Strain Fitness in Sphingobium sp. HT1-2 around GFF3327

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,379,771	+		GFF3325	0.82	+0.5
3,379,793	+		GFF3325	0.86	+1.1
3,379,793	+		GFF3325	0.86	-0.2
3,379,801	-		GFF3325	0.88	-1.6
3,379,824	+				-0.1
3,379,827	-				-0.4
3,379,827	-				-0.0
3,379,832	-				-0.4
3,379,839	+				+0.4
3,379,839	+				+0.1
3,379,839	+				+0.7
3,379,839	+				-0.9
3,379,839	+				+0.0
3,379,847	-				+1.3
3,379,847	-				-1.3
3,379,847	-				-0.4
3,379,847	-				+0.0
3,379,847	-				-0.4
3,379,847	-				+0.5
3,379,847	-				+1.3
3,379,847	-				+0.7
3,379,847	-				+1.4
3,379,860	+				-1.0
3,379,880	-				-1.9
3,379,880	-				-0.3
3,379,884	+				-0.4
3,379,894	+				-0.7
3,379,912	+				-1.5
3,379,950	-				+0.2
3,379,952	+				-0.1
3,379,952	+				-0.9
3,379,960	-		GFF3326	0.11	-1.5
3,379,960	-		GFF3326	0.11	-0.6
3,379,960	-		GFF3326	0.11	+0.9
3,379,960	-		GFF3326	0.11	-0.4
3,379,960	-		GFF3326	0.11	-2.5
3,379,962	+		GFF3326	0.11	+0.5
3,379,962	+		GFF3326	0.11	-0.5
3,379,962	+		GFF3326	0.11	-0.6
3,379,962	+		GFF3326	0.11	+0.1
3,379,963	+		GFF3326	0.11	-0.5
3,379,963	+		GFF3326	0.11	-2.6
3,379,963	+		GFF3326	0.11	-0.2
3,379,963	+		GFF3326	0.11	-2.3
3,379,968	+		GFF3326	0.12	-0.4
3,379,971	-		GFF3326	0.12	-0.1
3,379,971	-		GFF3326	0.12	-1.6
3,379,971	-		GFF3326	0.12	+0.0
3,379,971	-		GFF3326	0.12	-1.0
3,379,971	-		GFF3326	0.12	-0.2
3,379,971	-		GFF3326	0.12	-1.4
3,379,971	-		GFF3326	0.12	-0.5
3,379,971	-		GFF3326	0.12	+0.8
3,379,971	-		GFF3326	0.12	+0.2
3,379,981	+		GFF3326	0.13	-0.4
3,379,981	+		GFF3326	0.13	-0.4
3,379,989	-		GFF3326	0.14	+0.1
3,379,989	-		GFF3326	0.14	+0.3
3,380,020	-		GFF3326	0.17	-1.8
3,380,020	-		GFF3326	0.17	-0.8
3,380,042	-		GFF3326	0.20	-0.6
3,380,075	-		GFF3326	0.23	-0.1
3,380,075	-		GFF3326	0.23	-0.3
3,380,112	+		GFF3326	0.28	-0.4
3,380,115	+		GFF3326	0.28	+0.7
3,380,115	+		GFF3326	0.28	-0.3
3,380,133	+		GFF3326	0.30	-0.5
3,380,147	+		GFF3326	0.31	-0.3
3,380,147	-		GFF3326	0.31	-0.1
3,380,147	-		GFF3326	0.31	+0.9
3,380,147	-		GFF3326	0.31	+0.1
3,380,169	+		GFF3326	0.34	+0.8
3,380,223	+		GFF3326	0.40	+0.4
3,380,228	+		GFF3326	0.40	-2.1
3,380,228	+		GFF3326	0.40	-0.1
3,380,236	-		GFF3326	0.41	-1.4
3,380,236	-		GFF3326	0.41	+0.4
3,380,236	-		GFF3326	0.41	-2.3
3,380,236	-		GFF3326	0.41	+0.6
3,380,236	-		GFF3326	0.41	-0.4
3,380,239	+		GFF3326	0.42	-0.4
3,380,250	+		GFF3326	0.43	+1.3
3,380,253	-		GFF3326	0.43	+0.7
3,380,270	-		GFF3326	0.45	+0.3
3,380,277	-		GFF3326	0.46	+0.7
3,380,287	-		GFF3326	0.47	-0.3
3,380,318	+		GFF3326	0.50	-2.7
3,380,326	+		GFF3326	0.51	+0.1
3,380,361	-		GFF3326	0.55	+0.6
3,380,361	-		GFF3326	0.55	-1.0
3,380,370	+		GFF3326	0.56	+1.2
3,380,377	-		GFF3326	0.57	+1.0
3,380,383	-		GFF3326	0.58	-0.4
3,380,383	-		GFF3326	0.58	-1.0
3,380,383	-		GFF3326	0.58	+0.9
3,380,386	+		GFF3326	0.58	+0.4
3,380,391	+		GFF3326	0.58	+0.1
3,380,391	+		GFF3326	0.58	+0.8
3,380,421	+		GFF3326	0.62	-0.4
3,380,421	+		GFF3326	0.62	-2.0
3,380,421	+		GFF3326	0.62	+1.3
3,380,421	+		GFF3326	0.62	-1.4
3,380,426	+		GFF3326	0.62	+0.0
3,380,426	+		GFF3326	0.62	+1.1
3,380,426	+		GFF3326	0.62	-1.4
3,380,426	+		GFF3326	0.62	+0.8
3,380,426	+		GFF3326	0.62	-0.4
3,380,429	-		GFF3326	0.63	-0.8
3,380,429	-		GFF3326	0.63	+1.7
3,380,429	-		GFF3326	0.63	-0.6
3,380,434	-		GFF3326	0.63	-1.4
3,380,434	-		GFF3326	0.63	-0.9
3,380,434	-		GFF3326	0.63	-2.2
3,380,434	-		GFF3326	0.63	+1.8
3,380,434	-		GFF3326	0.63	+0.1
3,380,434	-		GFF3326	0.63	+0.6
3,380,470	+		GFF3326	0.67	+1.2
3,380,478	-		GFF3326	0.68	-0.1
3,380,478	-		GFF3326	0.68	+0.1
3,380,479	+		GFF3326	0.68	-1.9
3,380,480	+		GFF3326	0.68	-0.4
3,380,487	-		GFF3326	0.69	-0.7
3,380,493	-		GFF3326	0.70	-0.4
3,380,527	-		GFF3326	0.74	-1.4
3,380,549	+		GFF3326	0.76	-0.1
3,380,549	+		GFF3326	0.76	+0.2
3,380,554	+		GFF3326	0.77	+0.8
3,380,557	-		GFF3326	0.77	+0.7
3,380,568	+		GFF3326	0.78	-3.5
3,380,572	-		GFF3326	0.79	-0.1
3,380,576	-		GFF3326	0.79	-1.8
3,380,578	-		GFF3326	0.79	+0.6
3,380,584	+		GFF3326	0.80	+0.1
3,380,589	+		GFF3326	0.80	-0.2
3,380,594	+		GFF3326	0.81	-1.4
3,380,594	+		GFF3326	0.81	-0.7
3,380,602	-		GFF3326	0.82	+0.6
3,380,622	+		GFF3326	0.84	-0.0
3,380,623	-		GFF3326	0.84	+1.1
3,380,625	-		GFF3326	0.84	-1.6
3,380,627	+		GFF3326	0.85	+0.0
3,380,627	+		GFF3326	0.85	-0.0
3,380,628	+		GFF3326	0.85	+0.9
3,380,628	+		GFF3326	0.85	-0.1
3,380,628	+		GFF3326	0.85	+0.6
3,380,628	+		GFF3326	0.85	-1.7
3,380,636	-		GFF3326	0.86	+0.5
3,380,636	-		GFF3326	0.86	-0.3
3,380,656	+		GFF3326	0.88	+1.7
3,380,664	-		GFF3326	0.89	-1.0
3,380,664	-		GFF3326	0.89	-0.3
3,380,664	-		GFF3326	0.89	+0.2
3,380,664	-		GFF3326	0.89	+1.4
3,380,672	-		GFF3326	0.90	+0.3
3,380,687	-				-0.4
3,380,688	-				-0.4
3,380,703	-				+0.0
3,380,762	-				+0.9
3,380,795	+				-1.4
3,380,798	-				+1.0
3,380,798	-				+0.3
3,380,798	-				+0.1
3,380,798	-				-0.3
3,380,807	+				-0.3
3,380,837	-		GFF3327	0.10	+0.1
3,380,838	-		GFF3327	0.10	-1.6
3,380,878	+		GFF3327	0.16	+0.9
3,380,878	+		GFF3327	0.16	-0.7
3,380,878	+		GFF3327	0.16	+0.1
3,380,879	+		GFF3327	0.16	-0.5
3,380,886	-		GFF3327	0.17	+0.4
3,380,886	-		GFF3327	0.17	+0.6
3,380,886	-		GFF3327	0.17	-0.3
3,380,886	-		GFF3327	0.17	-0.4
3,380,889	-		GFF3327	0.17	-0.3
3,380,897	-		GFF3327	0.19	-0.3
3,380,904	+		GFF3327	0.20	-0.6
3,380,904	+		GFF3327	0.20	+2.1
3,380,912	-		GFF3327	0.21	+0.4
3,380,915	+		GFF3327	0.21	-1.6
3,380,915	+		GFF3327	0.21	+0.4
3,380,915	+		GFF3327	0.21	-0.7
3,380,920	-		GFF3327	0.22	-0.0
3,380,922	+		GFF3327	0.22	-0.2
3,380,923	+		GFF3327	0.22	+0.3
3,380,932	+		GFF3327	0.23	+0.3
3,380,937	+		GFF3327	0.24	-0.2
3,380,940	-		GFF3327	0.25	-0.9
3,380,948	+		GFF3327	0.26	-1.0
3,380,956	-		GFF3327	0.27	-0.1
3,380,977	+		GFF3327	0.30	+0.5
3,381,002	-		GFF3327	0.33	-0.1
3,381,005	+		GFF3327	0.34	-2.2
3,381,005	+		GFF3327	0.34	-1.4
3,381,013	-		GFF3327	0.35	+1.0
3,381,027	+		GFF3327	0.37	-0.1
3,381,028	-		GFF3327	0.37	-0.6
3,381,035	+		GFF3327	0.38	+0.4
3,381,043	-		GFF3327	0.39	+0.5
3,381,043	-		GFF3327	0.39	+0.1
3,381,043	-		GFF3327	0.39	+1.1
3,381,045	-		GFF3327	0.39	-0.6
3,381,048	-		GFF3327	0.40	-0.9
3,381,053	-		GFF3327	0.41	-0.6
3,381,053	-		GFF3327	0.41	-1.6
3,381,055	+		GFF3327	0.41	-0.1
3,381,055	+		GFF3327	0.41	+0.2
3,381,055	+		GFF3327	0.41	-1.7
3,381,055	+		GFF3327	0.41	+0.2
3,381,055	+		GFF3327	0.41	-1.8
3,381,063	-		GFF3327	0.42	-0.6
3,381,063	-		GFF3327	0.42	+0.2
3,381,076	-		GFF3327	0.44	-0.0
3,381,082	+		GFF3327	0.45	+0.0
3,381,083	+		GFF3327	0.45	-0.1
3,381,088	+		GFF3327	0.45	-0.5
3,381,088	+		GFF3327	0.45	+0.7
3,381,088	+		GFF3327	0.45	-0.2
3,381,088	+		GFF3327	0.45	-1.9
3,381,088	+		GFF3327	0.45	+0.8
3,381,088	+		GFF3327	0.45	-2.0
3,381,088	+		GFF3327	0.45	-0.1
3,381,088	+		GFF3327	0.45	-0.9
3,381,088	+		GFF3327	0.45	-0.1
3,381,088	+		GFF3327	0.45	-1.3
3,381,088	+		GFF3327	0.45	-0.5
3,381,091	-		GFF3327	0.46	+0.1
3,381,093	+		GFF3327	0.46	+0.4
3,381,093	+		GFF3327	0.46	-0.6
3,381,096	-		GFF3327	0.47	-1.4
3,381,096	-		GFF3327	0.47	-0.6
3,381,096	-		GFF3327	0.47	+0.1
3,381,096	-		GFF3327	0.47	+0.7
3,381,096	-		GFF3327	0.47	-1.1
3,381,096	-		GFF3327	0.47	-0.8
3,381,096	-		GFF3327	0.47	-2.3
3,381,096	-		GFF3327	0.47	-0.8
3,381,096	-		GFF3327	0.47	-0.8
3,381,096	-		GFF3327	0.47	-1.0
3,381,096	-		GFF3327	0.47	-0.3
3,381,096	-		GFF3327	0.47	+0.1
3,381,096	-		GFF3327	0.47	-0.0
3,381,096	-		GFF3327	0.47	+0.0
3,381,098	+		GFF3327	0.47	+0.6
3,381,101	-		GFF3327	0.47	-1.4
3,381,106	-		GFF3327	0.48	+0.0
3,381,167	-		GFF3327	0.57	+1.2
3,381,189	+		GFF3327	0.60	-0.1
3,381,195	-		GFF3327	0.60	+1.0
3,381,214	+		GFF3327	0.63	+0.1
3,381,238	+		GFF3327	0.67	+0.2
3,381,241	-		GFF3327	0.67	-1.5
3,381,257	+		GFF3327	0.69	+0.1
3,381,274	-		GFF3327	0.72	-0.3
3,381,279	-		GFF3327	0.72	-0.4
3,381,295	+		GFF3327	0.75	-0.7
3,381,318	+		GFF3327	0.78	+0.6
3,381,318	+		GFF3327	0.78	+0.4
3,381,318	+		GFF3327	0.78	+0.1
3,381,318	+		GFF3327	0.78	+0.5
3,381,318	+		GFF3327	0.78	-2.0
3,381,321	-		GFF3327	0.78	+1.3
3,381,326	-		GFF3327	0.79	+0.6
3,381,326	-		GFF3327	0.79	-1.0
3,381,326	-		GFF3327	0.79	-1.2
3,381,326	-		GFF3327	0.79	-0.1
3,381,326	-		GFF3327	0.79	+0.6
3,381,326	-		GFF3327	0.79	-0.6
3,381,326	-		GFF3327	0.79	-1.3
3,381,326	-		GFF3327	0.79	-0.0
3,381,326	-		GFF3327	0.79	-1.4
3,381,335	-		GFF3327	0.80	+0.3
3,381,337	+		GFF3327	0.80	-0.4
3,381,342	+		GFF3327	0.81	-1.4
3,381,342	+		GFF3327	0.81	+1.6
3,381,350	-		GFF3327	0.82	+0.3
3,381,352	+		GFF3327	0.83	-0.4
3,381,355	-		GFF3327	0.83	+0.0
3,381,358	+		GFF3327	0.83	-0.5
3,381,360	-		GFF3327	0.84	+1.7
3,381,362	+		GFF3327	0.84	+0.0
3,381,414	-				-0.2
3,381,415	+				+1.1
3,381,415	+				+0.5
3,381,423	-				+0.9
3,381,423	-				-0.8
3,381,425	+				-1.2
3,381,425	+				+1.6
3,381,425	+				-0.1
3,381,425	+				-1.4
3,381,425	+				-1.0
3,381,425	+				+0.5
3,381,425	+				+0.3
3,381,425	+				-0.7
3,381,425	+				+0.3
3,381,425	+				+0.7
3,381,425	+				+0.5
3,381,425	+				+0.9
3,381,425	+				-0.7
3,381,425	+				-0.4
3,381,425	+				-0.7
3,381,425	+				+0.0
3,381,425	+				+0.0
3,381,425	+				+0.6
3,381,432	+				+0.2
3,381,433	-				-0.1
3,381,433	-				-2.0
3,381,433	-				-0.7
3,381,433	-				+0.4
3,381,433	-				-0.3
3,381,433	-				-1.0
3,381,433	-				-0.1
3,381,433	-				+0.0
3,381,433	-				-0.1
3,381,433	-				-2.3
3,381,433	-				-1.1
3,381,433	-				-2.2
3,381,433	-				+0.3
3,381,433	-				+0.8
3,381,433	-				-0.9
3,381,433	-				+0.9
3,381,433	-				+0.6
3,381,433	-				-0.4
3,381,433	-				-0.9
3,381,433	-				+0.4
3,381,433	-				-1.1
3,381,433	-				-0.2
3,381,433	-				+1.6
3,381,440	-				+1.2
3,381,475	+				-0.2
3,381,498	+				+0.0
3,381,501	+				-0.2
3,381,501	+				+0.5
3,381,503	+				+0.3
3,381,506	-				-2.1
3,381,506	-				-0.7
3,381,509	-				+0.4
3,381,526	+				-0.1
3,381,526	+				+0.5
3,381,551	+				+0.7
3,381,598	-				-0.4
3,381,618	-				-0.3
3,381,659	+				-0.4
3,381,868	+		GFF3328	0.25	+0.3