Strain Fitness in Sphingobium sp. HT1-2 around GFF3417

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,457,623	-		GFF3414	0.89	+0.0
3,457,623	-		GFF3414	0.89	+0.9
3,457,629	+				-0.4
3,457,629	+				+0.0
3,457,634	+				-0.6
3,457,634	+				+0.8
3,457,637	-				-0.5
3,457,642	-				+0.1
3,457,642	-				+0.6
3,457,647	-				-0.0
3,457,648	+				-0.2
3,457,656	-				-0.3
3,457,673	-				-1.5
3,457,728	-				-0.4
3,457,728	-				+1.2
3,457,728	-				-1.4
3,457,732	+				-0.5
3,457,732	+				-1.2
3,457,737	+				-0.6
3,457,737	+				-0.1
3,457,737	+				-0.6
3,457,737	+				+1.6
3,457,742	+				+1.4
3,457,750	-				-0.0
3,457,750	-				-0.8
3,457,755	+				-1.1
3,457,786	-				-0.1
3,457,797	-				-0.9
3,457,799	-				+0.3
3,457,819	-				+0.5
3,457,819	-				-2.0
3,457,819	-				+0.4
3,457,840	-		GFF3415	0.15	-0.4
3,457,845	-		GFF3415	0.17	+0.5
3,457,852	-		GFF3415	0.19	+0.4
3,457,867	+		GFF3415	0.24	-1.2
3,457,867	+		GFF3415	0.24	+0.2
3,457,867	+		GFF3415	0.24	-1.0
3,457,867	+		GFF3415	0.24	-1.5
3,457,867	+		GFF3415	0.24	-1.8
3,457,875	-		GFF3415	0.27	+0.2
3,457,875	-		GFF3415	0.27	-0.6
3,457,875	-		GFF3415	0.27	-0.1
3,457,875	-		GFF3415	0.27	-0.3
3,457,875	-		GFF3415	0.27	+0.7
3,457,875	-		GFF3415	0.27	-0.5
3,457,909	+		GFF3415	0.38	-0.0
3,457,917	-		GFF3415	0.41	-2.2
3,457,952	-		GFF3415	0.52	+0.8
3,457,956	-		GFF3415	0.53	-0.6
3,458,006	-		GFF3415	0.70	-0.2
3,458,006	-		GFF3415	0.70	-1.3
3,458,033	+		GFF3415	0.79	-0.4
3,458,039	-		GFF3415	0.81	+1.0
3,458,039	-		GFF3415	0.81	-0.9
3,458,090	+				-1.7
3,458,095	+				-0.2
3,458,104	+				-0.4
3,458,179	-				-2.2
3,458,193	-				-0.4
3,458,214	+		GFF3416	0.13	-0.3
3,458,214	+		GFF3416	0.13	+1.0
3,458,222	-		GFF3416	0.16	-0.5
3,458,227	-		GFF3416	0.18	+0.9
3,458,235	-		GFF3416	0.21	-1.8
3,458,246	+		GFF3416	0.24	+0.6
3,458,247	+		GFF3416	0.25	-1.6
3,458,254	+		GFF3416	0.27	+0.6
3,458,255	-		GFF3416	0.27	+0.7
3,458,262	+		GFF3416	0.30	-0.3
3,458,262	+		GFF3416	0.30	-0.5
3,458,262	+		GFF3416	0.30	+0.0
3,458,262	+		GFF3416	0.30	+1.4
3,458,262	+		GFF3416	0.30	-1.2
3,458,262	+		GFF3416	0.30	-1.1
3,458,262	+		GFF3416	0.30	+0.8
3,458,269	+		GFF3416	0.32	-0.7
3,458,270	-		GFF3416	0.32	-0.4
3,458,270	-		GFF3416	0.32	+0.0
3,458,270	-		GFF3416	0.32	+0.3
3,458,270	-		GFF3416	0.32	-0.4
3,458,270	-		GFF3416	0.32	+0.1
3,458,270	-		GFF3416	0.32	+0.0
3,458,270	-		GFF3416	0.32	-2.4
3,458,277	-		GFF3416	0.35	-0.0
3,458,283	-		GFF3416	0.37	-0.2
3,458,289	+		GFF3416	0.39	+0.1
3,458,303	-		GFF3416	0.43	-2.8
3,458,307	+		GFF3416	0.45	-0.7
3,458,318	-		GFF3416	0.48	+1.4
3,458,333	+		GFF3416	0.54	-0.3
3,458,349	-		GFF3416	0.59	+0.3
3,458,354	+		GFF3416	0.61	+0.6
3,458,354	+		GFF3416	0.61	-0.6
3,458,354	+		GFF3416	0.61	-1.7
3,458,357	-		GFF3416	0.62	+0.7
3,458,358	-		GFF3416	0.62	-0.3
3,458,362	+		GFF3416	0.63	-1.8
3,458,362	-		GFF3416	0.63	-0.1
3,458,362	-		GFF3416	0.63	-1.4
3,458,362	-		GFF3416	0.63	-2.2
3,458,362	-		GFF3416	0.63	+0.3
3,458,362	-		GFF3416	0.63	+0.7
3,458,362	-		GFF3416	0.63	+0.7
3,458,362	-		GFF3416	0.63	+1.4
3,458,362	-		GFF3416	0.63	+0.7
3,458,362	-		GFF3416	0.63	-0.7
3,458,362	-		GFF3416	0.63	-1.3
3,458,362	-		GFF3416	0.63	-3.1
3,458,362	-		GFF3416	0.63	+0.2
3,458,362	-		GFF3416	0.63	+0.1
3,458,376	-		GFF3416	0.68	-0.1
3,458,380	+		GFF3416	0.69	-1.0
3,458,380	+		GFF3416	0.69	+1.5
3,458,380	+		GFF3416	0.69	+0.6
3,458,380	+		GFF3416	0.69	-0.1
3,458,385	+		GFF3416	0.71	+0.0
3,458,398	-		GFF3416	0.75	-1.2
3,458,402	+		GFF3416	0.77	+1.0
3,458,402	+		GFF3416	0.77	+0.0
3,458,461	+				-1.2
3,458,461	+				+1.5
3,458,469	-				-0.3
3,458,469	-				-2.0
3,458,472	+				+0.8
3,458,472	+				-0.2
3,458,472	+				-0.1
3,458,472	+				+0.2
3,458,472	+				-0.4
3,458,472	+				+0.6
3,458,472	+				-0.7
3,458,472	+				+1.0
3,458,472	+				-0.0
3,458,472	+				-2.2
3,458,472	+				+0.7
3,458,480	-				-0.6
3,458,480	-				-0.0
3,458,480	-				-0.7
3,458,480	-				-0.7
3,458,480	-				+0.6
3,458,480	-				-1.2
3,458,480	-				-1.0
3,458,480	-				-0.2
3,458,480	-				+0.1
3,458,480	-				+0.3
3,458,480	-				+1.2
3,458,480	-				-2.3
3,458,480	-				+0.3
3,458,481	-				-2.6
3,458,491	+				-1.9
3,458,493	+				+0.6
3,458,499	-				+1.6
3,458,502	+				+0.4
3,458,510	-				-0.9
3,458,511	+				-0.9
3,458,516	+				+1.5
3,458,516	+				-1.1
3,458,516	+				-0.4
3,458,519	-				+0.3
3,458,524	-				-0.3
3,458,529	-				+0.8
3,458,530	+				-1.4
3,458,535	-				-0.0
3,458,619	+				+0.6
3,458,626	-				-2.3
3,458,626	-				-0.0
3,458,626	-				+0.8
3,458,649	+				+0.6
3,458,655	-		GFF3417	0.10	+0.0
3,458,655	-		GFF3417	0.10	+0.8
3,458,712	-		GFF3417	0.24	+1.1
3,458,799	+		GFF3417	0.45	-0.1
3,458,804	+		GFF3417	0.47	+1.1
3,458,804	+		GFF3417	0.47	-0.4
3,458,807	-		GFF3417	0.47	-0.8
3,458,807	-		GFF3417	0.47	-0.6
3,458,807	-		GFF3417	0.47	-0.4
3,458,807	-		GFF3417	0.47	+0.3
3,458,807	-		GFF3417	0.47	+1.3
3,458,807	-		GFF3417	0.47	-0.9
3,458,809	+		GFF3417	0.48	+1.9
3,458,809	+		GFF3417	0.48	+0.1
3,458,809	+		GFF3417	0.48	+0.4
3,458,812	-		GFF3417	0.49	-2.6
3,458,812	-		GFF3417	0.49	-1.6
3,458,817	-		GFF3417	0.50	-0.1
3,458,817	-		GFF3417	0.50	+0.8
3,458,817	-		GFF3417	0.50	-0.6
3,458,843	-		GFF3417	0.56	+0.2
3,458,843	-		GFF3417	0.56	-1.1
3,458,850	+		GFF3417	0.58	-0.2
3,458,858	-		GFF3417	0.60	-1.2
3,458,869	-		GFF3417	0.62	-0.7
3,458,871	+		GFF3417	0.63	-2.0
3,458,891	+		GFF3417	0.68	-0.0
3,458,903	+		GFF3417	0.71	+0.5
3,458,903	+		GFF3417	0.71	-2.0
3,458,927	+		GFF3417	0.77	+1.3
3,458,927	-		GFF3417	0.77	-2.5
3,458,935	-		GFF3417	0.79	+0.6
3,458,935	-		GFF3417	0.79	-1.5
3,458,937	+		GFF3417	0.79	+0.3
3,458,945	-		GFF3417	0.81	+1.1
3,458,945	-		GFF3417	0.81	+1.0
3,458,945	-		GFF3417	0.81	-1.0
3,458,959	-		GFF3417	0.85	+0.2
3,458,959	-		GFF3417	0.85	-1.3
3,458,960	+		GFF3417	0.85	-0.9
3,458,960	+		GFF3417	0.85	-0.8
3,458,960	+		GFF3417	0.85	-0.3
3,458,968	-		GFF3417	0.87	-0.6
3,458,968	-		GFF3417	0.87	+0.6
3,458,968	-		GFF3417	0.87	-0.1
3,458,970	+		GFF3417	0.87	+1.0
3,458,970	+		GFF3417	0.87	+0.3
3,458,970	+		GFF3417	0.87	-0.4
3,458,978	-		GFF3417	0.89	+0.6
3,458,978	-		GFF3417	0.89	-2.2
3,458,978	-		GFF3417	0.89	-1.1
3,459,052	+				+0.7
3,459,063	+				-0.4
3,459,066	-				+0.8
3,459,082	-				+0.0
3,459,109	+				+0.3
3,459,132	+				-0.0
3,459,140	-				+0.1
3,459,144	+				-0.8
3,459,148	-				-0.3
3,459,150	+				+0.5
3,459,155	+				-1.0
3,459,160	+				+1.9
3,459,160	-				+0.4
3,459,162	+				+0.4
3,459,163	-				-0.0
3,459,163	-				+1.0
3,459,170	-				-1.2
3,459,170	-				-0.7
3,459,170	-				-0.4
3,459,230	+		GFF3418	0.12	+0.3
3,459,231	+		GFF3418	0.12	-0.0
3,459,243	+		GFF3418	0.13	-1.8
3,459,252	-		GFF3418	0.14	+1.2
3,459,254	+		GFF3418	0.14	+1.0
3,459,271	+		GFF3418	0.16	-0.9
3,459,277	-		GFF3418	0.17	-1.6
3,459,330	-		GFF3418	0.22	-1.4
3,459,335	+		GFF3418	0.23	-1.6
3,459,335	+		GFF3418	0.23	+0.5
3,459,343	-		GFF3418	0.24	-0.1
3,459,343	-		GFF3418	0.24	+0.6
3,459,370	+		GFF3418	0.26	-0.2
3,459,397	+		GFF3418	0.29	-0.6
3,459,434	-		GFF3418	0.33	-0.8
3,459,465	+		GFF3418	0.36	-2.0
3,459,470	+		GFF3418	0.37	-0.2
3,459,483	-		GFF3418	0.38	+0.0
3,459,521	+		GFF3418	0.42	-0.7
3,459,521	+		GFF3418	0.42	-0.0
3,459,521	+		GFF3418	0.42	-1.6
3,459,521	+		GFF3418	0.42	-0.2
3,459,521	+		GFF3418	0.42	-2.4
3,459,521	+		GFF3418	0.42	-0.3
3,459,529	-		GFF3418	0.43	-1.4
3,459,529	-		GFF3418	0.43	-0.6
3,459,529	-		GFF3418	0.43	+0.4
3,459,529	-		GFF3418	0.43	-1.4
3,459,529	-		GFF3418	0.43	-3.0
3,459,529	-		GFF3418	0.43	-0.7
3,459,529	-		GFF3418	0.43	+0.9
3,459,529	-		GFF3418	0.43	+1.4
3,459,542	+		GFF3418	0.45	-0.8
3,459,549	+		GFF3418	0.45	-0.1
3,459,577	+		GFF3418	0.48	-0.6
3,459,577	+		GFF3418	0.48	-1.2
3,459,577	+		GFF3418	0.48	-0.6
3,459,577	+		GFF3418	0.48	+0.5
3,459,577	+		GFF3418	0.48	-0.2
3,459,577	+		GFF3418	0.48	+0.6
3,459,577	+		GFF3418	0.48	-1.1
3,459,577	+		GFF3418	0.48	-0.7
3,459,577	+		GFF3418	0.48	+0.4
3,459,579	-		GFF3418	0.48	-0.5
3,459,579	-		GFF3418	0.48	+0.6
3,459,581	+		GFF3418	0.49	-2.2
3,459,583	-		GFF3418	0.49	+0.0
3,459,585	-		GFF3418	0.49	+0.3
3,459,585	-		GFF3418	0.49	+0.2
3,459,585	-		GFF3418	0.49	-0.7
3,459,585	-		GFF3418	0.49	-0.1
3,459,585	-		GFF3418	0.49	-1.5
3,459,585	-		GFF3418	0.49	-0.7
3,459,585	-		GFF3418	0.49	-1.3
3,459,596	-		GFF3418	0.50	-1.2
3,459,606	-		GFF3418	0.51	+0.0
3,459,620	-		GFF3418	0.53	-0.5
3,459,641	+		GFF3418	0.55	-1.1
3,459,652	-		GFF3418	0.56	-1.1
3,459,661	+		GFF3418	0.57	-0.8
3,459,693	+		GFF3418	0.60	+1.0
3,459,707	-		GFF3418	0.62	+0.3
3,459,709	+		GFF3418	0.62	-1.5
3,459,715	-		GFF3418	0.63	+0.7
3,459,727	+		GFF3418	0.64	-2.0
3,459,735	-		GFF3418	0.65	+0.7
3,459,735	-		GFF3418	0.65	-1.7
3,459,748	+		GFF3418	0.66	-0.4
3,459,750	-		GFF3418	0.66	-0.2
3,459,764	-		GFF3418	0.68	-1.0
3,459,813	+		GFF3418	0.73	+0.6
3,459,841	+		GFF3418	0.76	+1.6
3,459,841	+		GFF3418	0.76	-0.6
3,459,841	+		GFF3418	0.76	-0.0
3,459,841	+		GFF3418	0.76	+0.1
3,459,841	+		GFF3418	0.76	-0.6
3,459,841	+		GFF3418	0.76	+0.5
3,459,841	+		GFF3418	0.76	-2.0
3,459,841	+		GFF3418	0.76	+1.0
3,459,844	-		GFF3418	0.76	+1.3
3,459,846	+		GFF3418	0.77	-1.2
3,459,846	+		GFF3418	0.77	-0.4
3,459,849	-		GFF3418	0.77	-1.5
3,459,849	-		GFF3418	0.77	-1.0
3,459,849	-		GFF3418	0.77	-0.1
3,459,849	-		GFF3418	0.77	+1.1
3,459,849	-		GFF3418	0.77	+0.1
3,459,851	+		GFF3418	0.77	-0.9
3,459,856	+		GFF3418	0.78	+0.7
3,459,859	-		GFF3418	0.78	-1.4
3,459,864	-		GFF3418	0.78	-2.0
3,459,910	+		GFF3418	0.83	+0.1
3,459,918	-		GFF3418	0.84	-2.0
3,459,918	-		GFF3418	0.84	-0.4
3,459,918	-		GFF3418	0.84	+1.1
3,459,944	-		GFF3418	0.87	-1.2
3,459,960	+		GFF3418	0.89	-0.2
3,459,970	-		GFF3418	0.90	-1.9
3,459,975	+				-0.5
3,459,980	+				-0.1
3,459,994	+				+0.2
3,459,994	+				+0.3
3,459,999	+				+0.0
3,459,999	+				-1.3
3,459,999	+				+0.7
3,460,001	+				-1.1
3,460,002	-				+0.2
3,460,019	+				+0.1
3,460,019	+				-2.1