Strain Fitness in Sphingobium sp. HT1-2 around GFF3342

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,391,555	-				-2.1
3,391,595	+				-1.0
3,391,606	-				+0.7
3,391,646	+		GFF3340	0.21	+0.3
3,391,657	+		GFF3340	0.24	-1.4
3,391,678	+		GFF3340	0.31	-1.7
3,391,678	+		GFF3340	0.31	-0.2
3,391,678	+		GFF3340	0.31	+0.4
3,391,678	+		GFF3340	0.31	-2.4
3,391,678	+		GFF3340	0.31	-0.8
3,391,678	+		GFF3340	0.31	-2.5
3,391,678	+		GFF3340	0.31	+0.3
3,391,678	+		GFF3340	0.31	-0.2
3,391,681	-		GFF3340	0.32	-0.6
3,391,686	-		GFF3340	0.33	+0.2
3,391,686	-		GFF3340	0.33	-1.1
3,391,686	-		GFF3340	0.33	+1.5
3,391,686	-		GFF3340	0.33	-1.2
3,391,686	-		GFF3340	0.33	-0.4
3,391,686	-		GFF3340	0.33	+0.0
3,391,718	+		GFF3340	0.43	+0.5
3,391,742	+		GFF3340	0.51	+0.0
3,391,742	+		GFF3340	0.51	-1.3
3,391,742	+		GFF3340	0.51	-1.3
3,391,789	-		GFF3340	0.65	-2.1
3,391,820	+		GFF3340	0.75	+0.3
3,391,911	-				+0.1
3,391,912	+				-1.8
3,391,912	+				+0.2
3,391,912	+				+0.5
3,391,912	+				+0.1
3,391,912	+				-1.7
3,391,913	-				-1.7
3,391,920	-				-0.4
3,391,920	-				+1.4
3,391,920	-				+0.3
3,391,920	-				-2.1
3,391,925	-				-0.2
3,391,927	-				-0.5
3,391,929	+				+0.0
3,391,935	-				+0.0
3,391,937	-				-1.2
3,391,950	+				+0.7
3,391,950	+				-1.4
3,391,950	+				-1.0
3,391,950	+				-0.1
3,391,950	+				-2.8
3,391,950	+				+0.3
3,391,950	+				-0.4
3,391,950	+				+0.8
3,391,950	+				+0.6
3,391,950	+				-0.3
3,391,950	+				+0.3
3,391,950	+				-1.5
3,391,950	+				-0.3
3,391,950	+				-0.2
3,391,950	+				+0.2
3,391,950	+				+0.0
3,391,950	+				-0.4
3,391,951	+				-0.8
3,391,951	+				-0.3
3,391,951	+				-1.9
3,391,958	-				-0.6
3,391,958	-				-1.6
3,391,958	-				-1.4
3,391,958	-				-0.9
3,391,958	-				-0.6
3,391,958	-				-0.6
3,391,958	-				+0.6
3,391,958	-				-1.4
3,391,958	-				-1.6
3,391,958	-				+0.4
3,391,958	-				-0.9
3,391,959	-				-0.8
3,391,959	-				-0.0
3,392,000	+				-1.9
3,392,006	-				+0.0
3,392,295	+				-0.3
3,392,329	-				+0.3
3,392,367	+				-0.4
3,392,367	+				-0.4
3,392,367	+				-0.4
3,392,375	-				+0.3
3,392,384	-				+0.8
3,392,397	-				-0.4
3,392,526	-				+0.1
3,392,554	-				-0.7
3,392,580	+				+0.3
3,392,583	+				-0.7
3,392,585	+				+0.4
3,392,592	+				-0.4
3,392,601	+				+0.1
3,392,635	+				-1.1
3,392,670	-				-0.4
3,392,681	+				-1.0
3,392,705	+				-0.9
3,392,705	+				-0.5
3,392,705	+				-1.8
3,392,705	+				-0.8
3,392,705	+				+0.4
3,392,713	-				-0.1
3,392,713	-				-1.3
3,392,713	-				+0.0
3,392,718	-				-1.9
3,392,718	-				-1.9
3,392,719	+				-0.4
3,392,725	+				+1.3
3,392,750	-		GFF3342	0.11	-0.3
3,392,750	-		GFF3342	0.11	+0.6
3,392,750	-		GFF3342	0.11	-2.3
3,392,752	+		GFF3342	0.11	-0.2
3,392,800	+		GFF3342	0.13	-1.1
3,392,808	-		GFF3342	0.14	-1.4
3,392,813	-		GFF3342	0.14	-0.5
3,392,831	+		GFF3342	0.15	+0.6
3,392,839	-		GFF3342	0.15	+0.4
3,392,839	-		GFF3342	0.15	-0.1
3,392,839	-		GFF3342	0.15	-0.6
3,392,842	+		GFF3342	0.15	-0.3
3,392,842	+		GFF3342	0.15	-1.4
3,392,849	-		GFF3342	0.16	-0.9
3,392,850	-		GFF3342	0.16	+0.1
3,392,850	-		GFF3342	0.16	-1.4
3,392,850	-		GFF3342	0.16	+0.5
3,392,850	-		GFF3342	0.16	-1.8
3,392,867	-		GFF3342	0.17	-1.3
3,392,867	-		GFF3342	0.17	+0.3
3,392,910	+		GFF3342	0.19	-1.0
3,392,923	+		GFF3342	0.20	-0.4
3,392,931	-		GFF3342	0.20	+0.9
3,392,931	-		GFF3342	0.20	-0.9
3,392,931	-		GFF3342	0.20	+0.6
3,392,957	+		GFF3342	0.22	-1.4
3,392,973	+		GFF3342	0.22	+0.6
3,392,973	+		GFF3342	0.22	-1.3
3,392,981	-		GFF3342	0.23	-0.0
3,393,015	+		GFF3342	0.25	-1.1
3,393,015	+		GFF3342	0.25	+0.2
3,393,020	+		GFF3342	0.25	-0.2
3,393,020	+		GFF3342	0.25	+0.3
3,393,020	+		GFF3342	0.25	+0.4
3,393,028	-		GFF3342	0.25	-0.8
3,393,028	-		GFF3342	0.25	-1.9
3,393,028	-		GFF3342	0.25	-0.5
3,393,028	-		GFF3342	0.25	-0.1
3,393,028	-		GFF3342	0.25	+0.7
3,393,050	+		GFF3342	0.26	-0.7
3,393,058	-		GFF3342	0.27	+0.0
3,393,058	-		GFF3342	0.27	-0.4
3,393,058	-		GFF3342	0.27	+0.7
3,393,058	-		GFF3342	0.27	+0.5
3,393,087	+		GFF3342	0.28	-0.2
3,393,124	+		GFF3342	0.30	-0.9
3,393,124	+		GFF3342	0.30	-1.8
3,393,124	+		GFF3342	0.30	-0.8
3,393,124	+		GFF3342	0.30	-0.2
3,393,124	+		GFF3342	0.30	+0.1
3,393,124	+		GFF3342	0.30	-0.8
3,393,132	-		GFF3342	0.31	-1.0
3,393,132	-		GFF3342	0.31	-0.8
3,393,132	-		GFF3342	0.31	+0.0
3,393,134	+		GFF3342	0.31	-0.6
3,393,134	+		GFF3342	0.31	-1.6
3,393,142	+		GFF3342	0.31	-0.6
3,393,144	+		GFF3342	0.31	-1.8
3,393,144	+		GFF3342	0.31	-1.9
3,393,144	+		GFF3342	0.31	+0.6
3,393,144	+		GFF3342	0.31	+1.6
3,393,144	+		GFF3342	0.31	-1.4
3,393,144	+		GFF3342	0.31	-0.8
3,393,144	+		GFF3342	0.31	-0.3
3,393,144	+		GFF3342	0.31	-0.9
3,393,144	+		GFF3342	0.31	-1.1
3,393,144	+		GFF3342	0.31	-0.3
3,393,144	+		GFF3342	0.31	+0.8
3,393,144	+		GFF3342	0.31	+1.4
3,393,144	+		GFF3342	0.31	-0.3
3,393,144	+		GFF3342	0.31	-0.4
3,393,144	+		GFF3342	0.31	-1.7
3,393,144	+		GFF3342	0.31	+0.9
3,393,144	+		GFF3342	0.31	-1.3
3,393,152	-		GFF3342	0.32	-0.3
3,393,152	-		GFF3342	0.32	+0.4
3,393,152	-		GFF3342	0.32	-2.6
3,393,152	-		GFF3342	0.32	-1.3
3,393,152	-		GFF3342	0.32	+0.3
3,393,152	-		GFF3342	0.32	-0.9
3,393,152	-		GFF3342	0.32	+1.0
3,393,152	-		GFF3342	0.32	-0.4
3,393,152	-		GFF3342	0.32	-1.3
3,393,152	-		GFF3342	0.32	-0.9
3,393,152	-		GFF3342	0.32	-0.3
3,393,152	-		GFF3342	0.32	+1.2
3,393,152	-		GFF3342	0.32	-0.1
3,393,152	-		GFF3342	0.32	+0.1
3,393,152	-		GFF3342	0.32	-0.3
3,393,152	-		GFF3342	0.32	+0.6
3,393,152	-		GFF3342	0.32	+1.4
3,393,152	-		GFF3342	0.32	-0.8
3,393,152	-		GFF3342	0.32	+0.6
3,393,152	-		GFF3342	0.32	-0.1
3,393,152	-		GFF3342	0.32	+0.7
3,393,179	+		GFF3342	0.33	-0.4
3,393,184	+		GFF3342	0.34	-1.2
3,393,184	+		GFF3342	0.34	-0.3
3,393,184	+		GFF3342	0.34	+0.2
3,393,184	+		GFF3342	0.34	-0.5
3,393,184	+		GFF3342	0.34	-0.3
3,393,184	+		GFF3342	0.34	-0.9
3,393,189	+		GFF3342	0.34	+1.4
3,393,192	-		GFF3342	0.34	-0.1
3,393,192	-		GFF3342	0.34	+0.4
3,393,192	-		GFF3342	0.34	-0.3
3,393,222	-		GFF3342	0.36	+0.1
3,393,251	+		GFF3342	0.37	-0.2
3,393,251	+		GFF3342	0.37	-0.3
3,393,262	+		GFF3342	0.38	-1.3
3,393,264	-		GFF3342	0.38	-0.0
3,393,277	+		GFF3342	0.39	-0.6
3,393,277	+		GFF3342	0.39	-1.2
3,393,277	+		GFF3342	0.39	+0.1
3,393,285	-		GFF3342	0.39	-0.4
3,393,298	+		GFF3342	0.40	-0.9
3,393,298	+		GFF3342	0.40	-1.1
3,393,310	-		GFF3342	0.40	-2.0
3,393,315	+		GFF3342	0.41	+0.7
3,393,315	+		GFF3342	0.41	+0.1
3,393,315	+		GFF3342	0.41	-0.6
3,393,315	+		GFF3342	0.41	-0.7
3,393,322	+		GFF3342	0.41	-2.3
3,393,323	-		GFF3342	0.41	-0.1
3,393,323	-		GFF3342	0.41	+0.1
3,393,323	-		GFF3342	0.41	-2.6
3,393,323	-		GFF3342	0.41	-0.3
3,393,334	+		GFF3342	0.42	+0.6
3,393,334	+		GFF3342	0.42	+1.1
3,393,334	+		GFF3342	0.42	-1.0
3,393,334	+		GFF3342	0.42	+0.1
3,393,342	-		GFF3342	0.42	-0.3
3,393,342	-		GFF3342	0.42	-0.9
3,393,342	-		GFF3342	0.42	-0.3
3,393,342	-		GFF3342	0.42	-0.7
3,393,342	-		GFF3342	0.42	-1.1
3,393,349	+		GFF3342	0.42	+0.8
3,393,349	+		GFF3342	0.42	-0.2
3,393,349	+		GFF3342	0.42	-0.5
3,393,357	-		GFF3342	0.43	+0.3
3,393,357	-		GFF3342	0.43	+0.4
3,393,357	-		GFF3342	0.43	+0.2
3,393,357	-		GFF3342	0.43	-0.4
3,393,382	-		GFF3342	0.44	+0.5
3,393,391	+		GFF3342	0.45	+0.2
3,393,402	+		GFF3342	0.45	-1.6
3,393,426	+		GFF3342	0.46	+0.8
3,393,426	-		GFF3342	0.46	+1.1
3,393,443	+		GFF3342	0.47	+0.9
3,393,457	+		GFF3342	0.48	-1.3
3,393,477	+		GFF3342	0.49	+0.9
3,393,570	+		GFF3342	0.54	-0.4
3,393,571	+		GFF3342	0.54	+0.6
3,393,574	-		GFF3342	0.54	+0.2
3,393,578	-		GFF3342	0.54	-0.8
3,393,579	-		GFF3342	0.55	+0.6
3,393,579	-		GFF3342	0.55	-0.3
3,393,584	+		GFF3342	0.55	-2.6
3,393,593	-		GFF3342	0.55	-1.2
3,393,595	+		GFF3342	0.55	+0.6
3,393,595	+		GFF3342	0.55	-0.4
3,393,603	-		GFF3342	0.56	+0.7
3,393,608	-		GFF3342	0.56	+1.1
3,393,616	+		GFF3342	0.56	-0.3
3,393,642	+		GFF3342	0.58	+0.7
3,393,642	+		GFF3342	0.58	-0.3
3,393,650	-		GFF3342	0.58	-1.5
3,393,652	+		GFF3342	0.58	-0.2
3,393,662	-		GFF3342	0.59	+0.3
3,393,681	+		GFF3342	0.60	-0.2
3,393,684	+		GFF3342	0.60	+0.8
3,393,689	-		GFF3342	0.60	-0.1
3,393,690	-		GFF3342	0.60	-0.2
3,393,692	-		GFF3342	0.61	-0.1
3,393,703	+		GFF3342	0.61	-0.1
3,393,703	+		GFF3342	0.61	+0.4
3,393,711	-		GFF3342	0.62	+0.3
3,393,743	+		GFF3342	0.63	-3.2
3,393,749	-		GFF3342	0.64	-0.7
3,393,791	-		GFF3342	0.66	+0.1
3,393,804	-		GFF3342	0.66	-0.2
3,393,805	+		GFF3342	0.67	+0.3
3,393,806	-		GFF3342	0.67	-1.7
3,393,806	-		GFF3342	0.67	+0.9
3,393,806	-		GFF3342	0.67	-0.8
3,393,819	-		GFF3342	0.67	+0.2
3,393,880	+		GFF3342	0.70	-0.3
3,393,884	+		GFF3342	0.71	-1.3
3,393,887	+		GFF3342	0.71	+0.1
3,393,894	-		GFF3342	0.71	+0.1
3,393,899	+		GFF3342	0.71	-1.0
3,393,901	+		GFF3342	0.72	-0.4
3,393,911	+		GFF3342	0.72	-0.4
3,393,929	+		GFF3342	0.73	+0.5
3,393,929	+		GFF3342	0.73	-0.6
3,393,929	+		GFF3342	0.73	+0.2
3,393,929	+		GFF3342	0.73	-0.2
3,393,929	+		GFF3342	0.73	-0.3
3,393,929	+		GFF3342	0.73	-1.8
3,393,937	-		GFF3342	0.74	+0.1
3,393,937	-		GFF3342	0.74	-1.9
3,393,950	+		GFF3342	0.74	-0.0
3,393,958	-		GFF3342	0.75	-0.3
3,393,978	-		GFF3342	0.76	-1.3
3,393,980	+		GFF3342	0.76	-0.3
3,393,988	-		GFF3342	0.76	-2.0
3,393,988	-		GFF3342	0.76	+1.3
3,394,029	-		GFF3342	0.78	+0.2
3,394,029	-		GFF3342	0.78	-1.6
3,394,031	+		GFF3342	0.78	+0.2
3,394,031	+		GFF3342	0.78	-2.0
3,394,039	-		GFF3342	0.79	-1.4
3,394,039	-		GFF3342	0.79	+0.3
3,394,039	-		GFF3342	0.79	+0.8
3,394,039	-		GFF3342	0.79	-0.8
3,394,039	-		GFF3342	0.79	-0.0
3,394,039	-		GFF3342	0.79	-0.6
3,394,039	-		GFF3342	0.79	-1.0
3,394,039	-		GFF3342	0.79	+0.6
3,394,041	+		GFF3342	0.79	+0.3
3,394,041	+		GFF3342	0.79	-0.7
3,394,043	+		GFF3342	0.79	+0.9
3,394,049	-		GFF3342	0.79	-0.2
3,394,051	+		GFF3342	0.80	-0.5
3,394,051	-		GFF3342	0.80	-2.2
3,394,067	-		GFF3342	0.80	-0.9
3,394,067	-		GFF3342	0.80	-0.9
3,394,093	+		GFF3342	0.82	+0.2
3,394,093	+		GFF3342	0.82	-0.2
3,394,093	+		GFF3342	0.82	-1.8
3,394,093	+		GFF3342	0.82	+0.1
3,394,098	+		GFF3342	0.82	+1.0
3,394,101	-		GFF3342	0.82	-0.1
3,394,101	-		GFF3342	0.82	+1.0
3,394,101	-		GFF3342	0.82	+1.4
3,394,103	+		GFF3342	0.82	-0.4
3,394,106	-		GFF3342	0.82	-0.4
3,394,106	-		GFF3342	0.82	-1.9
3,394,114	+		GFF3342	0.83	-0.8
3,394,114	+		GFF3342	0.83	-0.9
3,394,122	-		GFF3342	0.83	+0.5
3,394,140	-		GFF3342	0.84	-0.6
3,394,178	-		GFF3342	0.86	+0.2
3,394,199	+		GFF3342	0.87	-2.0
3,394,207	-		GFF3342	0.88	-1.4
3,394,211	+		GFF3342	0.88	-0.6
3,394,211	-		GFF3342	0.88	+0.7
3,394,217	+		GFF3342	0.88	-0.4
3,394,218	-		GFF3342	0.88	+0.4
3,394,219	-		GFF3342	0.88	+0.7
3,394,219	-		GFF3342	0.88	+1.0
3,394,242	+		GFF3342	0.90	-0.0
3,394,286	+				+1.2
3,394,294	+				-1.0
3,394,314	+				+0.3
3,394,322	-				-2.1
3,394,322	-				-1.3
3,394,354	+				-0.0
3,394,355	+				-1.2
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