Strain Fitness in Sphingobium sp. HT1-2 around GFF3235

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,287,841	+				+0.6
3,287,849	-				-0.5
3,287,849	-				-1.1
3,287,857	+				+0.2
3,287,859	-				+0.0
3,287,876	+				-0.3
3,287,918	+				+0.3
3,287,926	-				+0.1
3,287,937	+				-0.7
3,287,945	+		GFF3234	0.11	+0.5
3,287,945	+		GFF3234	0.11	-1.5
3,287,945	+		GFF3234	0.11	-0.8
3,287,953	-		GFF3234	0.12	+0.2
3,287,953	-		GFF3234	0.12	-0.7
3,287,953	-		GFF3234	0.12	-1.2
3,287,953	-		GFF3234	0.12	-1.6
3,287,974	+		GFF3234	0.15	-1.3
3,287,982	-		GFF3234	0.16	-1.4
3,288,007	-		GFF3234	0.20	-1.0
3,288,014	+		GFF3234	0.21	+0.3
3,288,014	-		GFF3234	0.21	+0.8
3,288,017	+		GFF3234	0.22	+0.6
3,288,025	+		GFF3234	0.23	-0.8
3,288,025	-		GFF3234	0.23	+0.0
3,288,032	-		GFF3234	0.24	+1.7
3,288,032	-		GFF3234	0.24	+0.3
3,288,033	-		GFF3234	0.24	+0.8
3,288,058	-		GFF3234	0.28	+1.0
3,288,058	-		GFF3234	0.28	+0.1
3,288,059	+		GFF3234	0.28	-0.7
3,288,066	+		GFF3234	0.29	-0.8
3,288,081	+		GFF3234	0.31	-0.2
3,288,091	+		GFF3234	0.33	+0.3
3,288,093	+		GFF3234	0.33	+0.2
3,288,101	-		GFF3234	0.34	+0.3
3,288,111	-		GFF3234	0.36	+0.6
3,288,120	-		GFF3234	0.37	+0.7
3,288,122	+		GFF3234	0.37	+1.2
3,288,122	+		GFF3234	0.37	-0.0
3,288,122	+		GFF3234	0.37	+1.2
3,288,122	+		GFF3234	0.37	-0.8
3,288,130	-		GFF3234	0.38	-0.8
3,288,154	-		GFF3234	0.42	-1.8
3,288,164	-		GFF3234	0.43	+0.8
3,288,172	-		GFF3234	0.45	-0.3
3,288,174	+		GFF3234	0.45	-1.2
3,288,174	+		GFF3234	0.45	+0.5
3,288,174	+		GFF3234	0.45	+0.3
3,288,177	-		GFF3234	0.45	-0.3
3,288,179	+		GFF3234	0.46	-0.5
3,288,179	+		GFF3234	0.46	-0.8
3,288,179	+		GFF3234	0.46	-0.4
3,288,179	+		GFF3234	0.46	+1.2
3,288,179	+		GFF3234	0.46	-0.7
3,288,179	+		GFF3234	0.46	-0.6
3,288,179	+		GFF3234	0.46	-2.2
3,288,182	-		GFF3234	0.46	-1.4
3,288,182	-		GFF3234	0.46	+0.6
3,288,184	+		GFF3234	0.46	+0.5
3,288,184	+		GFF3234	0.46	+0.5
3,288,187	-		GFF3234	0.47	-0.2
3,288,187	-		GFF3234	0.47	-0.2
3,288,199	-		GFF3234	0.49	-0.3
3,288,201	+		GFF3234	0.49	+0.2
3,288,209	-		GFF3234	0.50	-0.3
3,288,209	-		GFF3234	0.50	-1.4
3,288,209	-		GFF3234	0.50	-0.8
3,288,218	+		GFF3234	0.51	-0.5
3,288,235	+		GFF3234	0.54	-0.4
3,288,235	+		GFF3234	0.54	-0.7
3,288,243	-		GFF3234	0.55	-0.8
3,288,250	-		GFF3234	0.56	-0.5
3,288,253	-		GFF3234	0.57	-0.3
3,288,289	+		GFF3234	0.62	+1.0
3,288,296	+		GFF3234	0.63	-2.0
3,288,303	+		GFF3234	0.64	-0.3
3,288,303	+		GFF3234	0.64	+0.9
3,288,303	+		GFF3234	0.64	-0.4
3,288,303	+		GFF3234	0.64	-1.4
3,288,303	+		GFF3234	0.64	-0.4
3,288,303	+		GFF3234	0.64	+1.1
3,288,304	-		GFF3234	0.64	-0.3
3,288,308	+		GFF3234	0.65	-0.0
3,288,308	+		GFF3234	0.65	+0.7
3,288,311	-		GFF3234	0.65	-0.1
3,288,311	-		GFF3234	0.65	-1.5
3,288,311	-		GFF3234	0.65	-0.5
3,288,311	-		GFF3234	0.65	+0.9
3,288,311	-		GFF3234	0.65	-0.1
3,288,311	-		GFF3234	0.65	+0.3
3,288,311	-		GFF3234	0.65	+1.1
3,288,311	-		GFF3234	0.65	+0.3
3,288,312	+		GFF3234	0.65	+0.3
3,288,313	+		GFF3234	0.65	-0.0
3,288,313	+		GFF3234	0.65	+1.6
3,288,313	+		GFF3234	0.65	-0.7
3,288,316	-		GFF3234	0.66	+0.0
3,288,316	-		GFF3234	0.66	-1.3
3,288,316	-		GFF3234	0.66	-0.6
3,288,321	-		GFF3234	0.67	-0.3
3,288,326	-		GFF3234	0.67	-0.6
3,288,360	+		GFF3234	0.72	-1.7
3,288,367	+		GFF3234	0.73	-0.3
3,288,367	+		GFF3234	0.73	+0.2
3,288,367	+		GFF3234	0.73	+1.2
3,288,367	+		GFF3234	0.73	-1.7
3,288,367	+		GFF3234	0.73	+0.4
3,288,367	+		GFF3234	0.73	-0.1
3,288,367	+		GFF3234	0.73	+0.5
3,288,371	+		GFF3234	0.74	-0.4
3,288,371	+		GFF3234	0.74	-1.8
3,288,372	+		GFF3234	0.74	-0.5
3,288,375	-		GFF3234	0.75	+0.0
3,288,375	-		GFF3234	0.75	+0.4
3,288,375	-		GFF3234	0.75	-0.9
3,288,375	-		GFF3234	0.75	+0.0
3,288,375	-		GFF3234	0.75	+0.1
3,288,375	-		GFF3234	0.75	-1.9
3,288,375	-		GFF3234	0.75	+0.0
3,288,379	-		GFF3234	0.75	-1.8
3,288,379	-		GFF3234	0.75	-0.2
3,288,379	-		GFF3234	0.75	-0.7
3,288,380	-		GFF3234	0.75	+0.6
3,288,380	-		GFF3234	0.75	+0.6
3,288,389	-		GFF3234	0.77	+0.5
3,288,406	+		GFF3234	0.79	+0.2
3,288,414	-		GFF3234	0.80	-0.6
3,288,426	+		GFF3234	0.82	-0.2
3,288,448	-		GFF3234	0.85	+0.2
3,288,462	+		GFF3234	0.88	+0.6
3,288,462	+		GFF3234	0.88	+0.7
3,288,462	+		GFF3234	0.88	-1.7
3,288,462	+		GFF3234	0.88	+0.8
3,288,463	+		GFF3234	0.88	+0.2
3,288,470	-		GFF3234	0.89	-0.1
3,288,471	-		GFF3234	0.89	-0.4
3,288,471	-		GFF3234	0.89	-0.5
3,288,471	-		GFF3234	0.89	-0.9
3,288,496	+				-0.3
3,288,496	+				-0.5
3,288,496	+				-0.3
3,288,504	-				-1.1
3,288,504	-				-0.6
3,288,504	-				-0.1
3,288,530	+				+0.7
3,288,552	+				+0.9
3,288,555	+				-0.3
3,288,555	-				+0.7
3,288,565	-				+0.9
3,288,573	-				+0.3
3,288,573	-				-0.7
3,288,578	+				-0.0
3,288,599	-				-0.3
3,288,645	-				+0.0
3,288,645	-				+2.0
3,288,660	+				+1.2
3,288,660	+				-2.0
3,288,668	-				+0.2
3,288,738	+				+0.5
3,288,753	+				+1.0
3,288,753	+				-0.2
3,288,753	+				-0.4
3,288,753	+				-0.8
3,288,753	+				+1.3
3,288,755	+				-0.5
3,288,755	+				+0.3
3,288,755	+				+0.7
3,288,760	+				+0.7
3,288,761	-				-0.3
3,288,761	-				+0.2
3,288,761	-				-1.3
3,288,761	-				-0.8
3,288,763	-				-0.1
3,288,765	+				-1.2
3,288,765	+				-0.4
3,288,768	-				-2.1
3,288,773	+				-0.7
3,288,773	-				-1.9
3,288,773	-				-0.5
3,288,817	+				-1.7
3,288,817	+				+0.9
3,288,817	+				+0.7
3,288,817	+				-1.3
3,288,825	-				+0.2
3,288,825	-				+1.2
3,288,825	-				-0.5
3,288,827	+				+0.3
3,288,829	-				-0.3
3,288,843	+				+0.0
3,288,850	+				+0.0
3,288,858	-				+0.6
3,288,861	-				-3.0
3,288,864	+				+0.3
3,288,866	+				+0.3
3,288,891	+				+1.2
3,288,891	+				+0.2
3,288,891	+				+0.6
3,288,920	+				-1.2
3,288,928	-				+1.2
3,288,935	+				-0.9
3,288,946	+				+0.9
3,288,954	-				+0.6
3,288,960	-				-1.5
3,289,004	+				+0.1
3,289,018	+				+0.3
3,289,018	+				+1.3
3,289,018	+				-2.3
3,289,018	+				+1.0
3,289,018	+				+1.5
3,289,023	+				-1.5
3,289,026	-				-0.8
3,289,031	-				+0.0
3,289,032	-		GFF3235	0.10	-0.1
3,289,036	+		GFF3235	0.10	+0.1
3,289,039	-		GFF3235	0.10	+0.0
3,289,041	+		GFF3235	0.10	-0.4
3,289,043	+		GFF3235	0.11	+0.7
3,289,067	+		GFF3235	0.12	-1.3
3,289,108	+		GFF3235	0.14	-1.0
3,289,125	-		GFF3235	0.14	+1.0
3,289,157	+		GFF3235	0.16	-0.5
3,289,165	-		GFF3235	0.16	+0.3
3,289,180	+		GFF3235	0.17	+0.9
3,289,180	+		GFF3235	0.17	+0.3
3,289,187	+		GFF3235	0.17	+1.1
3,289,188	-		GFF3235	0.17	+0.2
3,289,188	-		GFF3235	0.17	-0.3
3,289,188	-		GFF3235	0.17	+1.0
3,289,193	-		GFF3235	0.18	-0.2
3,289,206	+		GFF3235	0.18	+0.2
3,289,206	+		GFF3235	0.18	-1.4
3,289,206	+		GFF3235	0.18	-0.9
3,289,206	+		GFF3235	0.18	-0.7
3,289,214	-		GFF3235	0.19	-0.3
3,289,219	-		GFF3235	0.19	+1.1
3,289,219	-		GFF3235	0.19	+2.2
3,289,220	+		GFF3235	0.19	-2.0
3,289,228	+		GFF3235	0.19	-1.1
3,289,314	-		GFF3235	0.23	-2.5
3,289,316	-		GFF3235	0.23	+0.2
3,289,316	-		GFF3235	0.23	+0.6
3,289,316	-		GFF3235	0.23	-1.2
3,289,316	-		GFF3235	0.23	-1.0
3,289,327	-		GFF3235	0.24	-0.4
3,289,420	+		GFF3235	0.28	+0.7
3,289,442	+		GFF3235	0.29	-2.3
3,289,447	+		GFF3235	0.30	+0.3
3,289,447	+		GFF3235	0.30	+0.7
3,289,447	+		GFF3235	0.30	+0.2
3,289,447	+		GFF3235	0.30	+0.3
3,289,447	+		GFF3235	0.30	-0.8
3,289,447	+		GFF3235	0.30	+0.1
3,289,447	+		GFF3235	0.30	+0.4
3,289,455	-		GFF3235	0.30	-0.7
3,289,455	-		GFF3235	0.30	-0.5
3,289,455	-		GFF3235	0.30	-1.2
3,289,455	-		GFF3235	0.30	-0.2
3,289,455	-		GFF3235	0.30	-0.4
3,289,455	-		GFF3235	0.30	-0.8
3,289,466	+		GFF3235	0.31	+0.4
3,289,476	+		GFF3235	0.31	-0.2
3,289,489	+		GFF3235	0.32	-1.4
3,289,528	-		GFF3235	0.33	-0.4
3,289,541	+		GFF3235	0.34	+0.4
3,289,547	+		GFF3235	0.34	-0.7
3,289,549	-		GFF3235	0.34	-0.0
3,289,549	-		GFF3235	0.34	-2.1
3,289,552	+		GFF3235	0.35	-0.0
3,289,560	-		GFF3235	0.35	+0.2
3,289,596	+		GFF3235	0.37	-0.0
3,289,598	+		GFF3235	0.37	-0.3
3,289,619	+		GFF3235	0.38	-1.8
3,289,645	+		GFF3235	0.39	-0.0
3,289,646	+		GFF3235	0.39	-0.1
3,289,646	+		GFF3235	0.39	+0.4
3,289,646	+		GFF3235	0.39	-0.9
3,289,654	-		GFF3235	0.39	-0.4
3,289,664	-		GFF3235	0.40	+0.1
3,289,667	-		GFF3235	0.40	-0.5
3,289,672	-		GFF3235	0.40	-0.3
3,289,686	-		GFF3235	0.41	-0.4
3,289,688	-		GFF3235	0.41	-0.3
3,289,702	-		GFF3235	0.42	-0.8
3,289,734	+		GFF3235	0.43	-0.3
3,289,734	+		GFF3235	0.43	+0.1
3,289,742	-		GFF3235	0.44	+0.3
3,289,757	+		GFF3235	0.44	-1.0
3,289,757	+		GFF3235	0.44	-1.4
3,289,757	+		GFF3235	0.44	-2.2
3,289,757	+		GFF3235	0.44	-1.9
3,289,757	+		GFF3235	0.44	+0.7
3,289,757	+		GFF3235	0.44	+0.2
3,289,760	-		GFF3235	0.44	-1.3
3,289,765	-		GFF3235	0.45	+0.2
3,289,765	-		GFF3235	0.45	+0.3
3,289,765	-		GFF3235	0.45	-0.3
3,289,765	-		GFF3235	0.45	+1.0
3,289,765	-		GFF3235	0.45	-1.3
3,289,765	-		GFF3235	0.45	+0.1
3,289,765	-		GFF3235	0.45	-0.3
3,289,765	-		GFF3235	0.45	+1.4
3,289,765	-		GFF3235	0.45	+1.5
3,289,765	-		GFF3235	0.45	+0.9
3,289,773	-		GFF3235	0.45	-2.2
3,289,776	+		GFF3235	0.45	+0.6
3,289,776	+		GFF3235	0.45	-0.4
3,289,796	-		GFF3235	0.46	-0.5
3,289,801	+		GFF3235	0.46	+0.5
3,289,805	+		GFF3235	0.47	-0.2
3,289,805	+		GFF3235	0.47	+0.8
3,289,805	+		GFF3235	0.47	-0.8
3,289,808	-		GFF3235	0.47	+0.0
3,289,809	-		GFF3235	0.47	-2.5
3,289,812	+		GFF3235	0.47	+0.3
3,289,813	-		GFF3235	0.47	-0.5
3,289,813	-		GFF3235	0.47	-0.4
3,289,813	-		GFF3235	0.47	-0.7
3,289,813	-		GFF3235	0.47	-0.1
3,289,813	-		GFF3235	0.47	+0.8
3,289,813	-		GFF3235	0.47	+0.2
3,289,881	+		GFF3235	0.50	-0.0
3,289,889	-		GFF3235	0.51	-0.2
3,289,895	+		GFF3235	0.51	-1.8
3,289,914	+		GFF3235	0.52	+0.3
3,289,919	+		GFF3235	0.52	+0.9
3,289,924	+		GFF3235	0.52	-1.0
3,289,962	+		GFF3235	0.54	+0.2
3,289,962	+		GFF3235	0.54	-1.6
3,289,970	-		GFF3235	0.54	-0.2
3,289,972	+		GFF3235	0.54	+0.4
3,289,981	-		GFF3235	0.55	+0.7
3,289,989	+		GFF3235	0.55	+0.5
3,289,997	-		GFF3235	0.56	+1.2
3,289,997	-		GFF3235	0.56	-0.8
3,290,002	-		GFF3235	0.56	-0.5
3,290,005	+		GFF3235	0.56	-0.4
3,290,005	+		GFF3235	0.56	-0.5
3,290,005	+		GFF3235	0.56	-2.0
3,290,005	+		GFF3235	0.56	+0.2
3,290,006	-		GFF3235	0.56	-0.2
3,290,007	-		GFF3235	0.56	-0.3
3,290,024	+		GFF3235	0.57	+0.1
3,290,024	+		GFF3235	0.57	+1.7
3,290,029	+		GFF3235	0.57	+0.1
3,290,029	+		GFF3235	0.57	+0.7
3,290,032	-		GFF3235	0.57	+0.3
3,290,032	-		GFF3235	0.57	-1.4
3,290,043	+		GFF3235	0.58	-1.4
3,290,045	+		GFF3235	0.58	-2.2
3,290,045	+		GFF3235	0.58	+0.2
3,290,069	+		GFF3235	0.59	-0.0
3,290,073	+		GFF3235	0.59	-3.4
3,290,094	+		GFF3235	0.60	-0.3
3,290,113	-		GFF3235	0.61	+1.7
3,290,125	-		GFF3235	0.62	+0.5
3,290,125	-		GFF3235	0.62	+0.8
3,290,125	-		GFF3235	0.62	-0.7
3,290,125	-		GFF3235	0.62	+0.6
3,290,127	+		GFF3235	0.62	-1.2
3,290,135	+		GFF3235	0.62	-0.1
3,290,135	-		GFF3235	0.62	+1.2
3,290,171	-		GFF3235	0.64	-1.3
3,290,172	-		GFF3235	0.64	-0.9
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3,290,223	+		GFF3235	0.66	-1.3
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3,290,231	-		GFF3235	0.67	-0.4
3,290,231	-		GFF3235	0.67	-2.0
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3,290,258	+		GFF3235	0.68	+0.8
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3,290,271	-		GFF3235	0.69	-0.2
3,290,271	-		GFF3235	0.69	-1.1
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3,290,343	+		GFF3235	0.72	+0.9
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3,290,403	+		GFF3235	0.75	-0.9
3,290,403	+		GFF3235	0.75	-0.4
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3,290,403	+		GFF3235	0.75	-0.7
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3,290,405	+		GFF3235	0.75	-1.0
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3,290,405	+		GFF3235	0.75	+0.8
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3,290,413	-		GFF3235	0.75	-1.3
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3,290,433	+		GFF3235	0.76	-0.9
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3,290,446	-		GFF3235	0.77	+0.8
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3,290,462	+		GFF3235	0.78	+0.8
3,290,462	+		GFF3235	0.78	-2.8
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3,290,469	-		GFF3235	0.78	-2.3
3,290,470	-		GFF3235	0.78	-1.3
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3,290,472	+		GFF3235	0.78	-0.8
3,290,472	+		GFF3235	0.78	+1.1
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3,290,613	-		GFF3235	0.85	-0.3
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3,290,629	+		GFF3235	0.86	+0.9
3,290,649	+		GFF3235	0.86	-1.0
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3,290,660	+		GFF3235	0.87	+0.1
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3,290,686	+		GFF3235	0.88	-0.4
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3,290,714	+		GFF3235	0.90	+1.2
3,290,714	+		GFF3235	0.90	+0.0
3,290,723	+				-2.2
3,290,733	+				-0.5
3,290,757	-				+0.0
3,290,757	-				-0.8
3,290,762	+				-0.2
3,290,762	+				-0.2
3,290,770	-				-0.4
3,290,783	+				+1.2
3,290,783	+				-0.0
3,290,789	+				-0.3
3,290,791	-				-1.0
3,290,793	+				-0.5
3,290,802	-				+0.8
3,290,841	-				-0.8
3,290,844	+				-0.3
3,290,854	-				-0.5
3,290,869	-				+0.0
3,290,869	-				+1.4
3,290,882	+				-0.9
3,290,960	+				-1.0
3,290,969	-				-0.3
3,290,969	-				-1.1
3,290,969	-				+1.2
3,290,969	-				-1.8
3,290,969	-				-1.6
3,290,971	-				-0.3
3,290,971	-				+1.9
3,290,981	+				+0.1
3,290,981	+				-0.5
3,291,010	+				-0.0
3,291,059	+				+0.6
3,291,079	-				-1.2
3,291,079	-				-2.1
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3,291,124	-				-1.5
3,291,129	-				+0.2
3,291,130	+				-1.4
3,291,138	-				-0.3
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3,291,367	-		GFF3236	0.21	+0.8
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3,291,393	+		GFF3236	0.22	-1.8
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