Strain Fitness in Sphingobium sp. HT1-2 around GFF3354

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,402,029	-		GFF3352	0.82	-0.6
3,402,029	-		GFF3352	0.82	+0.0
3,402,029	-		GFF3352	0.82	+0.4
3,402,029	-		GFF3352	0.82	-0.9
3,402,041	-		GFF3352	0.83	-0.9
3,402,046	+		GFF3352	0.83	+0.4
3,402,054	-		GFF3352	0.83	-1.8
3,402,108	-		GFF3352	0.86	+0.7
3,402,108	-		GFF3352	0.86	-0.1
3,402,108	-		GFF3352	0.86	+0.0
3,402,108	-		GFF3352	0.86	-0.8
3,402,116	-		GFF3352	0.86	-0.1
3,402,181	-		GFF3352	0.89	+0.1
3,402,181	-		GFF3352	0.89	-1.0
3,402,189	+		GFF3352	0.90	-0.7
3,402,189	+		GFF3352	0.90	-1.2
3,402,195	+		GFF3352	0.90	+0.3
3,402,195	+		GFF3352	0.90	-0.7
3,402,195	+		GFF3352	0.90	+0.6
3,402,195	+		GFF3352	0.90	+0.1
3,402,195	+		GFF3352	0.90	+1.1
3,402,195	+		GFF3352	0.90	-0.2
3,402,197	+				-0.5
3,402,197	-				-1.0
3,402,203	-				-0.4
3,402,203	-				-0.7
3,402,203	-				+0.0
3,402,205	-				-2.1
3,402,205	-				-0.1
3,402,213	-				-2.0
3,402,213	-				-0.8
3,402,213	-				+1.3
3,402,223	-				+0.7
3,402,243	+				-0.4
3,402,251	-				+0.4
3,402,266	+				+0.1
3,402,274	-				-1.8
3,402,281	+				+0.6
3,402,290	+				+0.1
3,402,298	-				+0.5
3,402,339	+				+0.3
3,402,344	+				+0.8
3,402,344	+				+0.0
3,402,344	+				-0.7
3,402,344	+				-0.5
3,402,347	-				-0.3
3,402,352	-				-0.4
3,402,352	-				-0.6
3,402,352	-				-0.5
3,402,352	-				+1.3
3,402,352	-				-0.2
3,402,352	-				+0.5
3,402,352	-				+1.5
3,402,368	-				+0.7
3,402,368	-				-0.1
3,402,400	+				-0.3
3,402,405	-				-2.7
3,402,407	+				+0.3
3,402,439	+				-3.3
3,402,488	+				-1.9
3,402,488	+				-2.8
3,402,488	+				+0.4
3,402,493	+				-0.4
3,402,493	+				+0.0
3,402,493	+				-0.2
3,402,493	+				-0.7
3,402,493	+				-1.0
3,402,496	-				+0.2
3,402,496	-				+0.1
3,402,496	-				-0.6
3,402,501	-				-0.6
3,402,503	+				+0.5
3,402,503	+				+0.5
3,402,506	-				-0.3
3,402,510	+				-1.2
3,402,515	+				-0.9
3,402,523	-				+0.6
3,402,586	+		GFF3353	0.22	-0.5
3,402,586	+		GFF3353	0.22	+1.0
3,402,586	+		GFF3353	0.22	-0.6
3,402,618	-		GFF3353	0.30	-0.6
3,402,639	+		GFF3353	0.35	-0.4
3,402,662	-		GFF3353	0.41	-1.3
3,402,668	-		GFF3353	0.42	+1.0
3,402,702	-		GFF3353	0.51	+0.6
3,402,707	-		GFF3353	0.52	-0.9
3,402,738	-		GFF3353	0.60	-0.3
3,402,738	-		GFF3353	0.60	-0.3
3,402,741	-		GFF3353	0.60	-0.2
3,402,741	-		GFF3353	0.60	-0.2
3,402,764	-		GFF3353	0.66	-0.7
3,402,764	-		GFF3353	0.66	+0.5
3,402,822	+		GFF3353	0.81	-0.9
3,402,822	+		GFF3353	0.81	-0.9
3,402,822	-		GFF3353	0.81	-1.1
3,402,824	+		GFF3353	0.81	-1.4
3,402,830	-		GFF3353	0.83	+0.2
3,402,841	+		GFF3353	0.85	-0.2
3,402,841	+		GFF3353	0.85	+0.8
3,402,845	-		GFF3353	0.86	-0.5
3,402,848	+		GFF3353	0.87	-0.2
3,402,861	+				-1.2
3,402,862	-				-0.2
3,402,868	-				-1.2
3,402,871	+				+0.4
3,402,879	-				-2.2
3,402,882	-				-0.9
3,402,884	-				-0.3
3,402,906	+				-0.1
3,402,910	+				+0.3
3,402,914	-				-1.0
3,402,914	-				-1.9
3,402,914	-				-0.6
3,402,914	-				+0.4
3,402,930	-				+1.0
3,402,944	+				-0.1
3,402,945	-				-0.3
3,402,948	+				+2.5
3,402,953	+				-0.1
3,402,961	-				-0.3
3,403,001	+				-0.9
3,403,041	-				-0.6
3,403,058	+				+1.3
3,403,074	-				-1.7
3,403,099	+				-0.9
3,403,152	+				+0.4
3,403,155	-				+0.1
3,403,160	-				-0.0
3,403,172	-				+1.1
3,403,176	+				-2.8
3,403,179	+				-1.7
3,403,198	-		GFF3354	0.11	-0.0
3,403,228	-		GFF3354	0.13	-1.7
3,403,228	-		GFF3354	0.13	+0.6
3,403,230	-		GFF3354	0.13	-1.7
3,403,230	-		GFF3354	0.13	+0.6
3,403,238	-		GFF3354	0.13	-0.9
3,403,262	+		GFF3354	0.15	-1.6
3,403,262	+		GFF3354	0.15	+0.3
3,403,262	+		GFF3354	0.15	-0.9
3,403,262	+		GFF3354	0.15	+0.2
3,403,264	+		GFF3354	0.15	+0.1
3,403,270	-		GFF3354	0.16	-1.6
3,403,270	-		GFF3354	0.16	-0.3
3,403,270	-		GFF3354	0.16	+0.2
3,403,272	-		GFF3354	0.16	-0.6
3,403,280	+		GFF3354	0.16	-0.6
3,403,288	-		GFF3354	0.17	-1.5
3,403,292	+		GFF3354	0.17	-0.4
3,403,292	+		GFF3354	0.17	-0.7
3,403,293	-		GFF3354	0.17	-1.0
3,403,300	-		GFF3354	0.17	-0.8
3,403,300	-		GFF3354	0.17	-0.2
3,403,318	-		GFF3354	0.19	-0.1
3,403,346	-		GFF3354	0.20	-0.5
3,403,351	+		GFF3354	0.21	-0.5
3,403,359	-		GFF3354	0.21	-1.3
3,403,359	-		GFF3354	0.21	-2.9
3,403,359	-		GFF3354	0.21	-0.3
3,403,359	-		GFF3354	0.21	+0.2
3,403,365	-		GFF3354	0.22	-0.4
3,403,407	-		GFF3354	0.24	+0.5
3,403,407	-		GFF3354	0.24	+0.0
3,403,445	-		GFF3354	0.27	-1.1
3,403,465	+		GFF3354	0.28	+0.6
3,403,478	+		GFF3354	0.29	-2.0
3,403,486	-		GFF3354	0.29	-0.2
3,403,490	+		GFF3354	0.30	-0.1
3,403,536	+		GFF3354	0.33	-0.7
3,403,559	+		GFF3354	0.34	-0.2
3,403,559	+		GFF3354	0.34	+1.5
3,403,559	+		GFF3354	0.34	-2.1
3,403,559	+		GFF3354	0.34	-0.9
3,403,559	+		GFF3354	0.34	+0.4
3,403,562	-		GFF3354	0.34	-1.9
3,403,565	+		GFF3354	0.34	-1.1
3,403,566	-		GFF3354	0.34	+0.7
3,403,567	-		GFF3354	0.35	-0.3
3,403,567	-		GFF3354	0.35	-1.3
3,403,567	-		GFF3354	0.35	-1.2
3,403,567	-		GFF3354	0.35	-0.8
3,403,567	-		GFF3354	0.35	-0.4
3,403,569	+		GFF3354	0.35	-0.8
3,403,569	+		GFF3354	0.35	-1.1
3,403,588	+		GFF3354	0.36	-0.2
3,403,588	+		GFF3354	0.36	-0.2
3,403,631	+		GFF3354	0.39	-0.1
3,403,631	+		GFF3354	0.39	-2.1
3,403,631	+		GFF3354	0.39	-0.4
3,403,631	+		GFF3354	0.39	-0.8
3,403,631	+		GFF3354	0.39	+0.0
3,403,631	+		GFF3354	0.39	+0.2
3,403,631	+		GFF3354	0.39	-0.1
3,403,637	-		GFF3354	0.39	-0.9
3,403,637	-		GFF3354	0.39	+0.3
3,403,637	-		GFF3354	0.39	+0.3
3,403,637	-		GFF3354	0.39	-1.1
3,403,639	-		GFF3354	0.39	+1.2
3,403,639	-		GFF3354	0.39	-1.1
3,403,639	-		GFF3354	0.39	-2.2
3,403,639	-		GFF3354	0.39	-1.3
3,403,639	-		GFF3354	0.39	+1.0
3,403,639	-		GFF3354	0.39	-0.6
3,403,639	-		GFF3354	0.39	-0.5
3,403,639	-		GFF3354	0.39	+0.5
3,403,644	-		GFF3354	0.39	-0.3
3,403,647	+		GFF3354	0.40	-1.0
3,403,655	-		GFF3354	0.40	+0.0
3,403,657	+		GFF3354	0.40	-0.1
3,403,665	-		GFF3354	0.41	-0.3
3,403,665	-		GFF3354	0.41	-1.8
3,403,681	+		GFF3354	0.42	-1.5
3,403,699	-		GFF3354	0.43	-0.4
3,403,699	-		GFF3354	0.43	-0.4
3,403,699	-		GFF3354	0.43	+0.3
3,403,712	+		GFF3354	0.44	-0.5
3,403,715	-		GFF3354	0.44	-0.4
3,403,715	-		GFF3354	0.44	+0.2
3,403,723	+		GFF3354	0.45	-0.8
3,403,724	-		GFF3354	0.45	-1.0
3,403,742	+		GFF3354	0.46	-1.2
3,403,742	+		GFF3354	0.46	-1.6
3,403,753	-		GFF3354	0.46	+0.8
3,403,753	-		GFF3354	0.46	-0.7
3,403,753	-		GFF3354	0.46	-1.6
3,403,769	+		GFF3354	0.47	-0.8
3,403,769	+		GFF3354	0.47	-1.2
3,403,794	+		GFF3354	0.49	+0.8
3,403,798	+		GFF3354	0.49	+0.6
3,403,798	+		GFF3354	0.49	-0.4
3,403,836	-		GFF3354	0.52	-0.8
3,403,879	+		GFF3354	0.55	-1.4
3,403,880	+		GFF3354	0.55	+0.2
3,403,887	-		GFF3354	0.55	+0.2
3,403,887	-		GFF3354	0.55	+1.2
3,403,887	-		GFF3354	0.55	-0.6
3,403,894	+		GFF3354	0.55	-1.4
3,403,908	-		GFF3354	0.56	-0.3
3,403,955	+		GFF3354	0.59	+0.0
3,403,965	+		GFF3354	0.60	-1.6
3,403,965	+		GFF3354	0.60	-1.6
3,403,965	+		GFF3354	0.60	-1.3
3,403,965	+		GFF3354	0.60	+0.2
3,403,973	+		GFF3354	0.61	+1.6
3,403,973	-		GFF3354	0.61	+0.9
3,403,973	-		GFF3354	0.61	+0.8
3,403,975	-		GFF3354	0.61	-1.2
3,403,975	-		GFF3354	0.61	+0.0
3,404,003	+		GFF3354	0.62	+0.2
3,404,003	+		GFF3354	0.62	-2.4
3,404,011	-		GFF3354	0.63	-0.2
3,404,011	-		GFF3354	0.63	-0.7
3,404,046	-		GFF3354	0.65	-0.6
3,404,046	-		GFF3354	0.65	-0.8
3,404,055	+		GFF3354	0.66	+0.4
3,404,082	+		GFF3354	0.67	+0.2
3,404,085	+		GFF3354	0.68	-0.3
3,404,096	-		GFF3354	0.68	+0.2
3,404,123	+		GFF3354	0.70	-0.8
3,404,132	-		GFF3354	0.71	+0.7
3,404,132	-		GFF3354	0.71	+0.0
3,404,156	-		GFF3354	0.72	-1.8
3,404,163	+		GFF3354	0.73	-1.2
3,404,163	-		GFF3354	0.73	+1.3
3,404,171	-		GFF3354	0.73	+1.2
3,404,171	-		GFF3354	0.73	-0.2
3,404,171	-		GFF3354	0.73	+0.1
3,404,171	-		GFF3354	0.73	-1.2
3,404,176	-		GFF3354	0.74	+0.6
3,404,181	+		GFF3354	0.74	-0.1
3,404,186	-		GFF3354	0.74	-1.0
3,404,199	+		GFF3354	0.75	-0.3
3,404,199	+		GFF3354	0.75	-0.5
3,404,199	+		GFF3354	0.75	-0.9
3,404,199	+		GFF3354	0.75	+0.3
3,404,199	+		GFF3354	0.75	-0.5
3,404,211	+		GFF3354	0.76	-0.1
3,404,211	+		GFF3354	0.76	-0.0
3,404,216	+		GFF3354	0.76	+0.9
3,404,216	+		GFF3354	0.76	-0.2
3,404,219	-		GFF3354	0.76	-1.0
3,404,219	-		GFF3354	0.76	+0.2
3,404,219	-		GFF3354	0.76	+0.3
3,404,268	-		GFF3354	0.79	-2.3
3,404,273	-		GFF3354	0.80	-2.2
3,404,290	+		GFF3354	0.81	-1.5
3,404,290	+		GFF3354	0.81	-1.7
3,404,292	-		GFF3354	0.81	-0.6
3,404,298	-		GFF3354	0.81	-1.6
3,404,301	+		GFF3354	0.82	-0.5
3,404,304	+		GFF3354	0.82	-0.6
3,404,304	+		GFF3354	0.82	+0.3
3,404,311	+		GFF3354	0.82	-0.6
3,404,311	+		GFF3354	0.82	-2.2
3,404,311	+		GFF3354	0.82	-1.0
3,404,312	-		GFF3354	0.82	-0.4
3,404,312	-		GFF3354	0.82	+1.1
3,404,317	+		GFF3354	0.83	-1.7
3,404,317	+		GFF3354	0.83	-1.1
3,404,317	+		GFF3354	0.83	+0.6
3,404,318	+		GFF3354	0.83	-0.1
3,404,319	-		GFF3354	0.83	+0.6
3,404,319	-		GFF3354	0.83	+1.3
3,404,319	-		GFF3354	0.83	-0.6
3,404,325	-		GFF3354	0.83	-1.9
3,404,331	-		GFF3354	0.83	-0.5
3,404,336	+		GFF3354	0.84	-0.9
3,404,360	+		GFF3354	0.85	+1.5
3,404,364	+		GFF3354	0.86	+0.1
3,404,368	-		GFF3354	0.86	+0.3
3,404,408	-		GFF3354	0.88	-0.4
3,404,424	+		GFF3354	0.89	+0.2
3,404,432	-		GFF3354	0.90	-1.7
3,404,472	+				-1.9
3,404,480	+				-0.6
3,404,488	+				+0.2
3,404,502	+				-1.8
3,404,504	-				+0.2
3,404,510	-				-0.1
3,404,519	-				+0.6
3,404,567	+				-0.7
3,404,567	+				-0.3
3,404,567	+				-0.5
3,404,567	+				-1.3
3,404,575	-				+0.7
3,404,575	-				-0.7
3,404,575	-				+0.2
3,404,575	-				-1.7
3,404,600	-				+0.0
3,404,600	-				+0.6
3,404,602	+				+0.0
3,404,612	+				+0.1
3,404,620	-				-2.1
3,404,620	-				+0.3
3,404,643	+				-1.8
3,404,683	+				-0.2
3,404,699	+				-0.7
3,404,699	-				-0.1
3,404,701	+				+0.5
3,404,701	+				-1.0
3,404,710	+				+0.2
3,404,720	-				-0.9
3,404,748	+				+1.1
3,404,771	+				+1.0
3,404,778	+				+0.5
3,404,779	-				-0.8
3,404,779	-				-0.6
3,404,788	+				+0.2
3,404,801	+				-0.5
3,404,805	-				-0.3
3,404,807	-				+0.0
3,404,809	-				+0.0
3,404,809	-				+0.7
3,404,811	-				+0.0
3,404,817	+				-0.6
3,404,825	-		GFF3355	0.11	-0.5
3,404,832	+		GFF3355	0.12	+0.2
3,404,851	+		GFF3355	0.14	+0.7
3,404,856	+		GFF3355	0.15	-1.1
3,404,857	-		GFF3355	0.15	-0.2
3,404,864	-		GFF3355	0.16	-0.7
3,404,884	+		GFF3355	0.19	-1.3
3,404,884	+		GFF3355	0.19	+0.0
3,404,892	-		GFF3355	0.20	-0.7
3,404,907	+		GFF3355	0.22	-0.2
3,404,915	-		GFF3355	0.23	-1.3
3,404,917	-		GFF3355	0.23	-1.3
3,404,917	-		GFF3355	0.23	-0.2
3,404,925	-		GFF3355	0.24	+0.5
3,404,935	-		GFF3355	0.25	-0.7
3,404,940	-		GFF3355	0.26	-0.0
3,404,942	+		GFF3355	0.26	-0.5
3,404,950	+		GFF3355	0.27	-0.3
3,404,961	+		GFF3355	0.29	-1.8
3,404,963	+		GFF3355	0.29	-0.8
3,404,971	-		GFF3355	0.30	-0.1
3,404,971	-		GFF3355	0.30	+0.3
3,404,971	-		GFF3355	0.30	+0.5
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3,405,563	-				+0.6
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