Strain Fitness in Sphingobium sp. HT1-2 around GFF3248

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,301,981	+		GFF3245	0.75	+0.2
3,301,981	+		GFF3245	0.75	+0.6
3,301,981	+		GFF3245	0.75	-1.6
3,301,989	-		GFF3245	0.78	-0.7
3,301,989	-		GFF3245	0.78	-0.5
3,301,989	-		GFF3245	0.78	-1.9
3,301,989	-		GFF3245	0.78	-1.9
3,301,990	+		GFF3245	0.78	-0.2
3,302,007	+		GFF3245	0.84	-1.2
3,302,007	+		GFF3245	0.84	+1.8
3,302,007	+		GFF3245	0.84	+1.8
3,302,007	+		GFF3245	0.84	-1.9
3,302,007	+		GFF3245	0.84	+0.8
3,302,007	+		GFF3245	0.84	-0.6
3,302,007	+		GFF3245	0.84	-0.9
3,302,007	+		GFF3245	0.84	-0.4
3,302,007	+		GFF3245	0.84	-0.5
3,302,015	-		GFF3245	0.87	-1.4
3,302,015	-		GFF3245	0.87	-1.0
3,302,031	+				+0.6
3,302,031	+				-1.4
3,302,039	-				-0.2
3,302,039	-				+0.5
3,302,039	-				-0.4
3,302,039	-				-1.4
3,302,042	+				+0.3
3,302,056	-				-0.1
3,302,060	-				+0.5
3,302,062	+				-0.9
3,302,062	+				+0.3
3,302,062	+				-1.2
3,302,062	+				-0.5
3,302,064	+				-0.2
3,302,070	-				+0.6
3,302,070	-				-0.3
3,302,088	+				-0.4
3,302,088	+				-0.3
3,302,088	+				+1.2
3,302,088	+				-1.3
3,302,096	-				-0.6
3,302,123	+				-0.9
3,302,134	+				+0.0
3,302,142	-				-0.0
3,302,147	+				+1.2
3,302,153	+				-1.0
3,302,153	+				-0.9
3,302,159	+				-0.6
3,302,161	-				-1.9
3,302,482	-				+0.5
3,302,486	+				-1.3
3,302,487	+				-1.1
3,302,489	-				-1.6
3,302,495	-				+0.4
3,302,495	-				-0.9
3,302,496	+				+0.1
3,302,496	+				+1.0
3,302,496	+				+0.1
3,302,496	+				+0.6
3,302,496	+				-0.1
3,302,504	-				-2.6
3,302,504	-				+0.1
3,302,504	-				-0.4
3,302,510	+				-0.5
3,302,512	+				+0.0
3,302,518	-				-0.6
3,302,531	+				-0.4
3,302,536	+				+0.4
3,302,536	+				-0.7
3,302,544	-				+0.4
3,302,544	-				-1.8
3,302,597	+				-2.9
3,302,597	+				-1.9
3,302,602	+				+0.1
3,302,602	+				-0.5
3,302,605	-				-0.0
3,302,607	+				-1.1
3,302,610	-				-1.0
3,302,610	-				-0.6
3,302,641	+				+0.8
3,302,649	+				-0.7
3,302,649	-				+0.8
3,302,649	-				-0.4
3,302,657	-				-2.0
3,302,657	-				-1.6
3,302,666	+				+0.6
3,302,672	+				-0.8
3,302,680	-				-0.4
3,302,724	-		GFF3247	0.26	-0.5
3,302,726	-		GFF3247	0.27	+0.6
3,302,738	+		GFF3247	0.32	+0.7
3,302,766	+		GFF3247	0.43	-1.4
3,302,767	+		GFF3247	0.43	-2.2
3,302,774	+		GFF3247	0.46	+0.5
3,302,775	-		GFF3247	0.46	-0.4
3,302,793	+		GFF3247	0.53	+0.2
3,302,830	+		GFF3247	0.67	+0.8
3,302,838	-		GFF3247	0.71	-1.4
3,302,838	-		GFF3247	0.71	-0.5
3,302,838	-		GFF3247	0.71	-1.7
3,302,885	+		GFF3247	0.89	-0.3
3,302,885	+		GFF3247	0.89	+0.3
3,302,893	-				-0.4
3,302,893	-				-0.7
3,302,893	-				+0.2
3,302,893	-				-1.7
3,302,900	+				+1.0
3,302,903	-				-2.8
3,302,936	-				-2.8
3,302,944	-				-0.4
3,302,953	-				-1.9
3,302,953	-				-0.6
3,302,984	-				-0.1
3,302,985	-				-1.1
3,302,987	-				-0.1
3,302,995	+				-0.7
3,302,995	+				-2.2
3,303,002	+		GFF3248	0.11	+0.1
3,303,027	+		GFF3248	0.21	-0.9
3,303,068	-		GFF3248	0.38	-0.1
3,303,071	+		GFF3248	0.39	+0.9
3,303,071	+		GFF3248	0.39	-1.2
3,303,071	+		GFF3248	0.39	+0.4
3,303,071	+		GFF3248	0.39	-0.4
3,303,071	+		GFF3248	0.39	-0.8
3,303,071	+		GFF3248	0.39	-1.3
3,303,071	+		GFF3248	0.39	+1.0
3,303,072	-		GFF3248	0.39	+0.2
3,303,076	+		GFF3248	0.41	-1.6
3,303,079	-		GFF3248	0.42	+1.8
3,303,079	-		GFF3248	0.42	-0.4
3,303,079	-		GFF3248	0.42	+0.1
3,303,079	-		GFF3248	0.42	+1.6
3,303,089	-		GFF3248	0.46	-0.9
3,303,097	+		GFF3248	0.49	-1.5
3,303,104	+		GFF3248	0.52	-0.1
3,303,104	+		GFF3248	0.52	-0.7
3,303,104	+		GFF3248	0.52	+0.1
3,303,104	+		GFF3248	0.52	-0.3
3,303,111	-		GFF3248	0.55	+0.9
3,303,134	+		GFF3248	0.64	-2.0
3,303,141	+		GFF3248	0.67	+0.3
3,303,166	-		GFF3248	0.77	+0.8
3,303,182	+		GFF3248	0.84	+0.2
3,303,195	-		GFF3248	0.89	-0.4
3,303,200	-				+0.1
3,303,205	-				-0.4
3,303,216	+				-0.1
3,303,224	-				-0.4
3,303,232	-				-1.0
3,303,241	-				-0.4
3,303,273	+				+0.3
3,303,278	+				+0.4
3,303,286	-				-0.3
3,303,296	-				+0.9
3,303,306	+				-0.8
3,303,314	+				-0.8
3,303,316	-				-1.5
3,303,322	-				+0.1
3,303,328	+				-1.3
3,303,333	+				+0.5
3,303,341	-				-0.2
3,303,341	-				-0.1
3,303,341	-				+1.4
3,303,382	-				-0.5
3,303,451	-				-0.1
3,303,451	-				-0.0
3,303,451	-				-0.7
3,303,479	+				-1.2
3,303,479	+				+0.6
3,303,494	+				-1.8
3,303,512	-				-1.5
3,303,571	+				-0.1
3,303,571	+				-1.3
3,303,600	-		GFF3249	0.12	+0.6
3,303,600	-		GFF3249	0.12	+0.0
3,303,600	-		GFF3249	0.12	+0.6
3,303,600	-		GFF3249	0.12	+0.2
3,303,600	-		GFF3249	0.12	-0.1
3,303,615	-		GFF3249	0.14	+0.6
3,303,615	-		GFF3249	0.14	-1.1
3,303,617	+		GFF3249	0.14	-0.8
3,303,617	+		GFF3249	0.14	-0.5
3,303,625	-		GFF3249	0.14	+0.5
3,303,625	-		GFF3249	0.14	+0.1
3,303,653	+		GFF3249	0.17	-0.5
3,303,653	+		GFF3249	0.17	-2.4
3,303,660	+		GFF3249	0.17	+0.6
3,303,661	-		GFF3249	0.18	+0.0
3,303,668	-		GFF3249	0.18	-0.8
3,303,668	-		GFF3249	0.18	-0.2
3,303,668	-		GFF3249	0.18	-0.9
3,303,694	-		GFF3249	0.20	+0.1
3,303,696	+		GFF3249	0.21	+1.0
3,303,699	+		GFF3249	0.21	-0.6
3,303,716	+		GFF3249	0.22	-1.7
3,303,717	+		GFF3249	0.22	-0.1
3,303,724	-		GFF3249	0.23	+0.1
3,303,790	+		GFF3249	0.29	-0.4
3,303,790	+		GFF3249	0.29	-2.2
3,303,795	+		GFF3249	0.29	+0.4
3,303,800	+		GFF3249	0.29	+0.6
3,303,808	-		GFF3249	0.30	-0.1
3,303,808	-		GFF3249	0.30	-0.1
3,303,809	-		GFF3249	0.30	+0.4
3,303,816	+		GFF3249	0.31	-0.7
3,303,819	-		GFF3249	0.31	-0.3
3,303,825	+		GFF3249	0.32	+1.5
3,303,833	-		GFF3249	0.32	+0.2
3,303,838	-		GFF3249	0.33	+1.0
3,303,838	-		GFF3249	0.33	+0.8
3,303,844	+		GFF3249	0.33	+0.5
3,303,844	+		GFF3249	0.33	+0.1
3,303,844	+		GFF3249	0.33	-0.3
3,303,852	-		GFF3249	0.34	-1.3
3,303,852	-		GFF3249	0.34	+0.3
3,303,852	-		GFF3249	0.34	+0.1
3,303,865	+		GFF3249	0.35	+0.7
3,303,872	-		GFF3249	0.36	-0.3
3,303,872	-		GFF3249	0.36	+0.1
3,303,873	-		GFF3249	0.36	-1.3
3,303,873	-		GFF3249	0.36	-0.2
3,303,893	-		GFF3249	0.37	-1.4
3,303,894	-		GFF3249	0.37	-1.8
3,303,895	+		GFF3249	0.38	-1.7
3,303,905	-		GFF3249	0.38	-0.3
3,303,909	-		GFF3249	0.39	-2.6
3,303,909	-		GFF3249	0.39	-0.5
3,303,915	-		GFF3249	0.39	-0.5
3,303,918	+		GFF3249	0.39	-0.2
3,303,926	-		GFF3249	0.40	+0.0
3,303,940	-		GFF3249	0.41	+0.4
3,303,941	-		GFF3249	0.41	+1.4
3,303,943	+		GFF3249	0.42	+0.5
3,303,943	+		GFF3249	0.42	-0.9
3,303,951	-		GFF3249	0.42	-2.0
3,303,957	+		GFF3249	0.43	-0.6
3,303,957	+		GFF3249	0.43	-1.0
3,303,957	+		GFF3249	0.43	-0.6
3,303,962	+		GFF3249	0.43	+0.4
3,303,965	-		GFF3249	0.43	-1.3
3,303,965	-		GFF3249	0.43	-0.7
3,303,978	+		GFF3249	0.45	-0.5
3,303,978	+		GFF3249	0.45	-0.4
3,303,980	-		GFF3249	0.45	-0.4
3,303,986	-		GFF3249	0.45	+0.3
3,304,000	+		GFF3249	0.46	-2.6
3,304,003	-		GFF3249	0.47	+0.4
3,304,008	-		GFF3249	0.47	-1.8
3,304,023	+		GFF3249	0.48	-0.3
3,304,023	+		GFF3249	0.48	+0.4
3,304,036	+		GFF3249	0.50	-0.3
3,304,044	-		GFF3249	0.50	+0.3
3,304,081	+		GFF3249	0.53	+0.6
3,304,081	+		GFF3249	0.53	-0.3
3,304,082	+		GFF3249	0.53	-1.2
3,304,082	+		GFF3249	0.53	+1.0
3,304,082	+		GFF3249	0.53	-0.4
3,304,082	+		GFF3249	0.53	-0.5
3,304,082	+		GFF3249	0.53	-0.2
3,304,082	+		GFF3249	0.53	-0.1
3,304,082	+		GFF3249	0.53	+0.3
3,304,082	+		GFF3249	0.53	-1.3
3,304,082	+		GFF3249	0.53	+0.3
3,304,082	+		GFF3249	0.53	-0.1
3,304,082	+		GFF3249	0.53	+0.1
3,304,082	+		GFF3249	0.53	-0.1
3,304,082	+		GFF3249	0.53	-1.2
3,304,090	-		GFF3249	0.54	-0.8
3,304,090	-		GFF3249	0.54	+0.3
3,304,090	-		GFF3249	0.54	-0.1
3,304,090	-		GFF3249	0.54	-1.9
3,304,090	-		GFF3249	0.54	+1.3
3,304,090	-		GFF3249	0.54	+0.3
3,304,090	-		GFF3249	0.54	-0.2
3,304,090	-		GFF3249	0.54	-0.6
3,304,090	-		GFF3249	0.54	-0.0
3,304,090	-		GFF3249	0.54	-0.0
3,304,090	-		GFF3249	0.54	+1.4
3,304,097	+		GFF3249	0.55	-0.7
3,304,101	+		GFF3249	0.55	-2.7
3,304,101	+		GFF3249	0.55	+0.9
3,304,104	-		GFF3249	0.55	-0.4
3,304,105	-		GFF3249	0.55	+0.1
3,304,105	-		GFF3249	0.55	-0.1
3,304,109	-		GFF3249	0.56	-2.0
3,304,109	-		GFF3249	0.56	+0.2
3,304,109	-		GFF3249	0.56	-0.5
3,304,138	-		GFF3249	0.58	-0.1
3,304,139	-		GFF3249	0.58	+0.3
3,304,141	-		GFF3249	0.58	+0.1
3,304,148	+		GFF3249	0.59	-2.1
3,304,181	-		GFF3249	0.62	-0.7
3,304,181	-		GFF3249	0.62	-1.9
3,304,182	-		GFF3249	0.62	+0.6
3,304,183	+		GFF3249	0.62	+0.0
3,304,191	-		GFF3249	0.63	-0.1
3,304,219	+		GFF3249	0.65	+0.7