Strain Fitness in Sphingobium sp. HT1-2 around GFF3357

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,405,507	+				+0.4
3,405,507	-				-1.3
3,405,507	-				-0.7
3,405,515	-				+0.6
3,405,534	+				-0.8
3,405,534	+				-0.5
3,405,534	+				+0.2
3,405,537	-				+0.8
3,405,537	-				-0.5
3,405,539	+				+0.3
3,405,539	+				-0.5
3,405,539	+				-1.4
3,405,542	-				+0.3
3,405,547	-				-0.4
3,405,555	+				-0.9
3,405,555	+				-0.0
3,405,558	-				-0.3
3,405,558	-				-2.1
3,405,558	-				-0.8
3,405,563	-				+0.2
3,405,563	-				+0.6
3,405,563	-				-0.9
3,405,565	+				-0.4
3,405,578	-				-0.2
3,405,578	-				-0.1
3,405,629	-				-1.0
3,405,649	-		GFF3356	0.12	-0.2
3,405,649	-		GFF3356	0.12	-0.5
3,405,670	+		GFF3356	0.14	-0.9
3,405,708	+		GFF3356	0.19	-0.4
3,405,711	-		GFF3356	0.19	+0.1
3,405,716	-		GFF3356	0.20	-0.5
3,405,760	-		GFF3356	0.26	-1.0
3,405,762	-		GFF3356	0.26	-0.2
3,405,762	-		GFF3356	0.26	-1.4
3,405,771	-		GFF3356	0.27	+1.3
3,405,790	+		GFF3356	0.30	-0.5
3,405,790	+		GFF3356	0.30	+0.2
3,405,798	-		GFF3356	0.31	-1.4
3,405,798	-		GFF3356	0.31	-0.3
3,405,798	-		GFF3356	0.31	-0.8
3,405,837	+		GFF3356	0.35	-0.9
3,405,837	+		GFF3356	0.35	-0.7
3,405,850	-		GFF3356	0.37	+0.3
3,405,856	+		GFF3356	0.38	+0.4
3,405,864	-		GFF3356	0.39	-0.1
3,405,864	-		GFF3356	0.39	-1.1
3,405,881	+		GFF3356	0.41	+0.6
3,405,938	+		GFF3356	0.48	-1.7
3,405,942	-		GFF3356	0.49	-0.9
3,405,978	+		GFF3356	0.53	-0.7
3,405,988	+		GFF3356	0.55	-0.7
3,405,995	+		GFF3356	0.56	+1.1
3,405,995	+		GFF3356	0.56	-1.8
3,406,008	-		GFF3356	0.57	-0.3
3,406,014	+		GFF3356	0.58	+1.3
3,406,048	+		GFF3356	0.62	+0.8
3,406,058	+		GFF3356	0.64	+0.3
3,406,058	+		GFF3356	0.64	+0.1
3,406,066	+		GFF3356	0.65	-0.4
3,406,066	-		GFF3356	0.65	-0.0
3,406,066	-		GFF3356	0.65	-0.0
3,406,066	-		GFF3356	0.65	-0.5
3,406,066	-		GFF3356	0.65	-0.2
3,406,084	-		GFF3356	0.67	+0.1
3,406,084	-		GFF3356	0.67	+1.6
3,406,084	-		GFF3356	0.67	+0.3
3,406,084	-		GFF3356	0.67	-0.4
3,406,084	-		GFF3356	0.67	-0.3
3,406,113	-		GFF3356	0.71	-1.2
3,406,135	+		GFF3356	0.73	-0.4
3,406,135	-		GFF3356	0.73	-0.4
3,406,142	+		GFF3356	0.74	+1.7
3,406,162	-		GFF3356	0.77	-0.6
3,406,174	+		GFF3356	0.78	-1.5
3,406,175	+		GFF3356	0.78	-0.1
3,406,183	-		GFF3356	0.80	+0.6
3,406,238	-		GFF3356	0.87	-0.1
3,406,252	-		GFF3356	0.88	+0.2
3,406,259	+		GFF3356	0.89	+1.0
3,406,259	+		GFF3356	0.89	-0.1
3,406,268	+				-0.3
3,406,276	-				+0.2
3,406,277	-				+0.4
3,406,292	+				-1.5
3,406,292	+				-1.4
3,406,297	+				-0.1
3,406,300	-				-1.2
3,406,300	-				+0.1
3,406,302	+				+1.0
3,406,321	+				-0.8
3,406,332	+				+0.9
3,406,342	+				-0.0
3,406,342	+				+1.0
3,406,342	+				+0.1
3,406,350	-				+1.3
3,406,350	-				+1.4
3,406,350	-				+1.5
3,406,350	-				+0.2
3,406,352	+				-1.3
3,406,376	-				+0.2
3,406,376	-				+0.3
3,406,376	-				-1.3
3,406,378	+				+0.1
3,406,398	+				-1.1
3,406,399	+				-1.3
3,406,399	-				+0.3
3,406,404	+				+0.9
3,406,405	+				-1.7
3,406,412	-				+0.5
3,406,413	-				+0.8
3,406,477	+				-0.4
3,406,482	+				-0.5
3,406,482	+				-0.7
3,406,482	+				+0.7
3,406,482	+				+0.7
3,406,482	+				+1.5
3,406,482	+				+0.8
3,406,490	-				+0.4
3,406,490	-				+0.3
3,406,490	-				-1.4
3,406,490	-				+0.1
3,406,490	-				-2.3
3,406,490	-				-1.0
3,406,490	-				-1.7
3,406,497	+				+1.3
3,406,540	+				-0.9
3,406,541	+				+0.9
3,406,575	-				-1.3
3,406,585	+				-0.5
3,406,585	+				+0.1
3,406,601	-				-0.2
3,406,631	+				-0.8
3,406,631	+				-0.0
3,406,646	+				-0.4
3,406,646	+				-0.1
3,406,646	+				+0.5
3,406,654	-				-1.2
3,406,654	-				+0.2
3,406,654	-				-1.4
3,406,659	-				+0.5
3,406,688	+				+0.4
3,406,701	-				-0.7
3,406,701	-				-1.8
3,406,706	-				+0.6
3,406,753	-		GFF3357	0.12	-1.0
3,406,755	+		GFF3357	0.12	-0.8
3,406,765	+		GFF3357	0.13	+0.2
3,406,768	-		GFF3357	0.13	+0.5
3,406,787	-		GFF3357	0.14	+0.3
3,406,800	-		GFF3357	0.14	+0.1
3,406,800	-		GFF3357	0.14	+1.2
3,406,824	+		GFF3357	0.16	+1.4
3,406,824	+		GFF3357	0.16	+0.6
3,406,862	-		GFF3357	0.17	+0.6
3,406,878	+		GFF3357	0.18	-1.8
3,406,885	+		GFF3357	0.19	+0.7
3,406,888	-		GFF3357	0.19	-0.2
3,406,923	+		GFF3357	0.20	-1.3
3,406,980	+		GFF3357	0.23	-1.1
3,406,980	+		GFF3357	0.23	+0.5
3,406,989	+		GFF3357	0.24	-1.1
3,407,011	+		GFF3357	0.25	-1.5
3,407,023	-		GFF3357	0.25	-0.6
3,407,028	-		GFF3357	0.25	+0.6
3,407,028	-		GFF3357	0.25	-1.8
3,407,042	+		GFF3357	0.26	+0.1
3,407,042	+		GFF3357	0.26	-0.3
3,407,042	+		GFF3357	0.26	+0.1
3,407,042	+		GFF3357	0.26	+0.1
3,407,050	-		GFF3357	0.26	-0.2
3,407,118	+		GFF3357	0.30	-0.7
3,407,118	+		GFF3357	0.30	-0.3
3,407,118	+		GFF3357	0.30	+0.7
3,407,121	-		GFF3357	0.30	+0.7
3,407,123	-		GFF3357	0.30	-0.3
3,407,126	-		GFF3357	0.30	-0.4
3,407,133	+		GFF3357	0.30	+0.3
3,407,141	-		GFF3357	0.31	-1.3
3,407,141	-		GFF3357	0.31	+1.5
3,407,142	+		GFF3357	0.31	+0.3
3,407,142	+		GFF3357	0.31	+0.9
3,407,152	+		GFF3357	0.31	-0.9
3,407,152	+		GFF3357	0.31	+0.7
3,407,152	+		GFF3357	0.31	-1.2
3,407,152	+		GFF3357	0.31	+0.7
3,407,152	+		GFF3357	0.31	+1.3
3,407,152	+		GFF3357	0.31	+0.5
3,407,152	+		GFF3357	0.31	-0.8
3,407,152	+		GFF3357	0.31	+0.6
3,407,152	+		GFF3357	0.31	-0.9
3,407,160	-		GFF3357	0.32	+0.8
3,407,160	-		GFF3357	0.32	-1.0
3,407,160	-		GFF3357	0.32	-1.2
3,407,160	-		GFF3357	0.32	-0.7
3,407,160	-		GFF3357	0.32	-1.4
3,407,160	-		GFF3357	0.32	+0.8
3,407,160	-		GFF3357	0.32	-2.4
3,407,160	-		GFF3357	0.32	+0.3
3,407,160	-		GFF3357	0.32	-2.6
3,407,160	-		GFF3357	0.32	-1.3
3,407,160	-		GFF3357	0.32	-0.1
3,407,160	-		GFF3357	0.32	-0.2
3,407,160	-		GFF3357	0.32	-1.2
3,407,160	-		GFF3357	0.32	+0.9
3,407,160	-		GFF3357	0.32	-1.7
3,407,160	-		GFF3357	0.32	-0.3
3,407,165	-		GFF3357	0.32	-0.3
3,407,170	-		GFF3357	0.32	+0.0
3,407,218	-		GFF3357	0.34	+0.2
3,407,227	-		GFF3357	0.35	+0.2
3,407,251	+		GFF3357	0.36	+0.0
3,407,253	+		GFF3357	0.36	+0.0
3,407,259	-		GFF3357	0.36	-0.9
3,407,259	-		GFF3357	0.36	-0.4
3,407,259	-		GFF3357	0.36	-0.1
3,407,259	-		GFF3357	0.36	-0.7
3,407,260	+		GFF3357	0.36	-1.0
3,407,260	+		GFF3357	0.36	-0.6
3,407,267	-		GFF3357	0.37	+0.6
3,407,267	-		GFF3357	0.37	-0.1
3,407,273	+		GFF3357	0.37	-1.3
3,407,273	+		GFF3357	0.37	-0.8
3,407,275	-		GFF3357	0.37	-0.4
3,407,294	+		GFF3357	0.38	+0.1
3,407,332	-		GFF3357	0.40	+1.6
3,407,458	+		GFF3357	0.46	-2.2
3,407,484	-		GFF3357	0.47	-2.4
3,407,492	-		GFF3357	0.48	+1.3
3,407,504	-		GFF3357	0.48	-1.8
3,407,542	+		GFF3357	0.50	+0.3
3,407,542	+		GFF3357	0.50	+0.2
3,407,542	+		GFF3357	0.50	-0.3
3,407,542	+		GFF3357	0.50	-0.4
3,407,542	-		GFF3357	0.50	+1.2
3,407,550	-		GFF3357	0.50	-1.8
3,407,550	-		GFF3357	0.50	-2.4
3,407,550	-		GFF3357	0.50	-0.5
3,407,550	-		GFF3357	0.50	-0.9
3,407,550	-		GFF3357	0.50	+1.2
3,407,550	-		GFF3357	0.50	-1.1
3,407,575	+		GFF3357	0.52	-1.5
3,407,581	-		GFF3357	0.52	-0.1
3,407,581	-		GFF3357	0.52	+0.2
3,407,598	-		GFF3357	0.53	+1.0
3,407,600	+		GFF3357	0.53	-0.7
3,407,606	+		GFF3357	0.53	-2.0
3,407,619	+		GFF3357	0.54	+0.6
3,407,651	+		GFF3357	0.55	+0.1
3,407,669	-		GFF3357	0.56	-0.3
3,407,679	-		GFF3357	0.57	+0.2
3,407,679	-		GFF3357	0.57	+0.0
3,407,685	-		GFF3357	0.57	+0.1
3,407,689	+		GFF3357	0.57	+0.6
3,407,699	+		GFF3357	0.58	+0.2
3,407,707	-		GFF3357	0.58	-0.1
3,407,718	+		GFF3357	0.58	-1.1
3,407,728	-		GFF3357	0.59	-0.7
3,407,733	+		GFF3357	0.59	+0.1
3,407,736	-		GFF3357	0.59	-0.5
3,407,737	+		GFF3357	0.59	-0.7
3,407,737	+		GFF3357	0.59	-0.7
3,407,741	-		GFF3357	0.60	+0.2
3,407,742	+		GFF3357	0.60	+1.6
3,407,742	+		GFF3357	0.60	-0.5
3,407,745	-		GFF3357	0.60	+0.3
3,407,745	-		GFF3357	0.60	+0.1
3,407,745	-		GFF3357	0.60	-0.6
3,407,750	-		GFF3357	0.60	-1.1
3,407,800	-		GFF3357	0.62	+0.1
3,407,811	+		GFF3357	0.63	+0.3
3,407,815	-		GFF3357	0.63	+0.2
3,407,820	-		GFF3357	0.63	+0.7
3,407,820	-		GFF3357	0.63	+0.2
3,407,820	-		GFF3357	0.63	+0.2
3,407,893	+		GFF3357	0.67	-2.6
3,407,917	+		GFF3357	0.68	+0.6
3,407,925	-		GFF3357	0.68	-0.0
3,407,926	+		GFF3357	0.68	-2.2
3,407,929	+		GFF3357	0.69	+0.6
3,407,934	-		GFF3357	0.69	-0.3
3,407,973	+		GFF3357	0.71	-0.1
3,407,976	+		GFF3357	0.71	+0.2
3,407,976	-		GFF3357	0.71	+0.6
3,407,978	-		GFF3357	0.71	-1.0
3,407,989	+		GFF3357	0.71	-1.4
3,408,009	-		GFF3357	0.72	-1.7
3,408,046	+		GFF3357	0.74	-0.1
3,408,048	+		GFF3357	0.74	+0.6
3,408,049	-		GFF3357	0.74	-1.1
3,408,067	+		GFF3357	0.75	-0.3
3,408,075	-		GFF3357	0.76	+0.5
3,408,080	-		GFF3357	0.76	-1.3
3,408,080	-		GFF3357	0.76	-0.7
3,408,099	-		GFF3357	0.77	+0.5
3,408,120	+		GFF3357	0.78	+0.2
3,408,183	-		GFF3357	0.81	-0.8
3,408,190	+		GFF3357	0.81	-0.9
3,408,200	-		GFF3357	0.82	-1.5
3,408,209	+		GFF3357	0.82	+0.8
3,408,236	-		GFF3357	0.83	-1.8
3,408,245	+		GFF3357	0.84	-1.5
3,408,327	-		GFF3357	0.88	+0.6
3,408,349	+		GFF3357	0.89	-1.5
3,408,349	+		GFF3357	0.89	+1.3
3,408,351	+		GFF3357	0.89	-1.4
3,408,351	+		GFF3357	0.89	+0.5
3,408,351	+		GFF3357	0.89	+0.6
3,408,374	+		GFF3357	0.90	-1.2
3,408,374	+		GFF3357	0.90	+0.7
3,408,382	-				-1.8
3,408,389	+				+0.2
3,408,389	+				-0.5
3,408,389	+				-1.1
3,408,399	+				-0.2
3,408,411	+				-0.3
3,408,430	+				+0.3
3,408,437	+				+0.7
3,408,438	-				-0.7
3,408,439	+				+0.6
3,408,475	-				+0.3
3,408,480	-				-0.3
3,408,484	+				+0.5
3,408,485	-				+0.2
3,408,497	-				+0.2
3,408,503	+				-1.3
3,408,511	-				-0.3
3,408,549	+				+0.2
3,408,550	+				-0.5
3,408,572	-				-0.5
3,408,579	+				-0.5
3,408,611	-				-0.8
3,408,628	+				-0.1
3,408,628	-				-0.4
3,408,630	+				-2.5
3,408,634	+				-1.4
3,408,636	-				+0.5
3,408,657	+		GFF3358	0.11	+0.6
3,408,732	+		GFF3358	0.22	-0.7
3,408,744	-		GFF3358	0.24	-2.2
3,408,769	+		GFF3358	0.27	-1.9
3,408,769	+		GFF3358	0.27	-1.7
3,408,769	+		GFF3358	0.27	-0.6
3,408,777	-		GFF3358	0.29	-1.5
3,408,777	-		GFF3358	0.29	+0.1
3,408,777	-		GFF3358	0.29	-0.8
3,408,777	-		GFF3358	0.29	-0.5
3,408,779	+		GFF3358	0.29	+0.6
3,408,783	-		GFF3358	0.29	+0.2
3,408,787	-		GFF3358	0.30	+0.6
3,408,809	+		GFF3358	0.33	-2.2
3,408,817	+		GFF3358	0.35	-0.7
3,408,822	+		GFF3358	0.35	-0.5
3,408,825	-		GFF3358	0.36	+0.2
3,408,827	+		GFF3358	0.36	+0.1
3,408,830	-		GFF3358	0.36	-0.3
3,408,830	-		GFF3358	0.36	+1.2
3,408,835	-		GFF3358	0.37	-0.7
3,408,846	+		GFF3358	0.39	-2.2
3,408,846	+		GFF3358	0.39	+0.3
3,408,846	+		GFF3358	0.39	-0.5
3,408,849	-		GFF3358	0.39	+0.4
3,408,854	-		GFF3358	0.40	-0.3
3,408,854	-		GFF3358	0.40	-1.0
3,408,854	-		GFF3358	0.40	-0.5
3,408,854	-		GFF3358	0.40	+0.2
3,408,854	-		GFF3358	0.40	+0.6
3,408,864	-		GFF3358	0.42	-0.0
3,408,864	-		GFF3358	0.42	+1.4
3,408,887	+		GFF3358	0.45	-0.2
3,408,894	+		GFF3358	0.46	-0.1
3,408,894	+		GFF3358	0.46	+1.1
3,408,894	+		GFF3358	0.46	+0.5
3,408,894	+		GFF3358	0.46	-1.4
3,408,894	+		GFF3358	0.46	+0.5
3,408,894	+		GFF3358	0.46	+1.0
3,408,894	+		GFF3358	0.46	-0.7
3,408,894	+		GFF3358	0.46	+0.8
3,408,894	+		GFF3358	0.46	+0.8
3,408,894	+		GFF3358	0.46	-0.3
3,408,896	+		GFF3358	0.46	+0.8
3,408,899	+		GFF3358	0.47	+0.7
3,408,899	+		GFF3358	0.47	+0.6
3,408,899	+		GFF3358	0.47	-1.8
3,408,899	+		GFF3358	0.47	+0.4
3,408,902	-		GFF3358	0.47	+0.2
3,408,904	+		GFF3358	0.47	-1.0
3,408,907	-		GFF3358	0.48	+0.9
3,408,907	-		GFF3358	0.48	-0.3
3,408,907	-		GFF3358	0.48	-0.5
3,408,907	-		GFF3358	0.48	-1.1
3,408,907	-		GFF3358	0.48	-0.2
3,408,907	-		GFF3358	0.48	-0.2
3,408,907	-		GFF3358	0.48	+1.0
3,408,907	-		GFF3358	0.48	-1.7
3,408,929	-		GFF3358	0.51	+0.8
3,408,949	-		GFF3358	0.54	+0.1
3,409,011	+		GFF3358	0.63	+0.8
3,409,021	+		GFF3358	0.65	-0.2
3,409,021	+		GFF3358	0.65	-0.5
3,409,021	-		GFF3358	0.65	-1.9
3,409,068	+		GFF3358	0.72	+0.1
3,409,071	+		GFF3358	0.72	-1.1
3,409,071	+		GFF3358	0.72	-0.1
3,409,071	+		GFF3358	0.72	-0.3
3,409,079	-		GFF3358	0.74	-1.9
3,409,084	-		GFF3358	0.74	-0.1
3,409,084	-		GFF3358	0.74	-0.7
3,409,084	-		GFF3358	0.74	-1.5
3,409,101	+		GFF3358	0.77	+0.5
3,409,101	+		GFF3358	0.77	-0.8
3,409,106	-		GFF3358	0.78	+0.7
3,409,107	+		GFF3358	0.78	-0.3
3,409,107	+		GFF3358	0.78	-0.6
3,409,115	-		GFF3358	0.79	+1.2
3,409,138	-		GFF3358	0.82	+0.9
3,409,146	-		GFF3358	0.83	-0.3
3,409,149	+		GFF3358	0.84	-2.1
3,409,213	-				-0.5
3,409,223	-				+0.9
3,409,228	-				-0.9
3,409,228	-				-1.2
3,409,234	-				+0.6
3,409,234	-				-0.2
3,409,234	-				+0.8
3,409,252	+				-1.3
3,409,257	+				+0.5
3,409,257	+				-1.0
3,409,265	+				-0.7
3,409,265	-				+0.7
3,409,265	-				-0.3
3,409,265	-				+0.1
3,409,265	-				-1.3
3,409,267	+				-0.7
3,409,275	-				-0.7
3,409,283	-				-1.5
3,409,290	+				-0.9
3,409,295	+				-0.3
3,409,298	-				-0.4
3,409,303	-				+0.2
3,409,303	-				+0.7
3,409,315	+				-0.8
3,409,320	-				+1.0
3,409,361	-		GFF3359	0.12	+0.6
3,409,367	-		GFF3359	0.13	-1.4
3,409,381	+		GFF3359	0.15	+0.6
3,409,389	-		GFF3359	0.16	-2.0
3,409,391	-		GFF3359	0.16	+0.7
3,409,395	+		GFF3359	0.16	-0.5
3,409,395	+		GFF3359	0.16	+0.6
3,409,396	-		GFF3359	0.16	-1.9
3,409,403	-		GFF3359	0.17	+0.5
3,409,403	-		GFF3359	0.17	+0.3
3,409,453	-		GFF3359	0.23	-1.2
3,409,468	-		GFF3359	0.25	+1.0
3,409,473	-		GFF3359	0.25	-0.5
3,409,493	+		GFF3359	0.28	-0.8
3,409,493	+		GFF3359	0.28	+0.2
3,409,498	+		GFF3359	0.28	+0.2
3,409,498	+		GFF3359	0.28	-1.1
3,409,501	-		GFF3359	0.29	+0.6
3,409,514	+		GFF3359	0.30	-0.2
3,409,514	+		GFF3359	0.30	-1.7
3,409,522	-		GFF3359	0.31	+0.7
3,409,529	-		GFF3359	0.32	-0.6
3,409,541	+		GFF3359	0.33	-2.3
3,409,541	+		GFF3359	0.33	+0.1
3,409,541	+		GFF3359	0.33	+0.5
3,409,546	+		GFF3359	0.34	-1.2
3,409,549	-		GFF3359	0.34	+0.3
3,409,549	-		GFF3359	0.34	+0.5
3,409,557	+		GFF3359	0.35	+0.4
3,409,562	+		GFF3359	0.36	-1.2
3,409,565	-		GFF3359	0.36	-0.8
3,409,570	-		GFF3359	0.36	+0.3
3,409,583	-		GFF3359	0.38	+0.5