFF3431	0.87	-2.2
3,473,315	-		GFF3431	0.87	-0.4
3,473,336	+		GFF3431	0.89	-0.4
3,473,339	-		GFF3431	0.89	-0.6
3,473,340	+		GFF3431	0.89	+1.2
3,473,344	-		GFF3431	0.89	+0.5
3,473,344	-		GFF3431	0.89	-0.6
3,473,376	+				+0.3
3,473,376	+				-0.0
3,473,381	+				-0.7
3,473,381	+				+0.3
3,473,384	-				-0.4
3,473,384	-				-1.1
3,473,386	+				-0.4
3,473,389	-				-0.2
3,473,400	+				-0.3
3,473,416	+				+0.2
3,473,436	-				-2.4
3,473,492	+				-1.8
3,473,516	-				+0.8
3,473,521	-				+1.4
3,473,523	+				-0.7
3,473,523	+				-1.6
3,473,525	+				-0.6
3,473,525	+				-0.1
3,473,525	+				-0.4
3,473,525	+				-0.7
3,473,528	-				-1.6
3,473,533	-				-1.9
3,473,552	-		GFF3432	0.18	-0.8
3,473,569	-		GFF3432	0.30	-2.3
3,473,604	+		GFF3432	0.56	-1.9
3,473,604	+		GFF3432	0.56	-1.9
3,473,627	+		GFF3432	0.73	-0.2
3,473,630	-		GFF3432	0.76	-0.0
3,473,632	+		GFF3432	0.77	-0.5
3,473,635	-		GFF3432	0.79	-0.6
3,473,652	-				-0.6
3,473,656	+				+0.4
3,473,664	-				+0.8
3,473,664	-				+0.2
3,473,664	-				+0.3
3,473,683	-				+0.2
3,473,684	-				-1.2
3,473,690	-				-0.9
3,473,690	-				+1.0
3,473,701	-				-2.5
3,473,711	+				-0.1
3,473,725	+				-1.0
3,473,733	-				+0.5
3,473,733	-				+0.9
3,473,740	+				+0.2
3,473,751	+				-1.0
3,473,751	+				-0.4
3,473,773	+				-0.1
3,473,781	-				+0.4
3,473,786	-				+1.6
3,473,814	-				-0.2
3,473,819	+				-2.0
3,473,824	+				-0.7
3,473,824	+				-1.2
3,473,824	+				+0.3
3,473,824	+				-2.0
3,473,824	+				-0.5
3,473,829	+				+0.3
3,473,832	-				-1.7
3,473,832	-				+0.2
3,473,832	-				+0.8
3,473,837	-				+1.2
3,473,888	-		GFF3433	0.10	+0.0
3,473,888	-		GFF3433	0.10	-0.2
3,473,893	-		GFF3433	0.11	+0.0
3,473,895	+		GFF3433	0.11	-1.2
3,473,895	+		GFF3433	0.11	-0.4
3,473,904	+		GFF3433	0.12	-0.8
3,473,931	+		GFF3433	0.14	+0.3
3,473,990	+		GFF3433	0.18	+0.3
3,473,990	+		GFF3433	0.18	-1.5
3,473,990	+		GFF3433	0.18	+0.6
3,473,990	+		GFF3433	0.18	+0.6
3,473,990	+		GFF3433	0.18	-2.0
3,473,990	+		GFF3433	0.18	+0.0
3,473,998	-		GFF3433	0.19	-0.5
3,473,998	-		GFF3433	0.19	+0.1
3,474,004	+		GFF3433	0.20	-1.6
3,474,007	-		GFF3433	0.20	-1.2
3,474,023	+		GFF3433	0.21	-0.8
3,474,030	+		GFF3433	0.22	-0.3
3,474,030	+		GFF3433	0.22	-0.5
3,474,030	+		GFF3433	0.22	+0.2
3,474,038	-		GFF3433	0.22	-1.6
3,474,047	-		GFF3433	0.23	-0.1
3,474,064	-		GFF3433	0.24	-0.2
3,474,069	+		GFF3433	0.25	-0.5
3,474,070	+		GFF3433	0.25	-1.1
3,474,070	+		GFF3433	0.25	-0.0
3,474,070	+		GFF3433	0.25	+1.1
3,474,103	+		GFF3433	0.27	-0.1
3,474,103	+		GFF3433	0.27	-0.2
3,474,109	-		GFF3433	0.28	-0.4
3,474,111	-		GFF3433	0.28	+0.5
3,474,111	-		GFF3433	0.28	+0.8
3,474,119	-		GFF3433	0.29	+0.1
3,474,128	+		GFF3433	0.29	-0.2
3,474,128	+		GFF3433	0.29	+1.4
3,474,128	+		GFF3433	0.29	-1.7
3,474,128	+		GFF3433	0.29	-0.6
3,474,131	+		GFF3433	0.29	-0.6
3,474,134	-		GFF3433	0.30	-0.2
3,474,134	-		GFF3433	0.30	-0.9
3,474,136	-		GFF3433	0.30	+1.0
3,474,136	-		GFF3433	0.30	-0.5
3,474,136	-		GFF3433	0.30	-0.6
3,474,136	-		GFF3433	0.30	-0.3
3,474,139	-		GFF3433	0.30	+0.4
3,474,154	-		GFF3433	0.31	-0.9
3,474,175	-		GFF3433	0.33	-0.3
3,474,175	-		GFF3433	0.33	+0.9
3,474,187	+		GFF3433	0.34	-1.2
3,474,187	+		GFF3433	0.34	-0.1
3,474,190	-		GFF3433	0.34	-1.4
3,474,195	-		GFF3433	0.35	-1.7
3,474,197	+		GFF3433	0.35	+1.1
3,474,207	+		GFF3433	0.35	-1.2
3,474,225	+		GFF3433	0.37	+0.2
3,474,233	-		GFF3433	0.37	-0.6
3,474,233	-		GFF3433	0.37	+1.1
3,474,254	+		GFF3433	0.39	-1.6
3,474,262	-		GFF3433	0.40	-0.0
3,474,279	+		GFF3433	0.41	-2.4
3,474,279	+		GFF3433	0.41	-0.1
3,474,335	+		GFF3433	0.45	+0.5
3,474,343	-		GFF3433	0.46	-0.9
3,474,362	+		GFF3433	0.48	-0.1
3,474,364	-		GFF3433	0.48	-0.9
3,474,374	-		GFF3433	0.49	+0.7
3,474,383	+		GFF3433	0.49	-0.4
3,474,383	+		GFF3433	0.49	-0.1
3,474,390	-		GFF3433	0.50	-1.6
3,474,391	-		GFF3433	0.50	-1.7
3,474,417	+		GFF3433	0.52	+0.1
3,474,422	+		GFF3433	0.52	-0.8
3,474,423	+		GFF3433	0.52	+0.2
3,474,423	+		GFF3433	0.52	-0.6
3,474,431	-		GFF3433	0.53	-0.5
3,474,436	+		GFF3433	0.53	-2.7
3,474,444	-		GFF3433	0.54	-0.2
3,474,452	+		GFF3433	0.55	-0.0
3,474,471	+		GFF3433	0.56	-1.0
3,474,484	-		GFF3433	0.57	-1.2
3,474,490	-		GFF3433	0.58	+1.3
3,474,504	+		GFF3433	0.59	+0.8
3,474,504	+		GFF3433	0.59	-1.6
3,474,505	+		GFF3433	0.59	-0.7
3,474,505	+		GFF3433	0.59	-0.7
3,474,512	-		GFF3433	0.59	-1.0
3,474,513	-		GFF3433	0.59	-0.3
3,474,513	-		GFF3433	0.59	+1.6
3,474,517	-		GFF3433	0.60	-2.1
3,474,557	+		GFF3433	0.63	+0.3
3,474,565	-		GFF3433	0.64	-0.0
3,474,565	-		GFF3433	0.64	+0.3
3,474,565	-		GFF3433	0.64	-0.7
3,474,573	-		GFF3433	0.64	+1.3
3,474,594	+		GFF3433	0.66	+0.5
3,474,603	-		GFF3433	0.67	-0.9
3,474,625	+		GFF3433	0.68	+1.1
3,474,628	-		GFF3433	0.68	+0.5
3,474,628	-		GFF3433	0.68	-0.1
3,474,629	-		GFF3433	0.69	+0.3
3,474,638	-		GFF3433	0.69	-1.9
3,474,645	+		GFF3433	0.70	-0.2
3,474,660	-		GFF3433	0.71	-0.0