Strain Fitness in Sphingobium sp. HT1-2 around GFF3348

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,396,118	-		GFF3346	0.35	-0.7
3,396,123	+		GFF3346	0.36	-0.2
3,396,153	+		GFF3346	0.43	-1.3
3,396,153	+		GFF3346	0.43	-2.5
3,396,153	+		GFF3346	0.43	-0.3
3,396,153	+		GFF3346	0.43	-2.0
3,396,153	+		GFF3346	0.43	-1.6
3,396,153	+		GFF3346	0.43	-1.8
3,396,158	+		GFF3346	0.44	-0.7
3,396,159	+		GFF3346	0.44	-1.9
3,396,161	-		GFF3346	0.44	+0.3
3,396,166	-		GFF3346	0.45	-1.3
3,396,166	-		GFF3346	0.45	-1.1
3,396,166	-		GFF3346	0.45	-2.1
3,396,167	-		GFF3346	0.46	-0.3
3,396,178	+		GFF3346	0.48	-0.6
3,396,178	+		GFF3346	0.48	-0.0
3,396,178	+		GFF3346	0.48	+0.3
3,396,178	+		GFF3346	0.48	+0.1
3,396,178	+		GFF3346	0.48	+0.6
3,396,178	+		GFF3346	0.48	-1.5
3,396,181	-		GFF3346	0.49	-1.0
3,396,186	-		GFF3346	0.50	-1.1
3,396,186	-		GFF3346	0.50	-0.3
3,396,186	-		GFF3346	0.50	-0.7
3,396,191	-		GFF3346	0.51	-0.3
3,396,200	+		GFF3346	0.53	-0.9
3,396,218	-		GFF3346	0.56	-1.6
3,396,232	-		GFF3346	0.59	-2.5
3,396,261	+		GFF3346	0.66	+0.3
3,396,271	+		GFF3346	0.68	+0.3
3,396,271	+		GFF3346	0.68	-0.4
3,396,271	+		GFF3346	0.68	-0.6
3,396,271	+		GFF3346	0.68	+1.3
3,396,271	+		GFF3346	0.68	-0.1
3,396,271	+		GFF3346	0.68	-0.6
3,396,271	+		GFF3346	0.68	-0.5
3,396,271	+		GFF3346	0.68	-0.3
3,396,271	+		GFF3346	0.68	-0.8
3,396,271	+		GFF3346	0.68	-0.1
3,396,271	+		GFF3346	0.68	-0.9
3,396,271	+		GFF3346	0.68	-0.8
3,396,274	-		GFF3346	0.68	-1.8
3,396,278	-		GFF3346	0.69	-0.3
3,396,279	-		GFF3346	0.69	-1.8
3,396,279	-		GFF3346	0.69	+0.4
3,396,279	-		GFF3346	0.69	-2.4
3,396,279	-		GFF3346	0.69	+0.6
3,396,313	+		GFF3346	0.77	+0.7
3,396,330	+		GFF3346	0.80	-0.2
3,396,340	-		GFF3346	0.82	+0.1
3,396,362	-		GFF3346	0.87	-0.7
3,396,367	-		GFF3346	0.88	-0.9
3,396,378	-				-1.7
3,396,403	+				-1.7
3,396,406	-				-1.6
3,396,411	-				-1.1
3,396,423	+				-0.9
3,396,446	+				-0.6
3,396,465	-				-2.4
3,396,470	+				+0.4
3,396,524	+				+0.2
3,396,533	-				-0.2
3,396,546	+				-0.6
3,396,554	+				+1.0
3,396,554	-				+0.7
3,396,564	+		GFF3347	0.11	-0.2
3,396,572	-		GFF3347	0.12	+0.7
3,396,586	+		GFF3347	0.15	+0.0
3,396,586	+		GFF3347	0.15	+0.7
3,396,594	-		GFF3347	0.16	-2.3
3,396,640	+		GFF3347	0.23	+0.4
3,396,653	-		GFF3347	0.25	-1.3
3,396,655	+		GFF3347	0.26	-0.3
3,396,659	+		GFF3347	0.26	-2.0
3,396,663	-		GFF3347	0.27	-0.0
3,396,676	+		GFF3347	0.29	+0.3
3,396,681	+		GFF3347	0.30	-0.8
3,396,689	+		GFF3347	0.31	-0.8
3,396,701	+		GFF3347	0.33	-1.1
3,396,718	-		GFF3347	0.36	-1.3
3,396,757	+		GFF3347	0.42	-1.0
3,396,775	-		GFF3347	0.45	+1.0
3,396,775	-		GFF3347	0.45	+0.6
3,396,785	-		GFF3347	0.46	+0.1
3,396,785	-		GFF3347	0.46	-0.3
3,396,827	+		GFF3347	0.53	-1.8
3,396,834	-		GFF3347	0.54	+0.1
3,396,835	-		GFF3347	0.54	-0.7
3,396,845	+		GFF3347	0.56	-1.9
3,396,850	+		GFF3347	0.57	+1.1
3,396,850	+		GFF3347	0.57	+1.1
3,396,853	-		GFF3347	0.57	-0.3
3,396,858	-		GFF3347	0.58	-0.0
3,396,858	-		GFF3347	0.58	-0.4
3,396,858	-		GFF3347	0.58	-0.4
3,396,864	+		GFF3347	0.59	+0.5
3,396,870	+		GFF3347	0.60	-1.1
3,396,885	+		GFF3347	0.62	-0.2
3,396,885	+		GFF3347	0.62	-0.9
3,396,887	+		GFF3347	0.63	-0.0
3,396,887	+		GFF3347	0.63	-0.7
3,396,887	+		GFF3347	0.63	-0.5
3,396,893	-		GFF3347	0.63	+0.9
3,396,897	+		GFF3347	0.64	-0.7
3,396,898	-		GFF3347	0.64	-0.3
3,396,910	-		GFF3347	0.66	+0.0
3,396,932	-		GFF3347	0.70	+0.0
3,396,945	-		GFF3347	0.72	-1.9
3,396,945	-		GFF3347	0.72	-1.2
3,396,945	-		GFF3347	0.72	+0.4
3,397,031	+		GFF3347	0.85	-1.6
3,397,035	+		GFF3347	0.86	+0.4
3,397,035	+		GFF3347	0.86	+0.1
3,397,037	+		GFF3347	0.86	+0.4
3,397,043	-		GFF3347	0.87	+1.7
3,397,050	+		GFF3347	0.89	+0.2
3,397,058	-		GFF3347	0.90	+0.9
3,397,058	-		GFF3347	0.90	+1.6
3,397,060	-				-1.2
3,397,065	-				+0.4
3,397,105	-				-2.9
3,397,105	-				-0.3
3,397,112	+				+1.4
3,397,118	-				-0.1
3,397,146	-				+0.6
3,397,152	+				+0.1
3,397,152	+				-0.8
3,397,157	+				-1.4
3,397,160	-				+1.1
3,397,162	+				-2.5
3,397,162	+				+0.7
3,397,162	+				+0.2
3,397,162	+				-0.2
3,397,162	+				-0.4
3,397,162	+				-0.2
3,397,162	+				-0.6
3,397,162	+				-1.4
3,397,165	-				-0.7
3,397,165	-				+0.4
3,397,170	-				-0.3
3,397,170	-				-0.9
3,397,170	-				+0.1
3,397,170	-				-1.0
3,397,170	-				-1.4
3,397,170	-				-0.5
3,397,177	-				+0.3
3,397,194	+				-0.2
3,397,202	-				+1.9
3,397,202	-				-1.1
3,397,203	-				+0.3
3,397,229	+				+1.3
3,397,230	+				-1.2
3,397,230	+				-1.0
3,397,230	+				-1.8
3,397,237	-		GFF3348	0.10	-0.7
3,397,238	-		GFF3348	0.11	+1.4
3,397,238	-		GFF3348	0.11	-0.0
3,397,238	-		GFF3348	0.11	-0.2
3,397,238	-		GFF3348	0.11	+1.0
3,397,238	-		GFF3348	0.11	+0.4
3,397,238	-		GFF3348	0.11	-1.4
3,397,238	-		GFF3348	0.11	+0.6
3,397,240	+		GFF3348	0.11	-0.9
3,397,240	+		GFF3348	0.11	+0.3
3,397,240	+		GFF3348	0.11	+0.1
3,397,240	+		GFF3348	0.11	-0.7
3,397,248	+		GFF3348	0.11	-1.1
3,397,248	-		GFF3348	0.11	+0.3
3,397,248	-		GFF3348	0.11	+0.8
3,397,248	-		GFF3348	0.11	-0.4
3,397,273	+		GFF3348	0.14	+1.5
3,397,303	-		GFF3348	0.16	-1.1
3,397,327	+		GFF3348	0.18	-1.7
3,397,327	+		GFF3348	0.18	-0.5
3,397,333	+		GFF3348	0.19	-1.9
3,397,334	+		GFF3348	0.19	-0.9
3,397,341	+		GFF3348	0.20	+0.5
3,397,341	+		GFF3348	0.20	-1.3
3,397,347	-		GFF3348	0.20	-1.3
3,397,349	-		GFF3348	0.20	-1.1
3,397,349	-		GFF3348	0.20	-0.5
3,397,349	-		GFF3348	0.20	-1.4
3,397,349	-		GFF3348	0.20	-1.3
3,397,349	-		GFF3348	0.20	-0.4
3,397,353	+		GFF3348	0.21	-0.5
3,397,361	+		GFF3348	0.21	+1.1
3,397,369	-		GFF3348	0.22	-0.6
3,397,372	+		GFF3348	0.22	-0.4
3,397,377	+		GFF3348	0.23	+0.0
3,397,383	+		GFF3348	0.23	+0.4
3,397,391	-		GFF3348	0.24	-2.7
3,397,438	+		GFF3348	0.28	-0.7
3,397,438	+		GFF3348	0.28	-0.2
3,397,438	+		GFF3348	0.28	-1.0
3,397,438	+		GFF3348	0.28	-1.4
3,397,438	+		GFF3348	0.28	+1.1
3,397,440	+		GFF3348	0.28	-0.1
3,397,444	-		GFF3348	0.29	-0.9
3,397,446	-		GFF3348	0.29	-0.3
3,397,446	-		GFF3348	0.29	-0.1
3,397,446	-		GFF3348	0.29	-0.5
3,397,446	-		GFF3348	0.29	-0.8
3,397,461	+		GFF3348	0.30	+0.3
3,397,496	-		GFF3348	0.33	-0.2
3,397,496	-		GFF3348	0.33	-2.3
3,397,545	-		GFF3348	0.38	+1.0
3,397,563	+		GFF3348	0.39	-0.7
3,397,563	+		GFF3348	0.39	-0.0
3,397,580	-		GFF3348	0.41	-0.9
3,397,582	+		GFF3348	0.41	+0.6
3,397,582	+		GFF3348	0.41	-0.7
3,397,582	+		GFF3348	0.41	+0.1
3,397,582	+		GFF3348	0.41	-1.7
3,397,582	+		GFF3348	0.41	+0.2
3,397,582	+		GFF3348	0.41	-0.9
3,397,582	+		GFF3348	0.41	-1.6
3,397,582	+		GFF3348	0.41	+1.8
3,397,582	+		GFF3348	0.41	+0.1
3,397,582	+		GFF3348	0.41	+0.1
3,397,582	+		GFF3348	0.41	-1.4
3,397,582	+		GFF3348	0.41	-1.6
3,397,590	-		GFF3348	0.42	+0.5
3,397,590	-		GFF3348	0.42	+0.1
3,397,590	-		GFF3348	0.42	+0.4
3,397,590	-		GFF3348	0.42	+0.3
3,397,590	-		GFF3348	0.42	+0.5
3,397,590	-		GFF3348	0.42	+0.2
3,397,590	-		GFF3348	0.42	-0.5
3,397,590	-		GFF3348	0.42	+0.1
3,397,590	-		GFF3348	0.42	-0.8
3,397,590	-		GFF3348	0.42	+0.1
3,397,590	-		GFF3348	0.42	-0.2
3,397,590	-		GFF3348	0.42	+0.6
3,397,633	+		GFF3348	0.45	-0.9
3,397,647	-		GFF3348	0.47	-1.2
3,397,647	-		GFF3348	0.47	-0.4
3,397,670	+		GFF3348	0.49	-0.3
3,397,687	-		GFF3348	0.50	+1.4
3,397,727	+		GFF3348	0.54	-0.6
3,397,729	+		GFF3348	0.54	+0.2
3,397,735	-		GFF3348	0.54	-0.6
3,397,735	-		GFF3348	0.54	-0.3
3,397,735	-		GFF3348	0.54	-1.3
3,397,737	+		GFF3348	0.55	-2.4
3,397,745	-		GFF3348	0.55	-0.1
3,397,786	-		GFF3348	0.59	+0.9
3,397,809	-		GFF3348	0.61	+1.4
3,397,827	+		GFF3348	0.63	+0.3
3,397,827	+		GFF3348	0.63	-0.9
3,397,827	+		GFF3348	0.63	-1.7
3,397,827	+		GFF3348	0.63	-0.7
3,397,827	+		GFF3348	0.63	+0.8
3,397,828	+		GFF3348	0.63	-1.0
3,397,830	-		GFF3348	0.63	-0.1
3,397,835	-		GFF3348	0.63	-1.8
3,397,835	-		GFF3348	0.63	-0.2
3,397,835	-		GFF3348	0.63	-0.1
3,397,835	-		GFF3348	0.63	-1.4
3,397,835	-		GFF3348	0.63	-0.9
3,397,837	+		GFF3348	0.63	+1.1
3,397,840	-		GFF3348	0.64	-0.4
3,397,845	-		GFF3348	0.64	+0.9
3,397,851	+		GFF3348	0.65	-2.0
3,397,851	+		GFF3348	0.65	-0.9
3,397,851	+		GFF3348	0.65	-0.7
3,397,859	-		GFF3348	0.65	+0.7
3,397,861	+		GFF3348	0.66	-1.1
3,397,884	-		GFF3348	0.68	+0.2
3,397,889	-		GFF3348	0.68	-0.7
3,397,891	-		GFF3348	0.68	-0.4
3,397,893	+		GFF3348	0.68	-0.6
3,397,901	-		GFF3348	0.69	+1.2
3,397,901	-		GFF3348	0.69	-0.5
3,397,901	-		GFF3348	0.69	-0.2
3,397,910	+		GFF3348	0.70	-0.2
3,397,910	+		GFF3348	0.70	-0.1
3,397,911	-		GFF3348	0.70	-1.5
3,397,929	+		GFF3348	0.72	-0.2
3,397,929	+		GFF3348	0.72	+1.0
3,397,929	+		GFF3348	0.72	-0.8
3,397,933	+		GFF3348	0.72	-0.0
3,397,947	+		GFF3348	0.73	-0.3
3,397,955	+		GFF3348	0.74	+0.9
3,397,974	-		GFF3348	0.75	+0.7
3,397,974	-		GFF3348	0.75	-0.5
3,397,976	-		GFF3348	0.76	-0.4
3,397,976	-		GFF3348	0.76	+0.1
3,397,989	+		GFF3348	0.77	+0.9
3,397,989	+		GFF3348	0.77	-0.4
3,397,993	-		GFF3348	0.77	-0.1
3,397,993	-		GFF3348	0.77	-0.4
3,397,997	-		GFF3348	0.78	-1.6
3,398,019	-		GFF3348	0.79	-0.2
3,398,049	+		GFF3348	0.82	+1.1
3,398,049	+		GFF3348	0.82	+0.5
3,398,057	-		GFF3348	0.83	-0.6
3,398,057	-		GFF3348	0.83	-1.0
3,398,100	+		GFF3348	0.87	-0.7
3,398,100	+		GFF3348	0.87	-1.6
3,398,100	+		GFF3348	0.87	-0.7
3,398,126	+		GFF3348	0.89	+1.0
3,398,173	+				+0.6
3,398,173	+				-1.0
3,398,173	+				-0.0
3,398,176	-				-1.9
3,398,200	+				-0.8
3,398,210	+				+0.7
3,398,216	-				-0.3
3,398,240	+				+0.0
3,398,272	-				-0.7
3,398,297	+		GFF3349	0.15	-0.4
3,398,304	+		GFF3349	0.18	+0.2
3,398,305	-		GFF3349	0.18	-0.2
3,398,332	-		GFF3349	0.27	+1.1
3,398,333	-		GFF3349	0.27	+0.0
3,398,354	+		GFF3349	0.34	-2.1
3,398,357	-		GFF3349	0.35	-0.2
3,398,359	+		GFF3349	0.36	-2.3
3,398,359	+		GFF3349	0.36	-0.1
3,398,383	+		GFF3349	0.44	+0.2
3,398,390	+		GFF3349	0.46	+1.1
3,398,396	-		GFF3349	0.48	-0.7
3,398,398	-		GFF3349	0.49	-0.7
3,398,414	-		GFF3349	0.55	+0.1
3,398,414	-		GFF3349	0.55	+0.1
3,398,444	+		GFF3349	0.65	+0.2
3,398,444	+		GFF3349	0.65	+0.4
3,398,444	-		GFF3349	0.65	-0.4
3,398,452	-		GFF3349	0.67	+0.6
3,398,459	-		GFF3349	0.70	-0.8
3,398,466	+		GFF3349	0.72	-0.6
3,398,466	+		GFF3349	0.72	-0.9
3,398,469	-		GFF3349	0.73	-1.3
3,398,469	-		GFF3349	0.73	-0.7
3,398,471	+		GFF3349	0.74	+0.2
3,398,471	+		GFF3349	0.74	+0.1
3,398,471	+		GFF3349	0.74	-2.1
3,398,471	+		GFF3349	0.74	+0.7
3,398,471	+		GFF3349	0.74	+0.6
3,398,474	-		GFF3349	0.75	-0.3
3,398,474	-		GFF3349	0.75	-0.4
3,398,476	+		GFF3349	0.75	-0.7
3,398,476	+		GFF3349	0.75	-0.4
3,398,476	+		GFF3349	0.75	+0.5
3,398,479	-		GFF3349	0.76	+0.6
3,398,483	+		GFF3349	0.78	-0.8
3,398,483	+		GFF3349	0.78	-1.9
3,398,484	-		GFF3349	0.78	+0.9
3,398,484	-		GFF3349	0.78	-0.2
3,398,488	+		GFF3349	0.79	-0.7
3,398,491	-		GFF3349	0.80	-0.6
3,398,491	-		GFF3349	0.80	-0.5
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3,398,616	-				-0.7
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3,398,764	-				+0.1
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