Strain Fitness in Sphingobium sp. HT1-2 around GFF3349

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,397,273	+		GFF3348	0.14	+1.5
3,397,303	-		GFF3348	0.16	-1.1
3,397,327	+		GFF3348	0.18	-1.7
3,397,327	+		GFF3348	0.18	-0.5
3,397,333	+		GFF3348	0.19	-1.9
3,397,334	+		GFF3348	0.19	-0.9
3,397,341	+		GFF3348	0.20	+0.5
3,397,341	+		GFF3348	0.20	-1.3
3,397,347	-		GFF3348	0.20	-1.3
3,397,349	-		GFF3348	0.20	-1.1
3,397,349	-		GFF3348	0.20	-0.5
3,397,349	-		GFF3348	0.20	-1.4
3,397,349	-		GFF3348	0.20	-1.3
3,397,349	-		GFF3348	0.20	-0.4
3,397,353	+		GFF3348	0.21	-0.5
3,397,361	+		GFF3348	0.21	+1.1
3,397,369	-		GFF3348	0.22	-0.6
3,397,372	+		GFF3348	0.22	-0.4
3,397,377	+		GFF3348	0.23	+0.0
3,397,383	+		GFF3348	0.23	+0.4
3,397,391	-		GFF3348	0.24	-2.7
3,397,438	+		GFF3348	0.28	-0.7
3,397,438	+		GFF3348	0.28	-0.2
3,397,438	+		GFF3348	0.28	-1.0
3,397,438	+		GFF3348	0.28	-1.4
3,397,438	+		GFF3348	0.28	+1.1
3,397,440	+		GFF3348	0.28	-0.1
3,397,444	-		GFF3348	0.29	-0.9
3,397,446	-		GFF3348	0.29	-0.3
3,397,446	-		GFF3348	0.29	-0.1
3,397,446	-		GFF3348	0.29	-0.5
3,397,446	-		GFF3348	0.29	-0.8
3,397,461	+		GFF3348	0.30	+0.3
3,397,496	-		GFF3348	0.33	-0.2
3,397,496	-		GFF3348	0.33	-2.3
3,397,545	-		GFF3348	0.38	+1.0
3,397,563	+		GFF3348	0.39	-0.7
3,397,563	+		GFF3348	0.39	-0.0
3,397,580	-		GFF3348	0.41	-0.9
3,397,582	+		GFF3348	0.41	+0.6
3,397,582	+		GFF3348	0.41	-0.7
3,397,582	+		GFF3348	0.41	+0.1
3,397,582	+		GFF3348	0.41	-1.7
3,397,582	+		GFF3348	0.41	+0.2
3,397,582	+		GFF3348	0.41	-0.9
3,397,582	+		GFF3348	0.41	-1.6
3,397,582	+		GFF3348	0.41	+1.8
3,397,582	+		GFF3348	0.41	+0.1
3,397,582	+		GFF3348	0.41	+0.1
3,397,582	+		GFF3348	0.41	-1.4
3,397,582	+		GFF3348	0.41	-1.6
3,397,590	-		GFF3348	0.42	+0.5
3,397,590	-		GFF3348	0.42	+0.1
3,397,590	-		GFF3348	0.42	+0.4
3,397,590	-		GFF3348	0.42	+0.3
3,397,590	-		GFF3348	0.42	+0.5
3,397,590	-		GFF3348	0.42	+0.2
3,397,590	-		GFF3348	0.42	-0.5
3,397,590	-		GFF3348	0.42	+0.1
3,397,590	-		GFF3348	0.42	-0.8
3,397,590	-		GFF3348	0.42	+0.1
3,397,590	-		GFF3348	0.42	-0.2
3,397,590	-		GFF3348	0.42	+0.6
3,397,633	+		GFF3348	0.45	-0.9
3,397,647	-		GFF3348	0.47	-1.2
3,397,647	-		GFF3348	0.47	-0.4
3,397,670	+		GFF3348	0.49	-0.3
3,397,687	-		GFF3348	0.50	+1.4
3,397,727	+		GFF3348	0.54	-0.6
3,397,729	+		GFF3348	0.54	+0.2
3,397,735	-		GFF3348	0.54	-0.6
3,397,735	-		GFF3348	0.54	-0.3
3,397,735	-		GFF3348	0.54	-1.3
3,397,737	+		GFF3348	0.55	-2.4
3,397,745	-		GFF3348	0.55	-0.1
3,397,786	-		GFF3348	0.59	+0.9
3,397,809	-		GFF3348	0.61	+1.4
3,397,827	+		GFF3348	0.63	+0.3
3,397,827	+		GFF3348	0.63	-0.9
3,397,827	+		GFF3348	0.63	-1.7
3,397,827	+		GFF3348	0.63	-0.7
3,397,827	+		GFF3348	0.63	+0.8
3,397,828	+		GFF3348	0.63	-1.0
3,397,830	-		GFF3348	0.63	-0.1
3,397,835	-		GFF3348	0.63	-1.8
3,397,835	-		GFF3348	0.63	-0.2
3,397,835	-		GFF3348	0.63	-0.1
3,397,835	-		GFF3348	0.63	-1.4
3,397,835	-		GFF3348	0.63	-0.9
3,397,837	+		GFF3348	0.63	+1.1
3,397,840	-		GFF3348	0.64	-0.4
3,397,845	-		GFF3348	0.64	+0.9
3,397,851	+		GFF3348	0.65	-2.0
3,397,851	+		GFF3348	0.65	-0.9
3,397,851	+		GFF3348	0.65	-0.7
3,397,859	-		GFF3348	0.65	+0.7
3,397,861	+		GFF3348	0.66	-1.1
3,397,884	-		GFF3348	0.68	+0.2
3,397,889	-		GFF3348	0.68	-0.7
3,397,891	-		GFF3348	0.68	-0.4
3,397,893	+		GFF3348	0.68	-0.6
3,397,901	-		GFF3348	0.69	+1.2
3,397,901	-		GFF3348	0.69	-0.5
3,397,901	-		GFF3348	0.69	-0.2
3,397,910	+		GFF3348	0.70	-0.2
3,397,910	+		GFF3348	0.70	-0.1
3,397,911	-		GFF3348	0.70	-1.5
3,397,929	+		GFF3348	0.72	-0.2
3,397,929	+		GFF3348	0.72	+1.0
3,397,929	+		GFF3348	0.72	-0.8
3,397,933	+		GFF3348	0.72	-0.0
3,397,947	+		GFF3348	0.73	-0.3
3,397,955	+		GFF3348	0.74	+0.9
3,397,974	-		GFF3348	0.75	+0.7
3,397,974	-		GFF3348	0.75	-0.5
3,397,976	-		GFF3348	0.76	-0.4
3,397,976	-		GFF3348	0.76	+0.1
3,397,989	+		GFF3348	0.77	+0.9
3,397,989	+		GFF3348	0.77	-0.4
3,397,993	-		GFF3348	0.77	-0.1
3,397,993	-		GFF3348	0.77	-0.4
3,397,997	-		GFF3348	0.78	-1.6
3,398,019	-		GFF3348	0.79	-0.2
3,398,049	+		GFF3348	0.82	+1.1
3,398,049	+		GFF3348	0.82	+0.5
3,398,057	-		GFF3348	0.83	-0.6
3,398,057	-		GFF3348	0.83	-1.0
3,398,100	+		GFF3348	0.87	-0.7
3,398,100	+		GFF3348	0.87	-1.6
3,398,100	+		GFF3348	0.87	-0.7
3,398,126	+		GFF3348	0.89	+1.0
3,398,173	+				+0.6
3,398,173	+				-1.0
3,398,173	+				-0.0
3,398,176	-				-1.9
3,398,200	+				-0.8
3,398,210	+				+0.7
3,398,216	-				-0.3
3,398,240	+				+0.0
3,398,272	-				-0.7
3,398,297	+		GFF3349	0.15	-0.4
3,398,304	+		GFF3349	0.18	+0.2
3,398,305	-		GFF3349	0.18	-0.2
3,398,332	-		GFF3349	0.27	+1.1
3,398,333	-		GFF3349	0.27	+0.0
3,398,354	+		GFF3349	0.34	-2.1
3,398,357	-		GFF3349	0.35	-0.2
3,398,359	+		GFF3349	0.36	-2.3
3,398,359	+		GFF3349	0.36	-0.1
3,398,383	+		GFF3349	0.44	+0.2
3,398,390	+		GFF3349	0.46	+1.1
3,398,396	-		GFF3349	0.48	-0.7
3,398,398	-		GFF3349	0.49	-0.7
3,398,414	-		GFF3349	0.55	+0.1
3,398,414	-		GFF3349	0.55	+0.1
3,398,444	+		GFF3349	0.65	+0.2
3,398,444	+		GFF3349	0.65	+0.4
3,398,444	-		GFF3349	0.65	-0.4
3,398,452	-		GFF3349	0.67	+0.6
3,398,459	-		GFF3349	0.70	-0.8
3,398,466	+		GFF3349	0.72	-0.6
3,398,466	+		GFF3349	0.72	-0.9
3,398,469	-		GFF3349	0.73	-1.3
3,398,469	-		GFF3349	0.73	-0.7
3,398,471	+		GFF3349	0.74	+0.2
3,398,471	+		GFF3349	0.74	+0.1
3,398,471	+		GFF3349	0.74	-2.1
3,398,471	+		GFF3349	0.74	+0.7
3,398,471	+		GFF3349	0.74	+0.6
3,398,474	-		GFF3349	0.75	-0.3
3,398,474	-		GFF3349	0.75	-0.4
3,398,476	+		GFF3349	0.75	-0.7
3,398,476	+		GFF3349	0.75	-0.4
3,398,476	+		GFF3349	0.75	+0.5
3,398,479	-		GFF3349	0.76	+0.6
3,398,483	+		GFF3349	0.78	-0.8
3,398,483	+		GFF3349	0.78	-1.9
3,398,484	-		GFF3349	0.78	+0.9
3,398,484	-		GFF3349	0.78	-0.2
3,398,488	+		GFF3349	0.79	-0.7
3,398,491	-		GFF3349	0.80	-0.6
3,398,491	-		GFF3349	0.80	-0.5
3,398,491	-		GFF3349	0.80	-0.5
3,398,514	+		GFF3349	0.88	+0.2
3,398,514	+		GFF3349	0.88	-1.7
3,398,514	+		GFF3349	0.88	-1.3
3,398,522	-				-0.6
3,398,522	-				-0.8
3,398,522	-				-0.2
3,398,529	+				+0.4
3,398,552	-				+0.5
3,398,558	+				-0.1
3,398,558	-				+0.4
3,398,558	-				-0.1
3,398,576	+				-1.9
3,398,576	+				-0.7
3,398,583	+				-0.2
3,398,583	+				-1.0
3,398,584	-				+0.2
3,398,584	-				+0.2
3,398,616	-				-0.7
3,398,618	-				-0.3
3,398,618	-				-0.2
3,398,659	-		GFF3350	0.18	+0.8
3,398,678	-		GFF3350	0.31	+0.4
3,398,683	+		GFF3350	0.35	+0.2
3,398,696	-		GFF3350	0.44	-1.4
3,398,697	-		GFF3350	0.44	+1.0
3,398,704	+		GFF3350	0.49	+0.7
3,398,717	+		GFF3350	0.58	-0.4
3,398,737	-		GFF3350	0.72	-0.3
3,398,764	-				+0.1
3,398,778	+				-1.0
3,398,778	+				-1.0
3,398,778	+				-2.8
3,398,778	+				+1.6
3,398,778	+				-0.8
3,398,778	+				-1.2
3,398,778	+				-0.9
3,398,778	+				-1.2
3,398,781	-				-3.1
3,398,786	-				-0.7
3,398,786	-				+0.3
3,398,786	-				+0.5
3,398,786	-				-0.4
3,398,786	-				+0.1
3,398,849	+				+1.5
3,398,857	-				-0.9
3,398,859	+				-1.1
3,398,859	+				-1.4
3,398,859	+				+0.7
3,398,862	-				-1.4
3,398,862	-				+1.1
3,398,866	+				-0.3
3,398,867	-				+0.1
3,398,867	-				-1.4
3,398,895	+				-1.9
3,398,914	+		GFF3351	0.10	-0.7
3,398,914	+		GFF3351	0.10	-0.1
3,398,922	-		GFF3351	0.11	-1.4
3,398,947	+		GFF3351	0.13	-0.0
3,398,966	+		GFF3351	0.14	+0.7
3,398,972	+		GFF3351	0.15	-0.9
3,398,973	+		GFF3351	0.15	-2.2
3,398,973	+		GFF3351	0.15	+0.1
3,398,981	-		GFF3351	0.15	-0.5
3,398,982	+		GFF3351	0.15	-0.8
3,398,990	-		GFF3351	0.16	+1.2
3,399,000	-		GFF3351	0.17	+0.3
3,399,008	-		GFF3351	0.17	-1.0
3,399,031	+		GFF3351	0.19	-0.7
3,399,047	+		GFF3351	0.21	-3.1
3,399,047	+		GFF3351	0.21	-1.2
3,399,047	+		GFF3351	0.21	+0.7
3,399,047	+		GFF3351	0.21	+0.4
3,399,055	-		GFF3351	0.21	-0.1
3,399,055	-		GFF3351	0.21	+0.5
3,399,055	-		GFF3351	0.21	+0.1
3,399,055	-		GFF3351	0.21	-1.7
3,399,055	-		GFF3351	0.21	+0.2
3,399,069	+		GFF3351	0.22	+0.3
3,399,073	-		GFF3351	0.23	+1.4
3,399,087	-		GFF3351	0.24	-1.7
3,399,087	-		GFF3351	0.24	-0.6
3,399,106	+		GFF3351	0.25	+0.2
3,399,109	-		GFF3351	0.25	+0.2
3,399,116	+		GFF3351	0.26	+0.9
3,399,116	-		GFF3351	0.26	-2.4
3,399,146	-		GFF3351	0.28	-0.9
3,399,196	+		GFF3351	0.32	-0.7
3,399,196	+		GFF3351	0.32	-0.8
3,399,196	+		GFF3351	0.32	+0.4
3,399,196	+		GFF3351	0.32	+0.1
3,399,196	+		GFF3351	0.32	-1.1
3,399,196	+		GFF3351	0.32	-1.7
3,399,196	+		GFF3351	0.32	+0.3
3,399,196	+		GFF3351	0.32	+0.8
3,399,196	+		GFF3351	0.32	-2.1
3,399,196	+		GFF3351	0.32	+0.2
3,399,196	+		GFF3351	0.32	-1.4
3,399,196	+		GFF3351	0.32	-2.3
3,399,196	+		GFF3351	0.32	+0.1
3,399,196	+		GFF3351	0.32	+0.1
3,399,196	+		GFF3351	0.32	-0.1
3,399,204	-		GFF3351	0.33	+0.6
3,399,204	-		GFF3351	0.33	-1.1
3,399,204	-		GFF3351	0.33	-2.8
3,399,204	-		GFF3351	0.33	+0.7
3,399,204	-		GFF3351	0.33	-2.1
3,399,204	-		GFF3351	0.33	-0.8
3,399,204	-		GFF3351	0.33	-1.2
3,399,204	-		GFF3351	0.33	-0.6
3,399,204	-		GFF3351	0.33	+1.1
3,399,220	+		GFF3351	0.34	+0.1
3,399,242	+		GFF3351	0.36	-0.4
3,399,244	+		GFF3351	0.36	+0.7
3,399,252	-		GFF3351	0.37	+0.1
3,399,252	-		GFF3351	0.37	+0.2
3,399,252	-		GFF3351	0.37	-0.5
3,399,253	-		GFF3351	0.37	-1.8
3,399,273	+		GFF3351	0.38	-1.1
3,399,280	-		GFF3351	0.39	-0.3
3,399,289	+		GFF3351	0.40	+0.2
3,399,294	+		GFF3351	0.40	+0.3
3,399,297	-		GFF3351	0.40	-1.4
3,399,297	-		GFF3351	0.40	+1.3
3,399,318	+		GFF3351	0.42	+0.6
3,399,340	-		GFF3351	0.44	+0.3
3,399,357	+		GFF3351	0.45	-1.2
3,399,360	-		GFF3351	0.45	-0.7
3,399,373	+		GFF3351	0.46	-0.2
3,399,380	+		GFF3351	0.47	-1.1
3,399,396	-		GFF3351	0.48	-0.3
3,399,424	+		GFF3351	0.50	-1.2
3,399,428	-		GFF3351	0.50	+0.4
3,399,444	-		GFF3351	0.52	-0.7
3,399,466	+		GFF3351	0.53	+0.4
3,399,467	-		GFF3351	0.54	+0.1
3,399,467	-		GFF3351	0.54	+1.6
3,399,468	+		GFF3351	0.54	-1.7
3,399,472	-		GFF3351	0.54	+0.8
3,399,476	-		GFF3351	0.54	-0.7
3,399,486	+		GFF3351	0.55	+0.1
3,399,491	+		GFF3351	0.55	-1.2
3,399,494	-		GFF3351	0.56	-0.7
3,399,499	-		GFF3351	0.56	+1.3
3,399,509	-		GFF3351	0.57	-0.6
3,399,517	-		GFF3351	0.57	+0.6
3,399,517	-		GFF3351	0.57	-0.5
3,399,527	+		GFF3351	0.58	-0.9
3,399,527	+		GFF3351	0.58	+0.7
3,399,532	-		GFF3351	0.59	-0.9
3,399,537	+		GFF3351	0.59	-0.3
3,399,545	-		GFF3351	0.60	+0.4